Wall clock time and date at job start Mon Mar 8 2021 11:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42891 * 109.47049 * 2 1 4 4 C 1.35988 * 116.99945 * 179.97438 * 3 2 1 5 5 C 1.38673 * 119.99927 * 179.97438 * 4 3 2 6 6 C 1.38160 * 119.99794 * 180.02562 * 5 4 3 7 7 C 1.50703 * 120.00004 * 180.02562 * 6 5 4 8 8 O 1.42896 * 109.46921 * 106.03817 * 7 6 5 9 9 Si 1.86307 * 109.46907 * 346.04206 * 7 6 5 10 10 C 1.38670 * 119.99980 * 0.02562 * 6 5 4 11 11 O 1.35984 * 120.00125 * 179.97438 * 10 6 5 12 12 S 1.52192 * 113.99991 * 259.08039 * 11 10 6 13 13 O 1.42101 * 104.27768 * 192.10661 * 12 11 10 14 14 O 1.42100 * 104.27857 * 319.96137 * 12 11 10 15 15 C 1.81400 * 104.45009 * 76.03497 * 12 11 10 16 16 H 1.09000 * 112.85001 * 311.19522 * 15 12 11 17 17 C 1.53786 * 113.61292 * 82.50708 * 15 12 11 18 18 C 1.53780 * 87.08038 * 139.98116 * 17 15 12 19 19 H 1.08994 * 113.61627 * 89.11377 * 18 17 15 20 20 C 1.50699 * 113.68595 * 220.00387 * 18 17 15 21 21 O 1.20826 * 120.00191 * 97.53545 * 20 18 17 22 22 O 1.34236 * 120.00136 * 277.53618 * 20 18 17 23 23 C 1.45199 * 116.99974 * 180.02562 * 22 20 18 24 24 C 1.53779 * 87.08078 * 334.56479 * 18 17 15 25 25 C 1.38717 * 120.00002 * 359.97438 * 10 6 5 26 26 C 1.38114 * 120.00141 * 359.73018 * 25 10 6 27 27 H 1.09001 * 109.47624 * 300.00417 * 1 2 3 28 28 H 1.08998 * 109.47112 * 60.00396 * 1 2 3 29 29 H 1.08997 * 109.47504 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47158 * 239.99326 * 2 1 3 31 31 H 1.08997 * 109.46668 * 119.99900 * 2 1 3 32 32 H 1.07997 * 120.00628 * 0.02562 * 5 4 3 33 33 H 1.08990 * 109.47152 * 226.04366 * 7 6 5 34 34 H 0.96703 * 113.99805 * 65.12901 * 8 7 6 35 35 H 1.48503 * 109.99364 * 178.67826 * 9 7 6 36 36 H 1.48493 * 109.99946 * 299.99785 * 9 7 6 37 37 H 1.09004 * 113.60677 * 254.52967 * 17 15 12 38 38 H 1.09000 * 113.61484 * 25.42627 * 17 15 12 39 39 H 1.09006 * 109.46814 * 299.99525 * 23 22 20 40 40 H 1.08993 * 109.47499 * 59.99713 * 23 22 20 41 41 H 1.09000 * 109.47059 * 180.02562 * 23 22 20 42 42 H 1.09007 * 113.61233 * 270.88333 * 24 18 17 43 43 H 1.08997 * 113.61710 * 139.98791 * 24 18 17 44 44 H 1.08008 * 120.00028 * 180.02562 * 25 10 6 45 45 H 1.08000 * 119.99808 * 180.29565 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 3.8844 2.8068 0.0000 6 6 5.2541 2.9878 0.0001 7 6 5.8302 4.3804 0.0001 8 8 6.3562 4.6782 1.2949 9 14 4.4923 5.6058 -0.4236 10 6 6.0988 1.8881 0.0000 11 8 7.4470 2.0662 -0.0005 12 16 8.0947 1.8858 -1.3658 13 8 9.4871 1.8273 -1.0882 14 8 7.4134 0.7752 -1.9329 15 6 7.6882 3.4084 -2.2643 16 1 6.6309 3.6663 -2.2036 17 6 8.6299 4.5817 -1.9456 18 6 8.5743 4.9302 -3.4424 19 1 7.7596 5.6056 -3.7035 20 6 9.9000 5.3645 -4.0125 21 8 10.5937 4.5698 -4.6017 22 8 10.3102 6.6342 -3.8657 23 6 11.5972 6.9818 -4.4410 24 6 8.2508 3.4482 -3.6950 25 6 5.5686 0.6062 0.0005 26 6 4.1994 0.4253 0.0067 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.2266 3.6634 -0.0004 33 1 6.6281 4.4435 -0.7396 34 1 7.1105 4.1290 1.5489 35 1 5.0403 6.9858 -0.3956 36 1 3.9370 5.3069 -1.7680 37 1 8.1809 5.3398 -1.3038 38 1 9.6175 4.2693 -1.6063 39 1 12.3756 6.3682 -3.9872 40 1 11.5748 6.8037 -5.5160 41 1 11.8078 8.0342 -4.2509 42 1 9.1350 2.8259 -3.8340 43 1 7.4961 3.2911 -4.4655 44 1 6.2265 -0.2503 0.0009 45 1 3.7866 -0.5727 0.0119 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_80656_13206342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:50:33 Heat of formation + Delta-G solvation = -185.295375 kcal Electronic energy + Delta-G solvation = -33761.285037 eV Core-core repulsion = 29033.998652 eV Total energy + Delta-G solvation = -4727.286384 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.61393 -41.98651 -40.89615 -39.83860 -38.67756 -38.37325 -37.43556 -37.34442 -37.25068 -33.21726 -32.93121 -30.43042 -30.01618 -28.16094 -27.51177 -27.01159 -24.77616 -24.68328 -23.62294 -22.67323 -21.66795 -20.91761 -19.95986 -19.51157 -19.27282 -18.79361 -18.45232 -18.37823 -17.84623 -17.53012 -17.31603 -17.04370 -16.76570 -16.44636 -16.20252 -15.57216 -15.51722 -15.27793 -14.86879 -14.69707 -14.55403 -14.48633 -14.18206 -14.09803 -14.05212 -13.90186 -13.81486 -13.60107 -13.57352 -13.31277 -13.27102 -13.18925 -13.15735 -12.91491 -12.84765 -12.36526 -12.15848 -12.11208 -11.91201 -11.85452 -11.74968 -11.51606 -11.43515 -11.29733 -10.36583 -9.52629 -5.05653 -1.21324 -0.23925 -0.05393 0.84607 1.03766 1.12996 1.46856 1.57575 1.80233 1.85174 2.15332 2.31642 2.43853 2.67989 2.93137 2.97845 3.14391 3.28262 3.37920 3.55162 3.64813 3.70508 3.74598 3.76804 3.78914 3.82294 3.91427 4.00816 4.10848 4.11870 4.14138 4.16986 4.20096 4.21000 4.31142 4.41947 4.48016 4.55970 4.61564 4.69438 4.69776 4.81311 4.84166 4.87973 5.01516 5.26020 5.28292 6.05235 6.34680 6.61210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.305 6.305 4 C 0.166 3.834 5 C -0.133 4.133 6 C -0.068 4.068 7 C -0.104 4.104 8 O -0.523 6.523 9 Si 0.741 3.259 10 C 0.022 3.978 11 O -0.655 6.655 12 S 2.596 3.404 13 O -0.915 6.915 14 O -0.942 6.942 15 C -0.665 4.665 16 H 0.162 0.838 17 C -0.097 4.097 18 C -0.096 4.096 19 H 0.137 0.863 20 C 0.468 3.532 21 O -0.497 6.497 22 O -0.355 6.355 23 C 0.033 3.967 24 C -0.083 4.083 25 C -0.037 4.037 26 C -0.193 4.193 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.081 0.919 34 H 0.373 0.627 35 H -0.244 1.244 36 H -0.241 1.241 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.149 0.851 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.444 1.372 0.660 6.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.218 6.218 4 C 0.118 3.882 5 C -0.152 4.152 6 C -0.070 4.070 7 C -0.212 4.212 8 O -0.328 6.328 9 Si 0.637 3.363 10 C -0.019 4.019 11 O -0.614 6.614 12 S 2.691 3.309 13 O -0.913 6.913 14 O -0.940 6.940 15 C -0.770 4.770 16 H 0.179 0.821 17 C -0.135 4.135 18 C -0.116 4.116 19 H 0.155 0.845 20 C 0.310 3.690 21 O -0.384 6.384 22 O -0.272 6.272 23 C -0.061 4.061 24 C -0.121 4.121 25 C -0.058 4.058 26 C -0.211 4.211 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.098 0.902 34 H 0.221 0.779 35 H -0.168 1.168 36 H -0.165 1.165 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.167 0.833 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.676 1.764 0.223 6.909 hybrid contribution 1.720 -0.658 -0.673 1.961 sum -4.955 1.106 -0.451 5.097 Atomic orbital electron populations 1.21801 0.91987 1.03401 1.03916 1.22994 0.96575 0.80972 1.02073 1.86153 1.17834 1.30485 1.87336 1.19016 0.83169 0.93503 0.92497 1.20044 0.92841 0.95705 1.06575 1.20217 0.92936 0.95308 0.98587 1.26053 1.06436 0.98833 0.89894 1.86769 1.52272 1.62359 1.31411 0.92306 0.83741 0.76650 0.83580 1.17691 0.76267 0.93969 1.14018 1.85726 1.27461 1.90837 1.57343 1.05601 0.75092 0.76273 0.73967 1.93678 1.30002 1.86120 1.81496 1.93656 1.74271 1.47880 1.78234 1.32462 1.10500 1.21617 1.12464 0.82071 1.22788 0.99803 0.95327 0.95583 1.22420 0.93953 0.98310 0.96945 0.84493 1.23386 0.88104 0.80457 0.77051 1.90712 1.55610 1.53391 1.38701 1.86506 1.38614 1.29820 1.72216 1.23370 0.81683 1.02053 0.98957 1.22603 1.02287 0.95191 0.92055 1.21248 0.95717 0.95831 0.92961 1.21263 0.92847 0.99315 1.07723 0.91171 0.91230 0.89927 0.91320 0.91316 0.83005 0.90189 0.77907 1.16847 1.16535 0.87580 0.86628 0.91523 0.91599 0.87674 0.87117 0.87495 0.83311 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.28 37.16 0.38 0.92 16 2 C 0.05 -0.14 5.46 37.16 0.20 0.06 16 3 O -0.31 0.18 10.14 -19.70 -0.20 -0.02 16 4 C 0.17 -0.05 6.68 -39.24 -0.26 -0.31 16 5 C -0.13 0.08 8.60 -39.45 -0.34 -0.26 16 6 C -0.07 0.00 4.78 -104.49 -0.50 -0.49 16 7 C -0.10 0.09 1.92 36.01 0.07 0.16 16 8 O -0.52 0.04 12.63 -35.23 -0.45 -0.41 16 9 Si 0.74 -1.23 30.15 -169.99 -5.13 -6.36 16 10 C 0.02 0.02 4.96 -39.24 -0.19 -0.17 16 11 O -0.65 -0.88 8.94 -52.01 -0.46 -1.34 16 12 S 2.60 5.46 5.14 -107.50 -0.55 4.91 16 13 O -0.91 -4.74 17.27 -67.04 -1.16 -5.90 16 14 O -0.94 -3.64 15.50 -67.04 -1.04 -4.68 16 15 C -0.67 0.67 2.88 -25.92 -0.07 0.60 16 16 H 0.16 -0.50 5.85 -51.93 -0.30 -0.80 16 17 C -0.10 0.13 6.68 -25.92 -0.17 -0.04 16 18 C -0.10 0.10 4.26 -90.96 -0.39 -0.29 16 19 H 0.14 -0.48 8.14 -51.93 -0.42 -0.90 16 20 C 0.47 0.91 7.49 36.01 0.27 1.18 16 21 O -0.50 -2.42 15.65 -18.75 -0.29 -2.71 16 22 O -0.36 -0.48 10.57 -39.27 -0.41 -0.90 16 23 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 24 C -0.08 0.06 6.99 -25.92 -0.18 -0.12 16 25 C -0.04 -0.03 8.45 -39.45 -0.33 -0.36 16 26 C -0.19 0.12 9.03 -39.45 -0.36 -0.23 16 27 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 29 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 30 H 0.07 -0.26 7.67 -51.93 -0.40 -0.65 16 31 H 0.07 -0.27 7.65 -51.93 -0.40 -0.66 16 32 H 0.15 -0.41 5.09 -52.49 -0.27 -0.68 16 33 H 0.08 -0.17 2.30 -51.93 -0.12 -0.29 16 34 H 0.37 -0.64 8.62 45.56 0.39 -0.25 16 35 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 36 H -0.24 0.27 7.11 56.52 0.40 0.67 16 37 H 0.11 -0.35 7.02 -51.93 -0.36 -0.72 16 38 H 0.12 -0.07 7.38 -51.93 -0.38 -0.46 16 39 H 0.07 -0.02 8.13 -51.93 -0.42 -0.44 16 40 H 0.07 -0.03 8.13 -51.93 -0.42 -0.46 16 41 H 0.10 -0.30 8.14 -51.93 -0.42 -0.73 16 42 H 0.11 0.05 7.40 -51.92 -0.38 -0.34 16 43 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 44 H 0.15 0.01 7.76 -52.48 -0.41 -0.39 16 45 H 0.15 -0.44 6.29 -52.49 -0.33 -0.77 16 LS Contribution 377.38 15.07 5.69 5.69 Total: 0.00 -10.10 377.38 -10.36 -20.46 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: -5.54 Total: -10.42 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.81 Total: 1.69 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -4.02 Total: -15.97 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: -5.13 Total: -6.36 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -0.55 Total: 4.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -10.10 -10.36 -20.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80656_13206342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.839 kcal (2) G-P(sol) polarization free energy of solvation -10.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds