Wall clock time and date at job start Mon Mar 8 2021 12:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00145 * 2 1 4 4 O 1.20828 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00378 * 179.97438 * 3 2 1 6 6 H 1.09003 * 112.84156 * 48.80740 * 5 3 2 7 7 C 1.53783 * 113.61332 * 179.97438 * 5 3 2 8 8 C 1.53782 * 87.07791 * 140.06886 * 7 5 3 9 9 H 1.09003 * 113.61413 * 89.11584 * 8 7 5 10 10 S 1.81397 * 113.61482 * 220.01699 * 8 7 5 11 11 O 1.42096 * 110.54553 * 294.99271 * 10 8 7 12 12 O 1.42106 * 110.54242 * 71.73995 * 10 8 7 13 13 O 1.52198 * 104.45106 * 183.36076 * 10 8 7 14 14 C 1.35911 * 114.00638 * 284.12454 * 13 10 8 15 15 C 1.38794 * 120.06065 * 269.81314 * 14 13 10 16 16 Br 1.89098 * 120.03447 * 0.02562 * 15 14 13 17 17 C 1.38239 * 119.92472 * 179.72350 * 15 14 13 18 18 C 1.38238 * 120.05027 * 0.57032 * 17 15 14 19 19 C 1.50701 * 119.94221 * 179.72712 * 18 17 15 20 20 O 1.42910 * 109.46857 * 244.97474 * 19 18 17 21 21 Si 1.86294 * 109.47286 * 4.97647 * 19 18 17 22 22 C 1.38286 * 120.11625 * 359.70209 * 18 17 15 23 23 C 1.38144 * 120.07302 * 359.97438 * 22 18 17 24 24 C 1.53774 * 113.69457 * 277.53882 * 5 3 2 25 25 H 1.08993 * 109.47371 * 59.99698 * 1 2 3 26 26 H 1.09001 * 109.46973 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47059 * 299.99843 * 1 2 3 28 28 H 1.08999 * 113.61363 * 25.52170 * 7 5 3 29 29 H 1.08997 * 113.68828 * 254.62249 * 7 5 3 30 30 H 1.07999 * 119.97124 * 180.27468 * 17 15 14 31 31 H 1.09001 * 109.47273 * 124.97828 * 19 18 17 32 32 H 0.96706 * 113.99285 * 60.00132 * 20 19 18 33 33 H 1.48493 * 110.00123 * 180.02562 * 21 19 18 34 34 H 1.48505 * 109.99828 * 301.32033 * 21 19 18 35 35 H 1.08001 * 119.96559 * 180.02562 * 22 18 17 36 36 H 1.07995 * 120.02701 * 180.02562 * 23 22 18 37 37 H 1.08999 * 113.61832 * 105.45124 * 24 5 3 38 38 H 1.09009 * 113.61250 * 334.55376 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6362 -0.7550 7 6 4.1077 2.7143 -0.0001 8 6 5.1820 2.2270 0.9864 9 1 6.0813 1.8483 0.5007 10 16 5.5413 3.4111 2.3128 11 8 6.1163 4.5966 1.7807 12 8 4.4611 3.4706 3.2343 13 8 6.6722 2.7665 3.1014 14 6 6.2735 1.7471 3.9070 15 6 5.8923 2.0041 5.2166 16 35 5.9263 3.7737 5.8822 17 6 5.4818 0.9659 6.0318 18 6 5.4622 -0.3286 5.5471 19 6 5.0201 -1.4594 6.4398 20 8 6.1196 -2.3432 6.6688 21 14 4.4272 -0.7713 8.0663 22 6 5.8470 -0.5877 4.2443 23 6 6.2517 0.4470 3.4233 24 6 4.1926 1.1231 1.3968 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.4176 3.4405 0.4294 29 1 4.5100 3.0304 -0.9626 30 1 5.1808 1.1656 7.0495 31 1 4.2087 -2.0060 5.9591 32 1 6.8794 -1.9234 7.0951 33 1 3.9890 -1.8765 8.9559 34 1 5.5147 0.0030 8.7168 35 1 5.8303 -1.5999 3.8681 36 1 6.5516 0.2439 2.4060 37 1 4.6631 0.1537 1.5613 38 1 3.5257 1.4141 2.2085 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80522_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:07:49 Heat of formation + Delta-G solvation = -140.206716 kcal Electronic energy + Delta-G solvation = -29330.551718 eV Core-core repulsion = 24895.159952 eV Total energy + Delta-G solvation = -4435.391766 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.990 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.42957 -41.89209 -40.00992 -39.55730 -38.45926 -37.56294 -37.41940 -37.34630 -33.70017 -32.51087 -30.53742 -29.86226 -27.72301 -27.14507 -27.04870 -24.29895 -23.70834 -23.20042 -21.65264 -20.72821 -19.94222 -19.29734 -18.87457 -18.56493 -18.25922 -17.71172 -17.46631 -17.10644 -16.71693 -16.45148 -16.32700 -16.13049 -15.55395 -14.98060 -14.77708 -14.71921 -14.50203 -14.44712 -14.35777 -13.90789 -13.78777 -13.73719 -13.57989 -13.54723 -13.30958 -13.25446 -12.99056 -12.72898 -12.57994 -12.42619 -12.05397 -11.85872 -11.82668 -11.78667 -11.59844 -11.52105 -11.30592 -10.70332 -10.25545 -9.93750 -4.94882 -1.26211 -0.30310 -0.17760 0.30810 0.88191 1.06204 1.24390 1.54489 1.71090 1.92134 2.09486 2.32353 2.57761 2.92194 3.09156 3.21979 3.27016 3.33651 3.47033 3.63894 3.65468 3.92302 3.93114 3.98534 4.21682 4.30747 4.32360 4.33272 4.38379 4.44466 4.50199 4.60208 4.65211 4.71101 4.72533 4.74789 4.90360 4.99515 5.10735 5.34978 5.44577 6.46202 6.64756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.463 3.537 4 O -0.541 6.541 5 C -0.086 4.086 6 H 0.178 0.822 7 C -0.106 4.106 8 C -0.620 4.620 9 H 0.212 0.788 10 S 2.574 3.426 11 O -0.968 6.968 12 O -0.957 6.957 13 O -0.663 6.663 14 C 0.075 3.925 15 C -0.089 4.089 16 Br -0.045 7.045 17 C -0.084 4.084 18 C -0.089 4.089 19 C -0.061 4.061 20 O -0.536 6.536 21 Si 0.722 3.278 22 C -0.047 4.047 23 C -0.108 4.108 24 C -0.099 4.099 25 H 0.059 0.941 26 H 0.132 0.868 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.389 0.611 33 H -0.294 1.294 34 H -0.286 1.286 35 H 0.187 0.813 36 H 0.195 0.805 37 H 0.150 0.850 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 -10.459 -3.175 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.307 3.693 4 O -0.431 6.431 5 C -0.105 4.105 6 H 0.195 0.805 7 C -0.144 4.144 8 C -0.730 4.730 9 H 0.229 0.771 10 S 2.675 3.325 11 O -0.966 6.966 12 O -0.956 6.956 13 O -0.622 6.622 14 C 0.032 3.968 15 C -0.171 4.171 16 Br 0.042 6.958 17 C -0.104 4.104 18 C -0.091 4.091 19 C -0.172 4.172 20 O -0.344 6.344 21 Si 0.629 3.371 22 C -0.065 4.065 23 C -0.128 4.128 24 C -0.137 4.137 25 H 0.077 0.923 26 H 0.150 0.850 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.238 0.762 33 H -0.221 1.221 34 H -0.213 1.213 35 H 0.204 0.796 36 H 0.212 0.788 37 H 0.168 0.832 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.806 -9.170 -1.918 9.403 hybrid contribution 0.848 0.181 -0.220 0.895 sum 0.042 -8.988 -2.138 9.239 Atomic orbital electron populations 1.23544 0.75130 1.05729 1.02353 1.86500 1.24582 1.32583 1.83363 1.24167 0.92810 0.81191 0.71126 1.90709 1.68034 1.37767 1.46600 1.22610 0.85662 0.99725 1.02543 0.80510 1.22776 0.94106 0.96543 1.01002 1.32154 1.09944 1.14559 1.16372 0.77124 1.06074 0.73098 0.76445 0.76877 1.93597 1.76634 1.45349 1.81028 1.93676 1.56787 1.86473 1.58615 1.85742 1.59810 1.54322 1.62294 1.18125 1.03845 0.86333 0.88525 1.22162 1.06345 0.92940 0.95642 1.96842 1.97413 1.15213 1.86382 1.21130 0.97877 0.91303 1.00040 1.20603 0.98623 0.93292 0.96559 1.24916 0.93310 0.92919 1.06025 1.86625 1.27443 1.38271 1.82036 0.94336 0.86506 0.80449 0.75812 1.21481 0.93064 1.00832 0.91123 1.21913 0.98822 0.87999 1.04110 1.23070 0.95119 0.99808 0.95742 0.92263 0.85027 0.92181 0.89809 0.85710 0.83178 0.82908 0.76181 1.22110 1.21271 0.79598 0.78768 0.83184 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.10 10.56 113.37 1.20 1.10 16 2 O -0.35 0.58 10.57 -51.39 -0.54 0.04 16 3 C 0.46 0.19 7.49 71.24 0.53 0.72 16 4 O -0.54 -4.75 15.65 21.96 0.34 -4.41 16 5 C -0.09 0.69 4.25 -11.01 -0.05 0.64 16 6 H 0.18 -2.76 8.14 -2.39 -0.02 -2.78 16 7 C -0.11 0.47 6.99 31.12 0.22 0.69 16 8 C -0.62 4.76 3.72 31.13 0.12 4.88 16 9 H 0.21 -3.53 8.14 -2.39 -0.02 -3.55 16 10 S 2.57 11.86 5.10 -56.49 -0.29 11.57 16 11 O -0.97 -13.16 18.09 -118.57 -2.15 -15.30 16 12 O -0.96 -8.41 14.08 -118.57 -1.67 -10.08 16 13 O -0.66 -2.17 9.40 -61.65 -0.58 -2.75 16 14 C 0.08 -0.02 4.68 22.52 0.11 0.08 16 15 C -0.09 -0.26 5.58 22.40 0.12 -0.13 16 16 Br -0.04 -0.38 31.70 -20.37 -0.65 -1.02 16 17 C -0.08 0.20 8.40 22.27 0.19 0.39 16 18 C -0.09 0.68 5.35 -19.85 -0.11 0.57 16 19 C -0.06 0.52 2.80 71.24 0.20 0.71 16 20 O -0.54 3.18 12.83 -148.98 -1.91 1.27 16 21 Si 0.72 -3.41 29.88 68.60 2.05 -1.36 16 22 C -0.05 0.55 9.68 22.26 0.22 0.76 16 23 C -0.11 1.07 7.09 22.36 0.16 1.23 16 24 C -0.10 1.01 5.57 31.13 0.17 1.18 16 25 H 0.06 -0.15 8.13 -2.39 -0.02 -0.17 16 26 H 0.13 -1.28 8.14 -2.39 -0.02 -1.30 16 27 H 0.06 -0.15 8.13 -2.38 -0.02 -0.17 16 28 H 0.08 0.09 7.39 -2.39 -0.02 0.08 16 29 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 30 H 0.15 -0.53 4.83 -2.91 -0.01 -0.54 16 31 H 0.15 -1.94 7.96 -2.39 -0.02 -1.96 16 32 H 0.39 -3.99 8.70 -74.05 -0.64 -4.64 16 33 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 34 H -0.29 -0.12 7.01 99.48 0.70 0.58 16 35 H 0.19 -3.32 8.06 -2.91 -0.02 -3.34 16 36 H 0.20 -3.63 7.04 -2.91 -0.02 -3.65 16 37 H 0.15 -2.84 6.48 -2.39 -0.02 -2.86 16 38 H 0.10 -0.62 7.33 -2.38 -0.02 -0.64 16 Total: 0.00 -33.54 350.23 -1.80 -35.34 By element: Atomic # 1 Polarization: -26.64 SS G_CDS: 0.52 Total: -26.13 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 3.07 Total: 12.83 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -6.51 Total: -31.24 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.05 Total: -1.36 kcal Atomic # 16 Polarization: 11.86 SS G_CDS: -0.29 Total: 11.57 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -0.65 Total: -1.02 kcal Total: -33.54 -1.80 -35.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80522_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.869 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds