Wall clock time and date at job start Mon Mar 8 2021 11:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99588 * 2 1 4 4 O 1.20829 * 120.00489 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00033 * 180.02562 * 3 2 1 6 6 H 1.09006 * 112.84861 * 48.80405 * 5 3 2 7 7 C 1.53775 * 113.61839 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.08368 * 140.06443 * 7 5 3 9 9 H 1.09001 * 113.61105 * 89.20047 * 8 7 5 10 10 S 1.81398 * 113.61423 * 220.01745 * 8 7 5 11 11 O 1.42103 * 110.54275 * 68.37794 * 10 8 7 12 12 O 1.42100 * 110.54548 * 291.62723 * 10 8 7 13 13 N 1.65598 * 104.44977 * 179.97438 * 10 8 7 14 14 C 1.47080 * 120.88115 * 90.00199 * 13 10 8 15 15 C 1.53243 * 108.51996 * 231.20769 * 14 13 10 16 16 N 1.46895 * 109.34185 * 306.17014 * 15 14 13 17 17 C 1.39619 * 111.00267 * 187.25632 * 16 15 14 18 18 C 1.34096 * 125.23813 * 179.97438 * 17 16 15 19 19 C 1.38590 * 114.71762 * 179.80497 * 18 17 16 20 20 C 1.33228 * 114.98377 * 0.43349 * 19 18 17 21 21 C 1.50699 * 125.12820 * 179.85680 * 20 19 18 22 22 O 1.42892 * 109.47249 * 299.72070 * 21 20 19 23 23 Si 1.86298 * 109.47032 * 179.71455 * 21 20 19 24 24 S 1.75860 * 109.74369 * 359.59049 * 20 19 18 25 25 C 1.46901 * 111.27239 * 63.10161 * 16 15 14 26 26 C 1.47080 * 120.88204 * 270.02433 * 13 10 8 27 27 C 1.53777 * 87.08218 * 334.56765 * 8 7 5 28 28 H 1.09001 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47407 * 299.99334 * 1 2 3 30 30 H 1.08999 * 109.47426 * 60.00007 * 1 2 3 31 31 H 1.08998 * 113.61578 * 25.51210 * 7 5 3 32 32 H 1.09001 * 113.68945 * 254.62892 * 7 5 3 33 33 H 1.09002 * 109.63092 * 111.49729 * 14 13 10 34 34 H 1.09003 * 109.78609 * 351.00895 * 14 13 10 35 35 H 1.09007 * 109.49011 * 186.20434 * 15 14 13 36 36 H 1.09003 * 109.49325 * 66.13483 * 15 14 13 37 37 H 1.07993 * 122.64230 * 0.04045 * 18 17 16 38 38 H 1.07993 * 122.50600 * 180.27719 * 19 18 17 39 39 H 1.09004 * 109.46453 * 59.72138 * 21 20 19 40 40 H 0.96703 * 114.00176 * 299.99748 * 22 21 20 41 41 H 1.48506 * 109.99834 * 58.68765 * 23 21 20 42 42 H 1.48502 * 110.00011 * 180.02562 * 23 21 20 43 43 H 1.08997 * 109.48745 * 56.85568 * 25 16 15 44 44 H 1.08991 * 109.49235 * 176.93591 * 25 16 15 45 45 H 1.08997 * 109.62871 * 248.50034 * 26 13 10 46 46 H 1.09001 * 109.62997 * 8.88887 * 26 13 10 47 47 H 1.08994 * 113.61829 * 139.97661 * 27 8 7 48 48 H 1.09000 * 113.61663 * 270.88364 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0233 0.6366 -0.7568 7 6 4.1076 2.7143 0.0001 8 6 5.1827 2.2258 0.9852 9 1 6.0822 1.8491 0.4983 10 16 5.5430 3.4084 2.3128 11 8 4.4328 3.5242 3.1922 12 8 6.1880 4.5622 1.7913 13 7 6.7088 2.6645 3.2236 14 6 8.1362 2.8547 2.9243 15 6 8.8003 1.4772 2.8241 16 7 8.5184 0.7112 4.0454 17 6 9.2396 -0.4842 4.0641 18 6 9.1973 -1.3981 5.0444 19 6 10.0000 -2.5086 4.8365 20 6 10.6967 -2.4946 3.7010 21 6 11.6397 -3.5796 3.2488 22 8 12.6871 -3.7310 4.2090 23 14 12.3716 -3.1184 1.5988 24 16 10.3442 -1.0225 2.8058 25 6 7.0789 0.4600 4.1967 26 6 6.3444 1.7958 4.3531 27 6 4.1936 1.1220 1.3952 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 3.4179 3.4400 0.4310 32 1 4.5090 3.0317 -0.9623 33 1 8.6045 3.4296 3.7233 34 1 8.2475 3.3845 1.9782 35 1 9.8776 1.6001 2.7122 36 1 8.4031 0.9439 1.9604 37 1 8.5830 -1.2800 5.9248 38 1 10.0583 -3.3230 5.5432 39 1 11.0945 -4.5188 3.1547 40 1 13.2152 -2.9322 4.3443 41 1 13.0907 -1.8236 1.7063 42 1 13.3030 -4.1808 1.1416 43 1 6.7057 -0.0591 3.3140 44 1 6.9079 -0.1548 5.0802 45 1 6.6404 2.2689 5.2893 46 1 5.2675 1.6270 4.3526 47 1 4.6642 0.1526 1.5584 48 1 3.5274 1.4124 2.2075 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_80748_13206342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:38 Heat of formation + Delta-G solvation = -94.043638 kcal Electronic energy + Delta-G solvation = -34587.392178 eV Core-core repulsion = 29864.888577 eV Total energy + Delta-G solvation = -4722.503601 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.105 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.93892 -40.86280 -39.66495 -39.12066 -38.29385 -37.58681 -37.38197 -37.07710 -35.63989 -32.62977 -30.94335 -29.94379 -28.24988 -27.77230 -27.29760 -25.73322 -25.26892 -23.72904 -23.38971 -22.10060 -20.92305 -20.51570 -20.13310 -19.59518 -19.06734 -18.40254 -18.09222 -17.80406 -17.57278 -17.29406 -16.85773 -16.81556 -16.65793 -16.39432 -16.27444 -16.02203 -15.84113 -15.68294 -15.30435 -14.79479 -14.54164 -14.44622 -14.11389 -14.00499 -13.94227 -13.78997 -13.71476 -13.53883 -13.51054 -13.43620 -13.18644 -13.15809 -13.14584 -12.85421 -12.80053 -12.65427 -12.43528 -12.31718 -12.26210 -12.07998 -11.86198 -11.73943 -11.60038 -11.38578 -11.01620 -10.70300 -10.24418 -9.54132 -8.91729 -5.13220 -0.98483 -0.11952 0.28047 0.74257 1.02368 1.18143 1.33696 1.51535 1.58784 1.69309 1.86056 2.34952 2.42109 2.63817 2.81453 3.02043 3.13972 3.25882 3.27847 3.38520 3.63317 3.70934 3.73574 3.78374 3.81676 3.92895 3.98785 4.03923 4.10953 4.16758 4.18872 4.21694 4.23832 4.33591 4.34828 4.35940 4.45759 4.46415 4.54857 4.55035 4.62990 4.69343 4.76010 4.77077 4.91755 5.13243 5.20091 5.28583 5.35490 5.56072 5.71887 6.29624 6.61894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.466 3.534 4 O -0.498 6.498 5 C -0.096 4.096 6 H 0.136 0.864 7 C -0.091 4.091 8 C -0.629 4.629 9 H 0.159 0.841 10 S 2.613 3.387 11 O -0.941 6.941 12 O -0.944 6.944 13 N -1.001 6.001 14 C 0.127 3.873 15 C 0.027 3.973 16 N -0.446 5.446 17 C 0.023 3.977 18 C -0.174 4.174 19 C -0.078 4.078 20 C -0.233 4.233 21 C -0.028 4.028 22 O -0.525 6.525 23 Si 0.647 3.353 24 S 0.079 5.921 25 C 0.041 3.959 26 C 0.125 3.875 27 C -0.092 4.092 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.378 0.622 41 H -0.241 1.241 42 H -0.237 1.237 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 -4.812 -2.510 5.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.154 0.846 7 C -0.129 4.129 8 C -0.738 4.738 9 H 0.177 0.823 10 S 2.706 3.294 11 O -0.931 6.931 12 O -0.934 6.934 13 N -0.839 5.839 14 C 0.002 3.998 15 C -0.103 4.103 16 N -0.162 5.162 17 C -0.191 4.191 18 C -0.206 4.206 19 C -0.109 4.109 20 C -0.350 4.350 21 C -0.141 4.141 22 O -0.332 6.332 23 Si 0.546 3.454 24 S 0.339 5.661 25 C -0.087 4.087 26 C -0.001 4.001 27 C -0.131 4.131 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.143 0.857 40 H 0.226 0.774 41 H -0.165 1.165 42 H -0.160 1.160 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.244 -3.134 -3.737 4.884 hybrid contribution -0.032 -1.251 1.325 1.823 sum 0.212 -4.386 -2.412 5.010 Atomic orbital electron populations 1.23360 0.75671 1.04136 1.02901 1.86503 1.23937 1.33026 1.83761 1.23481 0.91538 0.81656 0.72484 1.90716 1.66852 1.36393 1.44566 1.22421 0.87831 1.00178 1.01118 0.84578 1.22642 0.94307 0.95801 1.00190 1.32108 1.07375 1.15935 1.18344 0.82332 1.05157 0.73578 0.75335 0.75323 1.93631 1.52568 1.85417 1.61513 1.93624 1.74456 1.44248 1.81085 1.57902 1.17955 1.64894 1.43113 1.21521 0.79268 0.95436 1.03584 1.22826 1.02472 0.95161 0.89800 1.58849 1.07573 1.13642 1.36185 1.23672 1.03550 0.93921 0.97963 1.19984 1.05448 0.94816 1.00370 1.19918 0.95265 0.98815 0.96890 1.24473 1.08815 1.00200 1.01521 1.24300 0.89318 0.99198 1.01239 1.86614 1.45812 1.40237 1.60537 0.95339 0.88351 0.81880 0.79862 1.84331 1.44448 1.15152 1.22216 1.22806 0.84927 0.97815 1.03163 1.21593 0.99835 0.88843 0.89833 1.22633 0.95615 0.98518 0.96295 0.87721 0.91565 0.91634 0.87471 0.87806 0.89335 0.87935 0.88320 0.92303 0.83969 0.83956 0.85723 0.77441 1.16521 1.16024 0.92640 0.88217 0.89454 0.88035 0.87997 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.13 10.57 -39.25 -0.41 -0.55 16 3 C 0.47 0.45 7.49 36.01 0.27 0.72 16 4 O -0.50 -2.09 15.65 -18.75 -0.29 -2.38 16 5 C -0.10 0.23 4.26 -90.96 -0.39 -0.16 16 6 H 0.14 -0.65 8.14 -51.93 -0.42 -1.08 16 7 C -0.09 0.17 6.99 -25.92 -0.18 -0.01 16 8 C -0.63 2.21 4.52 -25.92 -0.12 2.10 16 9 H 0.16 -1.01 8.14 -51.93 -0.42 -1.43 16 10 S 2.61 -0.47 5.39 -107.50 -0.58 -1.05 16 11 O -0.94 -2.75 15.96 -57.54 -0.92 -3.67 16 12 O -0.94 -2.97 16.80 -57.54 -0.97 -3.93 16 13 N -1.00 2.06 3.26 -113.23 -0.37 1.70 16 14 C 0.13 -0.34 6.46 -3.60 -0.02 -0.36 16 15 C 0.03 -0.08 4.70 -3.70 -0.02 -0.10 16 16 N -0.45 0.86 4.71 -171.98 -0.81 0.05 16 17 C 0.02 -0.02 6.03 -15.46 -0.09 -0.12 16 18 C -0.17 0.13 9.48 -40.91 -0.39 -0.26 16 19 C -0.08 0.03 10.01 -41.20 -0.41 -0.38 16 20 C -0.23 0.14 5.71 -36.06 -0.21 -0.07 16 21 C -0.03 0.02 2.96 36.01 0.11 0.13 16 22 O -0.53 -0.34 12.86 -35.23 -0.45 -0.80 16 23 Si 0.65 -0.77 30.96 -169.99 -5.26 -6.03 16 24 S 0.08 -0.10 18.68 -107.50 -2.01 -2.11 16 25 C 0.04 -0.14 5.48 -3.70 -0.02 -0.16 16 26 C 0.12 -0.36 6.47 -3.60 -0.02 -0.38 16 27 C -0.09 0.33 7.19 -25.92 -0.19 0.15 16 28 H 0.10 -0.38 8.14 -51.93 -0.42 -0.80 16 29 H 0.07 -0.07 8.13 -51.93 -0.42 -0.49 16 30 H 0.06 -0.07 8.13 -51.93 -0.42 -0.49 16 31 H 0.11 -0.02 7.40 -51.93 -0.38 -0.41 16 32 H 0.10 -0.36 8.14 -51.93 -0.42 -0.79 16 33 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 34 H 0.10 -0.37 7.20 -51.93 -0.37 -0.74 16 35 H 0.10 -0.31 7.43 -51.92 -0.39 -0.70 16 36 H 0.06 -0.25 8.10 -51.93 -0.42 -0.67 16 37 H 0.14 -0.25 7.58 -52.49 -0.40 -0.65 16 38 H 0.14 -0.12 8.06 -52.49 -0.42 -0.55 16 39 H 0.13 -0.21 7.96 -51.93 -0.41 -0.63 16 40 H 0.38 -0.74 8.70 45.56 0.40 -0.34 16 41 H -0.24 -0.18 7.11 56.52 0.40 0.22 16 42 H -0.24 -0.39 7.11 56.52 0.40 0.01 16 43 H 0.06 -0.25 8.14 -51.93 -0.42 -0.67 16 44 H 0.10 -0.41 7.14 -51.93 -0.37 -0.78 16 45 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 46 H 0.10 -0.38 7.19 -51.93 -0.37 -0.75 16 47 H 0.10 -0.60 8.14 -51.93 -0.42 -1.03 16 48 H 0.11 -0.28 7.38 -51.93 -0.38 -0.66 16 LS Contribution 412.90 15.07 6.22 6.22 Total: 0.00 -11.68 412.90 -13.42 -25.10 By element: Atomic # 1 Polarization: -7.71 SS G_CDS: -6.95 Total: -14.66 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.61 Total: 2.12 kcal Atomic # 7 Polarization: 2.92 SS G_CDS: -1.18 Total: 1.74 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -3.05 Total: -11.33 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.26 Total: -6.03 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -2.59 Total: -3.16 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -11.68 -13.42 -25.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80748_13206342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.946 kcal (2) G-P(sol) polarization free energy of solvation -11.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds