Wall clock time and date at job start Mon Mar 8 2021 12:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35993 * 117.00125 * 2 1 4 4 C 1.39104 * 120.06311 * 179.97438 * 3 2 1 5 5 O 1.36019 * 120.08035 * 359.97438 * 4 3 2 6 6 S 1.52204 * 113.99759 * 270.02153 * 5 4 3 7 7 O 1.42111 * 104.27517 * 191.07007 * 6 5 4 8 8 O 1.42103 * 104.27860 * 318.92473 * 6 5 4 9 9 C 1.81400 * 104.45020 * 74.99894 * 6 5 4 10 10 C 1.52999 * 109.47058 * 179.97438 * 9 6 5 11 11 H 1.08996 * 112.85490 * 314.67006 * 10 9 6 12 12 C 1.53779 * 113.61115 * 85.86451 * 10 9 6 13 13 C 1.54045 * 86.98861 * 89.16199 * 12 10 9 14 14 O 1.42910 * 113.68833 * 270.87397 * 13 12 10 15 15 C 1.42901 * 113.99640 * 162.73251 * 14 13 12 16 16 C 1.53001 * 113.62516 * 139.97772 * 13 12 10 17 17 F 1.39900 * 109.46782 * 323.60061 * 16 13 12 18 18 F 1.39906 * 109.46980 * 83.59721 * 16 13 12 19 19 F 1.39893 * 109.47482 * 203.60000 * 16 13 12 20 20 C 1.53779 * 87.07692 * 25.43012 * 13 12 10 21 21 C 1.38669 * 119.84444 * 180.02562 * 4 3 2 22 22 Cl 1.73603 * 120.00903 * 179.97438 * 21 4 3 23 23 C 1.38329 * 119.98063 * 0.02562 * 21 4 3 24 24 C 1.38256 * 120.13193 * 359.97438 * 23 21 4 25 25 C 1.50698 * 119.92529 * 180.02562 * 24 23 21 26 26 O 1.42907 * 109.47059 * 119.99603 * 25 24 23 27 27 Si 1.86302 * 109.46863 * 0.02562 * 25 24 23 28 28 C 1.38238 * 120.15321 * 0.27413 * 24 23 21 29 29 H 1.09001 * 109.47262 * 59.99476 * 1 2 3 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46925 * 299.99465 * 1 2 3 32 32 H 1.08994 * 109.47033 * 299.99928 * 9 6 5 33 33 H 1.08994 * 109.47007 * 59.99954 * 9 6 5 34 34 H 1.09009 * 113.61525 * 203.66537 * 12 10 9 35 35 H 1.09000 * 113.61496 * 334.56499 * 12 10 9 36 36 H 1.08994 * 109.47580 * 66.86856 * 15 14 13 37 37 H 1.09008 * 109.46614 * 186.86642 * 15 14 13 38 38 H 1.09002 * 109.47442 * 306.86394 * 15 14 13 39 39 H 1.09000 * 113.61551 * 220.02618 * 20 13 12 40 40 H 1.09002 * 113.69148 * 89.13571 * 20 13 12 41 41 H 1.07999 * 119.93333 * 180.02562 * 23 21 4 42 42 H 1.08991 * 109.47178 * 240.00243 * 25 24 23 43 43 H 0.96703 * 113.99535 * 179.97438 * 26 25 24 44 44 H 1.48504 * 110.00026 * 59.99936 * 27 25 24 45 45 H 1.48501 * 109.99746 * 181.31760 * 27 25 24 46 46 H 1.07997 * 119.98631 * 179.70575 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4355 1.2860 0.0005 5 8 4.1791 0.1471 0.0016 6 16 4.5165 -0.3706 1.3925 7 8 5.4911 -1.3794 1.1641 8 8 4.8330 0.7992 2.1347 9 6 2.9689 -1.1043 1.9902 10 6 3.1813 -1.6675 3.3968 11 1 4.1036 -2.2412 3.4883 12 6 2.9902 -0.6265 4.5124 13 6 1.5026 -1.0264 4.5192 14 8 0.7009 -0.2715 3.6084 15 6 -0.5639 -0.8684 3.3151 16 6 0.8951 -1.1045 5.9213 17 9 1.8477 -1.6056 6.8150 18 9 0.4994 0.1737 6.3299 19 9 -0.2171 -1.9528 5.9012 20 6 1.9478 -2.3896 3.9640 21 6 4.0603 2.5239 0.0011 22 17 5.7936 2.6216 0.0024 23 6 3.3021 3.6809 0.0016 24 6 1.9216 3.6060 0.0011 25 6 1.1002 4.8695 0.0011 26 8 0.2762 4.9019 -1.1661 27 14 2.2343 6.3475 0.0011 28 6 1.2930 2.3749 0.0057 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.1917 -0.3407 2.0177 33 1 2.6651 -1.9080 1.3195 34 1 3.5134 -0.8750 5.4359 35 1 3.1667 0.3990 4.1876 36 1 -1.1842 -0.8642 4.2113 37 1 -1.0596 -0.3008 2.5275 38 1 -0.4127 -1.8954 2.9827 39 1 1.2832 -2.7867 3.1968 40 1 2.1865 -3.1204 4.7367 41 1 3.7896 4.6446 0.0016 42 1 0.4711 4.8938 0.8908 43 1 -0.2815 5.6892 -1.2320 44 1 3.0971 6.3256 -1.2074 45 1 1.4367 7.5997 0.0332 46 1 0.2144 2.3195 0.0101 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80432_17541816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:51:05 Heat of formation + Delta-G solvation = -289.511713 kcal Electronic energy + Delta-G solvation = -44641.329247 eV Core-core repulsion = 38432.732697 eV Total energy + Delta-G solvation = -6208.596550 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 447.059 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -51.21937 -48.75961 -48.68459 -42.67869 -41.43419 -40.41875 -39.33080 -38.41648 -38.02658 -37.35941 -37.24364 -37.16751 -32.46037 -31.76991 -31.56649 -28.87321 -28.17173 -27.80229 -27.06402 -26.74243 -24.05404 -23.80807 -23.32601 -21.93935 -20.72303 -19.98152 -19.76241 -19.51348 -19.33891 -19.05341 -18.85338 -18.60173 -18.39276 -17.64490 -17.17728 -16.99946 -16.87774 -16.54224 -16.38989 -16.02813 -15.95307 -15.80466 -15.62085 -15.56833 -15.40197 -15.23879 -15.09611 -14.88470 -14.85489 -14.75180 -14.59844 -14.42105 -14.31760 -14.19183 -13.96227 -13.78947 -13.44052 -13.28613 -13.23935 -13.17587 -13.16329 -12.98734 -12.88846 -12.69567 -12.52283 -12.32686 -12.26848 -12.18036 -12.06014 -11.95800 -11.80304 -11.39271 -10.77760 -10.61903 -10.07570 -9.67682 -4.92331 -1.19010 -0.37030 -0.21352 0.59448 0.92729 1.21480 1.55199 1.57657 1.89366 1.92885 2.00694 2.10124 2.44539 2.57276 2.63932 2.81158 2.86903 3.07606 3.16721 3.26548 3.34139 3.40895 3.48774 3.52004 3.54075 3.79286 3.89529 3.96363 4.18145 4.25313 4.27486 4.35601 4.39090 4.40655 4.42867 4.48203 4.52623 4.57889 4.58488 4.66991 4.70360 4.73990 4.81323 4.89663 4.93095 4.96934 5.06839 5.73857 5.91610 6.56735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.310 6.310 3 C 0.146 3.854 4 C 0.015 3.985 5 O -0.656 6.656 6 S 2.571 3.429 7 O -0.967 6.967 8 O -0.956 6.956 9 C -0.609 4.609 10 C -0.100 4.100 11 H 0.116 0.884 12 C -0.135 4.135 13 C 0.044 3.956 14 O -0.339 6.339 15 C -0.005 4.005 16 C 0.434 3.566 17 F -0.178 7.178 18 F -0.186 7.186 19 F -0.183 7.183 20 C -0.128 4.128 21 C 0.012 3.988 22 Cl -0.039 7.039 23 C -0.137 4.137 24 C -0.002 4.002 25 C -0.074 4.074 26 O -0.550 6.550 27 Si 0.732 3.268 28 C -0.154 4.154 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.045 0.955 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.163 0.837 42 H 0.124 0.876 43 H 0.402 0.598 44 H -0.296 1.296 45 H -0.273 1.273 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 0.972 0.914 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.223 6.223 3 C 0.097 3.903 4 C -0.028 4.028 5 O -0.615 6.615 6 S 2.671 3.329 7 O -0.966 6.966 8 O -0.955 6.955 9 C -0.739 4.739 10 C -0.120 4.120 11 H 0.134 0.866 12 C -0.172 4.172 13 C 0.001 3.999 14 O -0.257 6.257 15 C -0.100 4.100 16 C 0.379 3.621 17 F -0.159 7.159 18 F -0.167 7.167 19 F -0.165 7.165 20 C -0.166 4.166 21 C -0.017 4.017 22 Cl -0.010 7.010 23 C -0.155 4.155 24 C -0.003 4.003 25 C -0.184 4.184 26 O -0.361 6.361 27 Si 0.637 3.363 28 C -0.173 4.173 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.102 0.898 32 H 0.182 0.818 33 H 0.188 0.812 34 H 0.150 0.850 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.142 0.858 41 H 0.180 0.820 42 H 0.142 0.858 43 H 0.254 0.746 44 H -0.223 1.223 45 H -0.199 1.199 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.296 1.216 0.120 8.386 hybrid contribution -1.372 -0.205 -0.255 1.410 sum -9.668 1.011 -0.135 9.722 Atomic orbital electron populations 1.23814 0.74730 1.07092 1.03660 1.86180 1.24843 1.24017 1.87229 1.18805 0.88628 0.87489 0.95354 1.17109 0.86869 0.81520 1.17320 1.85721 1.72778 1.45371 1.57587 1.06155 0.78209 0.75130 0.73379 1.93597 1.58301 1.61449 1.83205 1.93636 1.83722 1.46200 1.71927 1.30634 1.21176 1.15690 1.06428 1.21843 1.01955 0.98294 0.89913 0.86579 1.23641 0.89684 1.02285 1.01578 1.24011 0.93104 0.98487 0.84257 1.88034 1.30154 1.46954 1.60545 1.23472 0.83431 1.00781 1.02357 1.21479 0.76574 0.73502 0.90539 1.93177 1.64131 1.87549 1.71088 1.93195 1.91271 1.40066 1.92180 1.93180 1.54750 1.71583 1.96938 1.23634 0.96464 0.93974 1.02515 1.20803 0.86558 0.93060 1.01291 1.98425 1.07969 1.98405 1.96216 1.20927 0.93337 0.97172 1.04078 1.19403 0.91790 0.95275 0.93877 1.24772 0.99860 1.01487 0.92296 1.86516 1.58202 1.48398 1.42939 0.94219 0.80276 0.74536 0.87301 1.21392 1.02478 0.89127 1.04300 0.90834 0.84982 0.89803 0.81767 0.81248 0.85002 0.87967 0.93658 0.86017 0.90883 0.86547 0.85802 0.81993 0.85848 0.74581 1.22334 1.19936 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.74 113.37 1.10 1.10 16 2 O -0.31 1.41 7.49 -79.58 -0.60 0.81 16 3 C 0.15 -0.04 5.83 22.56 0.13 0.10 16 4 C 0.02 0.09 4.80 22.58 0.11 0.20 16 5 O -0.66 -5.79 9.30 -60.78 -0.57 -6.36 16 6 S 2.57 19.38 5.14 -56.49 -0.29 19.09 16 7 O -0.97 -14.23 18.09 -118.57 -2.15 -16.37 16 8 O -0.96 -9.55 14.98 -118.57 -1.78 -11.32 16 9 C -0.61 1.46 4.11 71.98 0.30 1.76 16 10 C -0.10 0.40 3.83 -10.27 -0.04 0.36 16 11 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 12 C -0.13 0.36 6.93 31.21 0.22 0.57 16 13 C 0.04 -0.15 0.82 -10.18 -0.01 -0.16 16 14 O -0.34 1.60 8.41 -148.98 -1.25 0.35 16 15 C -0.01 0.05 10.23 113.37 1.16 1.21 16 16 C 0.43 0.02 2.56 71.98 0.18 0.20 16 17 F -0.18 -0.17 15.77 44.97 0.71 0.54 16 18 F -0.19 -0.67 17.16 44.97 0.77 0.10 16 19 F -0.18 0.00 15.25 44.97 0.69 0.68 16 20 C -0.13 0.92 6.54 31.12 0.20 1.13 16 21 C 0.01 0.08 5.66 22.39 0.13 0.21 16 22 Cl -0.04 -0.38 27.25 -2.72 -0.07 -0.45 16 23 C -0.14 -0.20 8.45 22.30 0.19 -0.01 16 24 C 0.00 0.00 5.42 -19.86 -0.11 -0.10 16 25 C -0.07 0.50 2.81 71.24 0.20 0.70 16 26 O -0.55 2.93 12.74 -148.98 -1.90 1.03 16 27 Si 0.73 -3.46 29.78 68.60 2.04 -1.42 16 28 C -0.15 0.60 8.60 22.35 0.19 0.79 16 29 H 0.07 -0.97 7.67 -2.39 -0.02 -0.99 16 30 H 0.13 -2.23 8.14 -2.39 -0.02 -2.25 16 31 H 0.08 -1.33 6.02 -2.39 -0.01 -1.34 16 32 H 0.16 -0.69 3.95 -2.39 -0.01 -0.70 16 33 H 0.17 -1.20 8.10 -2.39 -0.02 -1.22 16 34 H 0.13 -0.62 7.11 -2.38 -0.02 -0.64 16 35 H 0.10 -0.10 7.91 -2.39 -0.02 -0.11 16 36 H 0.04 -0.31 6.65 -2.39 -0.02 -0.32 16 37 H 0.12 -1.80 6.42 -2.38 -0.02 -1.81 16 38 H 0.07 -0.91 6.50 -2.39 -0.02 -0.92 16 39 H 0.12 -1.27 6.62 -2.39 -0.02 -1.28 16 40 H 0.12 -1.12 7.93 -2.39 -0.02 -1.14 16 41 H 0.16 -0.29 4.87 -2.91 -0.01 -0.30 16 42 H 0.12 -1.58 7.96 -2.39 -0.02 -1.60 16 43 H 0.40 -5.21 8.74 -74.06 -0.65 -5.86 16 44 H -0.30 -1.00 7.11 99.48 0.71 -0.30 16 45 H -0.27 0.37 7.11 99.48 0.71 1.08 16 46 H 0.18 -1.85 6.30 -2.91 -0.02 -1.87 16 Total: 0.00 -27.54 400.96 0.06 -27.48 By element: Atomic # 1 Polarization: -22.70 SS G_CDS: 0.50 Total: -22.20 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 3.96 Total: 8.05 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -8.23 Total: -31.86 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 2.17 Total: 1.32 kcal Atomic # 14 Polarization: -3.46 SS G_CDS: 2.04 Total: -1.42 kcal Atomic # 16 Polarization: 19.38 SS G_CDS: -0.29 Total: 19.09 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.07 Total: -0.45 kcal Total: -27.54 0.06 -27.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80432_17541816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -262.032 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -289.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds