Wall clock time and date at job start Mon Mar 8 2021 13:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45197 * 109.46980 * 2 1 4 4 C 1.34230 * 117.00117 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99804 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99863 * 179.97438 * 4 3 2 7 7 H 1.08994 * 112.90593 * 48.75215 * 6 4 3 8 8 C 1.53789 * 113.61085 * 180.02562 * 6 4 3 9 9 C 1.53777 * 87.07989 * 139.98099 * 8 6 4 10 10 F 1.39900 * 113.61173 * 89.19757 * 9 8 6 11 11 C 1.52997 * 113.61643 * 220.01788 * 9 8 6 12 12 S 1.81395 * 109.47215 * 180.02562 * 11 9 8 13 13 O 1.42096 * 110.54574 * 68.37377 * 12 11 9 14 14 O 1.42105 * 110.54271 * 291.62152 * 12 11 9 15 15 O 1.52203 * 104.44951 * 180.02562 * 12 11 9 16 16 C 1.35982 * 114.00560 * 76.28893 * 15 12 11 17 17 C 1.38670 * 120.00201 * 260.38969 * 16 15 12 18 18 C 1.50695 * 120.00161 * 359.94852 * 17 16 15 19 19 O 1.42903 * 109.47603 * 286.08282 * 18 17 16 20 20 Si 1.86297 * 109.47365 * 166.08406 * 18 17 16 21 21 C 1.38153 * 119.99973 * 179.97438 * 17 16 15 22 22 C 1.38676 * 120.00135 * 0.02562 * 21 17 16 23 23 O 1.35976 * 120.00394 * 180.02562 * 22 21 17 24 24 C 1.42895 * 117.00264 * 179.97438 * 23 22 21 25 25 C 1.53007 * 109.47373 * 179.97438 * 24 23 22 26 26 C 1.38722 * 119.99432 * 0.26934 * 22 21 17 27 27 C 1.38102 * 120.00220 * 359.45291 * 26 22 21 28 28 C 1.53775 * 113.61477 * 277.49683 * 6 4 3 29 29 H 1.08998 * 109.46761 * 60.00300 * 1 2 3 30 30 H 1.09003 * 109.46731 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47282 * 299.99819 * 1 2 3 32 32 H 1.08991 * 109.47318 * 239.99728 * 2 1 3 33 33 H 1.09002 * 109.47230 * 119.99658 * 2 1 3 34 34 H 1.09004 * 113.61368 * 25.43287 * 8 6 4 35 35 H 1.09000 * 113.68661 * 254.53942 * 8 6 4 36 36 H 1.09000 * 109.47285 * 59.99753 * 11 9 8 37 37 H 1.09004 * 109.46744 * 300.00136 * 11 9 8 38 38 H 1.09004 * 109.47071 * 46.08781 * 18 17 16 39 39 H 0.96702 * 113.99382 * 65.12383 * 19 18 17 40 40 H 1.48505 * 109.99966 * 300.00327 * 20 18 17 41 41 H 1.48503 * 110.00125 * 61.31985 * 20 18 17 42 42 H 1.08002 * 120.00412 * 180.02562 * 21 17 16 43 43 H 1.09001 * 109.47112 * 299.99248 * 24 23 22 44 44 H 1.08998 * 109.47328 * 59.99613 * 24 23 22 45 45 H 1.08998 * 109.46976 * 59.99683 * 25 24 23 46 46 H 1.08993 * 109.46964 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.46620 * 299.99834 * 25 24 23 48 48 H 1.08005 * 119.99285 * 179.71002 * 26 22 21 49 49 H 1.08007 * 120.00046 * 180.26808 * 27 26 22 50 50 H 1.08993 * 113.61500 * 105.47651 * 28 6 4 51 51 H 1.08999 * 113.61884 * 334.56930 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.4707 3.5830 0.7543 8 6 5.4582 2.9682 0.0001 9 6 5.3565 4.1421 -0.9880 10 9 5.2850 5.3933 -0.3662 11 6 6.3987 4.0935 -2.1070 12 16 6.1783 5.5233 -3.2013 13 8 6.5238 6.7254 -2.5268 14 8 4.9607 5.4138 -3.9257 15 8 7.2599 5.3619 -4.2598 16 6 6.9810 4.4159 -5.1959 17 6 7.5455 3.1533 -5.0954 18 6 8.4690 2.8298 -3.9494 19 8 9.7295 3.4701 -4.1579 20 14 8.7176 0.9860 -3.8534 21 6 7.2617 2.1920 -6.0463 22 6 6.4127 2.4899 -7.1015 23 8 6.1329 1.5437 -8.0371 24 6 5.2501 1.9195 -9.0961 25 6 5.0565 0.7339 -10.0437 26 6 5.8529 3.7549 -7.2053 27 6 6.1321 4.7140 -6.2517 28 6 3.9868 3.5762 -1.3973 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.9128 2.0749 -0.4284 35 1 5.8907 3.2434 0.9620 36 1 6.2742 3.1745 -2.6798 37 1 7.3986 4.1188 -1.6736 38 1 8.0302 3.1862 -3.0174 39 1 9.6876 4.4360 -4.1398 40 1 7.4141 0.3083 -3.6367 41 1 9.3447 0.4922 -5.1057 42 1 7.7010 1.2085 -5.9678 43 1 4.2867 2.2128 -8.6792 44 1 5.6784 2.7575 -9.6460 45 1 4.6284 -0.1044 -9.4940 46 1 4.3828 1.0205 -10.8511 47 1 6.0201 0.4410 -10.4606 48 1 5.1954 3.9884 -8.0298 49 1 5.6927 5.6976 -6.3302 50 1 3.2299 4.3426 -1.5633 51 1 4.0394 2.8492 -2.2077 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80656_16464788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:44:38 Heat of formation + Delta-G solvation = -235.088812 kcal Electronic energy + Delta-G solvation = -41097.282338 eV Core-core repulsion = 35587.307534 eV Total energy + Delta-G solvation = -5509.974803 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.25810 -42.73284 -41.87569 -40.97250 -39.40864 -38.77958 -38.60853 -37.57815 -37.49758 -37.38308 -33.35970 -32.97567 -32.77686 -32.06387 -30.46410 -27.61535 -27.32047 -26.78085 -24.88390 -24.63612 -24.00203 -22.94012 -22.36386 -21.61856 -20.91817 -19.90901 -19.54681 -19.30428 -18.95821 -18.71607 -18.39801 -17.83641 -17.65566 -17.57968 -17.28005 -17.17295 -16.73956 -16.40881 -16.26180 -16.15284 -15.69072 -15.63594 -15.51928 -15.35618 -14.72051 -14.70681 -14.59320 -14.50671 -14.34476 -14.15840 -13.99260 -13.86282 -13.71181 -13.68435 -13.56904 -13.48138 -13.43844 -13.21052 -13.11505 -13.00426 -12.97026 -12.94611 -12.55857 -12.50659 -12.36428 -12.23651 -11.95040 -11.79939 -11.59773 -11.57679 -11.48936 -11.40588 -11.26325 -10.47258 -9.63058 -4.91582 -1.39752 -0.34424 -0.18927 0.73117 0.97081 1.14125 1.53546 1.56016 1.83615 1.89579 2.04851 2.22586 2.52235 2.64347 2.67898 2.82022 3.09225 3.14320 3.19413 3.27088 3.42442 3.57459 3.66603 3.70849 3.75643 3.80361 3.85087 3.95293 3.96009 4.01203 4.01997 4.04212 4.16519 4.27188 4.28649 4.30052 4.32246 4.40500 4.41264 4.59460 4.68730 4.73738 4.74825 4.77515 4.79694 4.80810 4.85159 4.87240 5.00564 5.10543 5.15745 5.20735 5.38451 6.03653 6.44617 6.57889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.476 3.524 5 O -0.527 6.527 6 C -0.109 4.109 7 H 0.152 0.848 8 C -0.115 4.115 9 C 0.096 3.904 10 F -0.184 7.184 11 C -0.675 4.675 12 S 2.589 3.411 13 O -0.948 6.948 14 O -0.957 6.957 15 O -0.653 6.653 16 C 0.011 3.989 17 C -0.069 4.069 18 C -0.117 4.117 19 O -0.533 6.533 20 Si 0.798 3.202 21 C -0.161 4.161 22 C 0.161 3.839 23 O -0.323 6.323 24 C 0.038 3.962 25 C -0.154 4.154 26 C -0.187 4.187 27 C -0.047 4.047 28 C -0.150 4.150 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.178 0.822 37 H 0.194 0.806 38 H 0.104 0.896 39 H 0.380 0.620 40 H -0.247 1.247 41 H -0.282 1.282 42 H 0.144 0.856 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.174 0.826 49 H 0.158 0.842 50 H 0.111 0.889 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 -4.665 -1.486 5.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.319 3.681 5 O -0.416 6.416 6 C -0.128 4.128 7 H 0.169 0.831 8 C -0.153 4.153 9 C 0.077 3.923 10 F -0.165 7.165 11 C -0.802 4.802 12 S 2.686 3.314 13 O -0.946 6.946 14 O -0.956 6.956 15 O -0.612 6.612 16 C -0.031 4.031 17 C -0.072 4.072 18 C -0.225 4.225 19 O -0.340 6.340 20 Si 0.697 3.303 21 C -0.179 4.179 22 C 0.113 3.887 23 O -0.236 6.236 24 C -0.035 4.035 25 C -0.211 4.211 26 C -0.206 4.206 27 C -0.067 4.067 28 C -0.188 4.188 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.196 0.804 37 H 0.211 0.789 38 H 0.121 0.879 39 H 0.230 0.770 40 H -0.172 1.172 41 H -0.208 1.208 42 H 0.161 0.839 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.081 0.919 48 H 0.192 0.808 49 H 0.175 0.825 50 H 0.130 0.870 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.721 -5.749 -2.140 6.711 hybrid contribution -0.601 1.296 -0.347 1.470 sum -3.321 -4.453 -2.487 6.087 Atomic orbital electron populations 1.21837 0.90921 1.04264 1.03690 1.23284 0.96805 0.79141 1.02745 1.86530 1.24184 1.33713 1.83306 1.23623 0.80693 0.92351 0.71387 1.90675 1.60950 1.43690 1.46314 1.22593 0.97843 0.90955 1.01399 0.83069 1.23653 0.93270 0.97193 1.01220 1.21316 0.95704 0.81989 0.93328 1.92995 1.97086 1.42533 1.83845 1.31604 1.11516 1.23666 1.13382 1.05615 0.73670 0.76807 0.75302 1.93648 1.82760 1.43016 1.75172 1.93629 1.46762 1.87255 1.67920 1.85727 1.67052 1.60647 1.47796 1.17817 1.05865 0.86359 0.93055 1.20369 0.97307 0.91204 0.98360 1.26087 0.86215 1.14526 0.95638 1.86740 1.26669 1.25307 1.95282 0.92415 0.82860 0.69423 0.85642 1.20267 1.02306 1.00509 0.94843 1.19145 0.92500 0.88428 0.88620 1.86148 1.64061 1.37889 1.35519 1.23286 0.93084 1.00367 0.86809 1.21837 1.03353 0.97213 0.98659 1.21508 1.04758 0.91738 1.02554 1.21483 0.93167 1.01387 0.90650 1.23883 0.95982 1.02041 0.96857 0.91360 0.88511 0.91313 0.91134 0.91064 0.85113 0.86465 0.80398 0.78869 0.87906 0.77004 1.17213 1.20842 0.83898 0.89873 0.89988 0.91831 0.88060 0.91929 0.80835 0.82482 0.87035 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.42 16 3 O -0.36 -0.80 10.22 -51.42 -0.53 -1.32 16 4 C 0.48 0.96 7.48 71.24 0.53 1.49 16 5 O -0.53 -3.50 15.65 21.97 0.34 -3.16 16 6 C -0.11 0.33 4.24 -11.01 -0.05 0.28 16 7 H 0.15 -0.88 8.14 -2.39 -0.02 -0.90 16 8 C -0.12 0.58 6.86 31.12 0.21 0.79 16 9 C 0.10 -0.22 1.62 -10.28 -0.02 -0.23 16 10 F -0.18 -0.58 16.28 44.97 0.73 0.15 16 11 C -0.67 2.89 3.73 71.98 0.27 3.16 16 12 S 2.59 10.60 4.90 -56.49 -0.28 10.32 16 13 O -0.95 -11.29 17.54 -118.57 -2.08 -13.37 16 14 O -0.96 -6.43 15.61 -118.57 -1.85 -8.28 16 15 O -0.65 -1.93 8.95 -62.44 -0.56 -2.49 16 16 C 0.01 0.03 4.93 22.49 0.11 0.14 16 17 C -0.07 -0.13 4.78 -19.78 -0.09 -0.23 16 18 C -0.12 0.19 1.98 71.23 0.14 0.33 16 19 O -0.53 -0.16 12.63 -148.98 -1.88 -2.05 16 20 Si 0.80 -1.83 30.36 68.60 2.08 0.25 16 21 C -0.16 -0.53 8.59 22.35 0.19 -0.34 16 22 C 0.16 0.37 6.69 22.49 0.15 0.52 16 23 O -0.32 -0.62 10.14 -93.28 -0.95 -1.56 16 24 C 0.04 -0.18 5.46 71.98 0.39 0.22 16 25 C -0.15 0.88 10.28 71.98 0.74 1.62 16 26 C -0.19 0.08 9.03 22.35 0.20 0.28 16 27 C -0.05 -0.10 8.49 22.35 0.19 0.09 16 28 C -0.15 0.44 7.07 31.11 0.22 0.66 16 29 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 33 H 0.07 -0.02 8.13 -2.39 -0.02 -0.04 16 34 H 0.13 -0.84 7.39 -2.39 -0.02 -0.86 16 35 H 0.12 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H 0.18 -1.58 6.35 -2.39 -0.02 -1.60 16 37 H 0.19 -2.08 7.11 -2.39 -0.02 -2.10 16 38 H 0.10 -0.77 3.28 -2.38 -0.01 -0.78 16 39 H 0.38 -1.29 8.62 -74.06 -0.64 -1.93 16 40 H -0.25 0.22 7.11 99.48 0.71 0.93 16 41 H -0.28 -1.20 6.84 99.48 0.68 -0.52 16 42 H 0.14 0.45 4.92 -2.91 -0.01 0.44 16 43 H 0.08 -0.62 7.67 -2.39 -0.02 -0.63 16 44 H 0.08 -0.60 7.65 -2.39 -0.02 -0.62 16 45 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 47 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 48 H 0.17 -1.11 6.29 -2.91 -0.02 -1.13 16 49 H 0.16 0.02 7.85 -2.91 -0.02 0.00 16 50 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 51 H 0.12 -0.62 7.91 -2.39 -0.02 -0.64 16 Total: 0.00 -25.21 428.53 -0.21 -25.42 By element: Atomic # 1 Polarization: -14.87 SS G_CDS: 0.37 Total: -14.51 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 4.38 Total: 10.60 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -7.50 Total: -32.24 kcal Atomic # 9 Polarization: -0.58 SS G_CDS: 0.73 Total: 0.15 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: 2.08 Total: 0.25 kcal Atomic # 16 Polarization: 10.60 SS G_CDS: -0.28 Total: 10.32 kcal Total: -25.21 -0.21 -25.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80656_16464788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.665 kcal (2) G-P(sol) polarization free energy of solvation -25.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds