Wall clock time and date at job start Mon Mar 8 2021 13:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47265 * 2 1 4 4 C 1.35983 * 116.99789 * 180.02562 * 3 2 1 5 5 C 1.38674 * 119.99633 * 179.97438 * 4 3 2 6 6 C 1.38159 * 119.99583 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.99598 * 179.97438 * 6 5 4 8 8 O 1.42900 * 109.47212 * 81.51904 * 7 6 5 9 9 Si 1.86296 * 109.47492 * 321.51710 * 7 6 5 10 10 C 1.38673 * 120.00066 * 0.02562 * 6 5 4 11 11 O 1.35991 * 119.99638 * 180.02562 * 10 6 5 12 12 S 1.52197 * 113.99790 * 261.25400 * 11 10 6 13 13 O 1.42104 * 104.28089 * 318.03616 * 12 11 10 14 14 O 1.42102 * 104.27916 * 190.17751 * 12 11 10 15 15 C 1.81398 * 104.45087 * 74.10734 * 12 11 10 16 16 H 1.09001 * 112.85363 * 311.19823 * 15 12 11 17 17 C 1.54052 * 113.61980 * 82.50212 * 15 12 11 18 18 C 1.53778 * 86.98689 * 139.97789 * 17 15 12 19 19 H 1.09001 * 113.61954 * 219.98031 * 18 17 15 20 20 O 1.42910 * 113.61113 * 89.16461 * 18 17 15 21 21 C 1.42901 * 113.99918 * 110.86378 * 20 18 17 22 22 C 1.50700 * 109.46663 * 180.02562 * 21 20 18 23 23 C 1.38234 * 119.99694 * 269.72146 * 22 21 20 24 24 C 1.38244 * 119.99573 * 179.79123 * 23 22 21 25 25 C 1.38231 * 120.00196 * 0.46711 * 24 23 22 26 26 C 1.38236 * 119.99888 * 359.76786 * 25 24 23 27 27 C 1.38229 * 120.00118 * 90.00464 * 22 21 20 28 28 C 1.53776 * 87.17471 * 334.57460 * 18 17 15 29 29 C 1.38721 * 120.00109 * 0.27216 * 10 6 5 30 30 C 1.38109 * 119.99748 * 359.44846 * 29 10 6 31 31 H 1.08995 * 109.46969 * 300.00885 * 1 2 3 32 32 H 1.09007 * 109.46321 * 60.00355 * 1 2 3 33 33 H 1.08995 * 109.47470 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47662 * 239.99336 * 2 1 3 35 35 H 1.09000 * 109.46960 * 119.99646 * 2 1 3 36 36 H 1.08002 * 120.00412 * 0.04283 * 5 4 3 37 37 H 1.09004 * 109.47303 * 201.51316 * 7 6 5 38 38 H 0.96700 * 113.99788 * 55.26653 * 8 7 6 39 39 H 1.48498 * 110.00007 * 300.00196 * 9 7 6 40 40 H 1.48504 * 110.00072 * 61.32086 * 9 7 6 41 41 H 1.09003 * 113.60956 * 25.47481 * 17 15 12 42 42 H 1.09003 * 113.69946 * 254.49811 * 17 15 12 43 43 H 1.08998 * 109.46676 * 299.99682 * 21 20 18 44 44 H 1.09000 * 109.47138 * 59.99928 * 21 20 18 45 45 H 1.07999 * 120.00207 * 0.02562 * 23 22 21 46 46 H 1.08002 * 119.99541 * 180.25480 * 24 23 22 47 47 H 1.07995 * 120.00186 * 179.78589 * 25 24 23 48 48 H 1.07998 * 120.00053 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.00299 * 359.97161 * 27 22 21 50 50 H 1.09000 * 113.61717 * 140.02074 * 28 18 17 51 51 H 1.08997 * 113.61575 * 270.92069 * 28 18 17 52 52 H 1.07995 * 119.99831 * 179.70006 * 29 10 6 53 53 H 1.08001 * 119.99836 * 180.25344 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3545 1.5254 -0.0005 5 6 3.8846 2.8068 -0.0011 6 6 5.2542 2.9878 -0.0022 7 6 5.8302 4.3803 -0.0034 8 8 5.8297 4.8972 1.3288 9 14 4.7964 5.4792 -1.0962 10 6 6.0989 1.8880 -0.0033 11 8 7.4471 2.0662 -0.0038 12 16 8.0878 1.9385 -1.3784 13 8 7.4354 0.8216 -1.9669 14 8 9.4838 1.9157 -1.1137 15 6 7.6276 3.4691 -2.2363 16 1 6.5636 3.6933 -2.1607 17 6 8.5376 4.6648 -1.8963 18 6 8.4568 5.0452 -3.3841 19 1 9.4020 5.3982 -3.7965 20 8 7.3593 5.9058 -3.6960 21 6 7.7462 7.2328 -4.0587 22 6 6.5165 8.0485 -4.3645 23 6 6.0208 8.0945 -5.6541 24 6 4.8903 8.8394 -5.9338 25 6 4.2612 9.5458 -4.9259 26 6 4.7597 9.5037 -3.6373 27 6 5.8877 8.7554 -3.3567 28 6 8.1760 3.5606 -3.6701 29 6 5.5687 0.6061 -0.0089 30 6 4.1995 0.4252 -0.0020 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8898 35 1 1.8933 -0.5138 0.8900 36 1 3.2267 3.6634 -0.0004 37 1 6.8524 4.3505 -0.3810 38 1 6.2890 4.3361 1.9686 39 1 4.7889 4.9524 -2.4846 40 1 3.4082 5.5538 -0.5739 41 1 9.5374 4.3745 -1.5735 42 1 8.0728 5.3944 -1.2331 43 1 8.2897 7.6913 -3.2326 44 1 8.3870 7.1965 -4.9397 45 1 6.5145 7.5456 -6.4423 46 1 4.5006 8.8720 -6.9406 47 1 3.3800 10.1305 -5.1451 48 1 4.2680 10.0553 -2.8497 49 1 6.2774 8.7227 -2.3500 50 1 7.4194 3.3993 -4.4380 51 1 9.0771 2.9690 -3.8315 52 1 6.2265 -0.2503 -0.0146 53 1 3.7866 -0.5728 -0.0023 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80656_15608174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:34 Heat of formation + Delta-G solvation = -114.254935 kcal Electronic energy + Delta-G solvation = -40550.023995 eV Core-core repulsion = 35448.746688 eV Total energy + Delta-G solvation = -5101.277307 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.142 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.71026 -40.95947 -40.81667 -39.92899 -38.80206 -38.57858 -37.46925 -37.39286 -36.98000 -33.21223 -32.88545 -32.60798 -31.73083 -30.50594 -28.10062 -27.21995 -26.92030 -26.30432 -24.83885 -24.64151 -23.42461 -22.88654 -22.20442 -21.86074 -20.99988 -19.88185 -19.56083 -19.14695 -18.81254 -18.44320 -17.90094 -17.56414 -17.29363 -17.25663 -16.75692 -16.61196 -16.45750 -16.22187 -15.84664 -15.73350 -15.58253 -15.45525 -15.23595 -14.81221 -14.66858 -14.46359 -14.22651 -14.17472 -14.13994 -14.07045 -13.95676 -13.77403 -13.64599 -13.58150 -13.47625 -13.44081 -13.33434 -13.23563 -13.16014 -12.95521 -12.37517 -12.27197 -12.09445 -12.00963 -11.81993 -11.81469 -11.69778 -11.58592 -11.25999 -11.20961 -10.53002 -10.50221 -9.76774 -9.71244 -9.63151 -5.05649 -1.26452 -0.36424 -0.18696 0.38341 0.55446 0.76646 1.07621 1.53402 1.73913 1.86124 2.04249 2.31206 2.46434 2.58613 2.85006 3.01077 3.05812 3.22974 3.30015 3.45834 3.52301 3.61591 3.68890 3.72042 3.78897 3.87414 3.95038 3.96476 4.01083 4.03531 4.19550 4.21521 4.26265 4.28064 4.34967 4.41892 4.43927 4.45037 4.53635 4.65054 4.70317 4.71159 4.73492 4.74628 4.75339 4.79554 4.81322 4.84477 4.85417 4.86127 5.14417 5.14988 5.20144 5.21778 5.60370 5.67910 5.71127 6.03519 6.14888 6.25526 6.45254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.038 3.962 3 O -0.322 6.322 4 C 0.156 3.844 5 C -0.152 4.152 6 C -0.079 4.079 7 C -0.096 4.096 8 O -0.530 6.530 9 Si 0.779 3.221 10 C 0.015 3.985 11 O -0.655 6.655 12 S 2.589 3.411 13 O -0.976 6.976 14 O -0.946 6.946 15 C -0.646 4.646 16 H 0.149 0.851 17 C -0.139 4.139 18 C 0.084 3.916 19 H 0.120 0.880 20 O -0.372 6.372 21 C 0.097 3.903 22 C -0.106 4.106 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.109 4.109 28 C -0.111 4.111 29 C -0.054 4.054 30 C -0.184 4.184 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.382 0.618 39 H -0.254 1.254 40 H -0.274 1.274 41 H 0.129 0.871 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.147 0.853 50 H 0.099 0.901 51 H 0.123 0.877 52 H 0.157 0.843 53 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 2.636 -1.256 3.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.036 4.036 3 O -0.236 6.236 4 C 0.108 3.892 5 C -0.171 4.171 6 C -0.081 4.081 7 C -0.204 4.204 8 O -0.337 6.337 9 Si 0.679 3.321 10 C -0.027 4.027 11 O -0.614 6.614 12 S 2.689 3.311 13 O -0.974 6.974 14 O -0.944 6.944 15 C -0.756 4.756 16 H 0.167 0.833 17 C -0.177 4.177 18 C 0.025 3.975 19 H 0.138 0.862 20 O -0.291 6.291 21 C 0.022 3.978 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.157 4.157 25 C -0.146 4.146 26 C -0.152 4.152 27 C -0.127 4.127 28 C -0.150 4.150 29 C -0.074 4.074 30 C -0.203 4.203 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.108 0.892 38 H 0.232 0.768 39 H -0.179 1.179 40 H -0.200 1.200 41 H 0.147 0.853 42 H 0.132 0.868 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.152 0.848 48 H 0.159 0.841 49 H 0.165 0.835 50 H 0.118 0.882 51 H 0.141 0.859 52 H 0.175 0.825 53 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.203 2.602 -1.723 3.820 hybrid contribution 0.217 -1.440 0.419 1.515 sum -1.986 1.163 -1.303 2.645 Atomic orbital electron populations 1.21834 0.91483 1.04413 1.03264 1.23290 0.97067 0.79900 1.03350 1.86153 1.17660 1.32445 1.87307 1.19143 0.83611 0.93664 0.92784 1.20385 0.93719 0.96583 1.06384 1.20318 0.92812 0.95852 0.99160 1.25906 1.07257 0.94565 0.92689 1.86712 1.80507 1.49956 1.16543 0.92510 0.76716 0.88234 0.74623 1.17819 0.76453 0.94244 1.14171 1.85677 1.27291 1.91153 1.57299 1.05649 0.74396 0.77303 0.73776 1.93597 1.75620 1.50275 1.77905 1.93613 1.30961 1.87531 1.82335 1.32357 1.11368 1.19192 1.12687 0.83295 1.23662 0.99630 0.93924 1.00457 1.22846 0.91494 0.89524 0.93653 0.86215 1.87977 1.31483 1.21799 1.87857 1.21593 0.93639 0.81461 1.01156 1.19824 0.98091 0.98797 0.93912 1.21309 0.96469 0.98615 0.96853 1.21424 0.96276 0.97815 1.00217 1.21520 1.00304 0.99180 0.93548 1.21520 0.96804 0.99567 0.97333 1.21448 0.95376 0.95987 0.99842 1.23035 1.02820 0.98199 0.90957 1.21483 0.96374 0.95990 0.93504 1.21529 0.92274 1.00218 1.06275 0.91789 0.91944 0.87988 0.90124 0.89843 0.83707 0.89166 0.76817 1.17921 1.20001 0.85325 0.86814 0.89775 0.90807 0.85282 0.85054 0.84845 0.84075 0.83496 0.88237 0.85924 0.82527 0.80715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.67 10.28 71.98 0.74 1.41 16 2 C 0.04 -0.11 5.46 71.98 0.39 0.28 16 3 O -0.32 -1.31 10.14 -93.36 -0.95 -2.26 16 4 C 0.16 0.77 6.68 22.49 0.15 0.92 16 5 C -0.15 -1.00 8.59 22.36 0.19 -0.80 16 6 C -0.08 -0.44 4.26 -19.78 -0.08 -0.53 16 7 C -0.10 -0.26 2.04 71.24 0.15 -0.12 16 8 O -0.53 -1.10 12.68 -148.98 -1.89 -2.99 16 9 Si 0.78 2.49 29.51 68.60 2.02 4.51 16 10 C 0.02 0.10 4.92 22.49 0.11 0.21 16 11 O -0.66 -4.23 9.15 -62.54 -0.57 -4.80 16 12 S 2.59 16.95 5.13 -56.49 -0.29 16.66 16 13 O -0.98 -10.75 15.70 -118.57 -1.86 -12.61 16 14 O -0.95 -10.16 17.28 -118.57 -2.05 -12.21 16 15 C -0.65 -0.48 2.71 31.21 0.08 -0.40 16 16 H 0.15 0.27 4.03 -2.39 -0.01 0.26 16 17 C -0.14 0.57 6.76 31.21 0.21 0.78 16 18 C 0.08 -0.41 4.36 31.12 0.14 -0.27 16 19 H 0.12 -1.21 7.88 -2.39 -0.02 -1.23 16 20 O -0.37 0.52 10.26 -148.98 -1.53 -1.01 16 21 C 0.10 -0.43 5.91 71.24 0.42 0.00 16 22 C -0.11 0.04 5.51 -19.87 -0.11 -0.07 16 23 C -0.11 -0.09 9.70 22.27 0.22 0.12 16 24 C -0.14 -0.13 10.05 22.27 0.22 0.09 16 25 C -0.13 -0.05 10.05 22.27 0.22 0.18 16 26 C -0.13 0.09 10.05 22.27 0.22 0.31 16 27 C -0.11 0.13 9.70 22.27 0.22 0.35 16 28 C -0.11 0.28 7.50 31.12 0.23 0.52 16 29 C -0.05 -0.27 8.54 22.35 0.19 -0.08 16 30 C -0.18 -0.41 9.03 22.35 0.20 -0.20 16 31 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 33 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H 0.08 -0.43 7.66 -2.39 -0.02 -0.45 16 35 H 0.08 -0.49 7.66 -2.39 -0.02 -0.51 16 36 H 0.15 1.00 5.87 -2.91 -0.02 0.98 16 37 H 0.09 -0.02 2.50 -2.38 -0.01 -0.03 16 38 H 0.38 -0.98 9.02 -74.06 -0.67 -1.65 16 39 H -0.25 -1.74 6.91 99.48 0.69 -1.05 16 40 H -0.27 -2.11 6.47 99.48 0.64 -1.46 16 41 H 0.13 -0.75 7.43 -2.39 -0.02 -0.77 16 42 H 0.11 -0.75 6.81 -2.39 -0.02 -0.77 16 43 H 0.08 -0.70 8.08 -2.39 -0.02 -0.71 16 44 H 0.07 -0.50 8.08 -2.39 -0.02 -0.52 16 45 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 46 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 47 H 0.13 -0.38 8.06 -2.91 -0.02 -0.41 16 48 H 0.14 -0.65 8.06 -2.91 -0.02 -0.67 16 49 H 0.15 -0.89 8.06 -2.91 -0.02 -0.91 16 50 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 51 H 0.12 -0.73 8.10 -2.39 -0.02 -0.75 16 52 H 0.16 0.48 7.84 -2.91 -0.02 0.45 16 53 H 0.18 -0.73 6.29 -2.91 -0.02 -0.75 16 Total: 0.00 -22.26 435.44 -2.75 -25.01 By element: Atomic # 1 Polarization: -13.22 SS G_CDS: 0.25 Total: -12.97 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 4.12 Total: 2.68 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -8.85 Total: -35.89 kcal Atomic # 14 Polarization: 2.49 SS G_CDS: 2.02 Total: 4.51 kcal Atomic # 16 Polarization: 16.95 SS G_CDS: -0.29 Total: 16.66 kcal Total: -22.26 -2.75 -25.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80656_15608174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.245 kcal (2) G-P(sol) polarization free energy of solvation -22.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds