Wall clock time and date at job start Mon Mar 8 2021 11:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99588 * 2 1 4 4 O 1.20829 * 120.00489 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00033 * 180.02562 * 3 2 1 6 6 H 1.09006 * 112.84861 * 48.80405 * 5 3 2 7 7 C 1.53775 * 113.61839 * 180.02562 * 5 3 2 8 8 C 1.53781 * 87.08368 * 140.06443 * 7 5 3 9 9 H 1.09001 * 113.61105 * 89.20047 * 8 7 5 10 10 S 1.81398 * 113.61423 * 220.01745 * 8 7 5 11 11 O 1.42103 * 110.54275 * 68.37794 * 10 8 7 12 12 O 1.42100 * 110.54548 * 291.62723 * 10 8 7 13 13 N 1.65598 * 104.44977 * 179.97438 * 10 8 7 14 14 C 1.47080 * 120.88115 * 90.00199 * 13 10 8 15 15 C 1.53243 * 108.51996 * 231.20769 * 14 13 10 16 16 N 1.46895 * 109.34185 * 306.17014 * 15 14 13 17 17 C 1.39619 * 111.00267 * 187.25632 * 16 15 14 18 18 C 1.34096 * 125.23813 * 179.97438 * 17 16 15 19 19 C 1.38590 * 114.71762 * 179.80497 * 18 17 16 20 20 C 1.33228 * 114.98377 * 0.43349 * 19 18 17 21 21 C 1.50699 * 125.12820 * 179.85680 * 20 19 18 22 22 O 1.42892 * 109.47249 * 299.72070 * 21 20 19 23 23 Si 1.86298 * 109.47032 * 179.71455 * 21 20 19 24 24 S 1.75860 * 109.74369 * 359.59049 * 20 19 18 25 25 C 1.46901 * 111.27239 * 63.10161 * 16 15 14 26 26 C 1.47080 * 120.88204 * 270.02433 * 13 10 8 27 27 C 1.53777 * 87.08218 * 334.56765 * 8 7 5 28 28 H 1.09001 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47407 * 299.99334 * 1 2 3 30 30 H 1.08999 * 109.47426 * 60.00007 * 1 2 3 31 31 H 1.08998 * 113.61578 * 25.51210 * 7 5 3 32 32 H 1.09001 * 113.68945 * 254.62892 * 7 5 3 33 33 H 1.09002 * 109.63092 * 111.49729 * 14 13 10 34 34 H 1.09003 * 109.78609 * 351.00895 * 14 13 10 35 35 H 1.09007 * 109.49011 * 186.20434 * 15 14 13 36 36 H 1.09003 * 109.49325 * 66.13483 * 15 14 13 37 37 H 1.07993 * 122.64230 * 0.04045 * 18 17 16 38 38 H 1.07993 * 122.50600 * 180.27719 * 19 18 17 39 39 H 1.09004 * 109.46453 * 59.72138 * 21 20 19 40 40 H 0.96703 * 114.00176 * 299.99748 * 22 21 20 41 41 H 1.48506 * 109.99834 * 58.68765 * 23 21 20 42 42 H 1.48502 * 110.00011 * 180.02562 * 23 21 20 43 43 H 1.08997 * 109.48745 * 56.85568 * 25 16 15 44 44 H 1.08991 * 109.49235 * 176.93591 * 25 16 15 45 45 H 1.08997 * 109.62871 * 248.50034 * 26 13 10 46 46 H 1.09001 * 109.62997 * 8.88887 * 26 13 10 47 47 H 1.08994 * 113.61829 * 139.97661 * 27 8 7 48 48 H 1.09000 * 113.61663 * 270.88364 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 4.0233 0.6366 -0.7568 7 6 4.1076 2.7143 0.0001 8 6 5.1827 2.2258 0.9852 9 1 6.0822 1.8491 0.4983 10 16 5.5430 3.4084 2.3128 11 8 4.4328 3.5242 3.1922 12 8 6.1880 4.5622 1.7913 13 7 6.7088 2.6645 3.2236 14 6 8.1362 2.8547 2.9243 15 6 8.8003 1.4772 2.8241 16 7 8.5184 0.7112 4.0454 17 6 9.2396 -0.4842 4.0641 18 6 9.1973 -1.3981 5.0444 19 6 10.0000 -2.5086 4.8365 20 6 10.6967 -2.4946 3.7010 21 6 11.6397 -3.5796 3.2488 22 8 12.6871 -3.7310 4.2090 23 14 12.3716 -3.1184 1.5988 24 16 10.3442 -1.0225 2.8058 25 6 7.0789 0.4600 4.1967 26 6 6.3444 1.7958 4.3531 27 6 4.1936 1.1220 1.3952 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 3.4179 3.4400 0.4310 32 1 4.5090 3.0317 -0.9623 33 1 8.6045 3.4296 3.7233 34 1 8.2475 3.3845 1.9782 35 1 9.8776 1.6001 2.7122 36 1 8.4031 0.9439 1.9604 37 1 8.5830 -1.2800 5.9248 38 1 10.0583 -3.3230 5.5432 39 1 11.0945 -4.5188 3.1547 40 1 13.2152 -2.9322 4.3443 41 1 13.0907 -1.8236 1.7063 42 1 13.3030 -4.1808 1.1416 43 1 6.7057 -0.0591 3.3140 44 1 6.9079 -0.1548 5.0802 45 1 6.6404 2.2689 5.2893 46 1 5.2675 1.6270 4.3526 47 1 4.6642 0.1526 1.5584 48 1 3.5274 1.4124 2.2075 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80748_13206342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:32:36 Heat of formation + Delta-G solvation = -97.632216 kcal Electronic energy + Delta-G solvation = -34587.547790 eV Core-core repulsion = 29864.888577 eV Total energy + Delta-G solvation = -4722.659213 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.105 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.91344 -40.65389 -39.52416 -39.01302 -38.36421 -37.50410 -37.45055 -37.15135 -35.48292 -32.37486 -30.81938 -29.84388 -28.08419 -27.62616 -27.05198 -25.57001 -25.05226 -23.60287 -23.31659 -21.90820 -20.75066 -20.37637 -20.03039 -19.49213 -19.01204 -18.34747 -18.05446 -17.71315 -17.53792 -17.18920 -16.79402 -16.63616 -16.47489 -16.24625 -16.14221 -15.83920 -15.68064 -15.57361 -15.11686 -14.73121 -14.49023 -14.40143 -13.93460 -13.88673 -13.78228 -13.69363 -13.63156 -13.47150 -13.40212 -13.35326 -13.20249 -13.08036 -13.00098 -12.74274 -12.69049 -12.39135 -12.38256 -12.21899 -12.10291 -11.87366 -11.81480 -11.61470 -11.50218 -11.33826 -10.86204 -10.61538 -10.05240 -9.40143 -8.73967 -5.05214 -0.92225 0.00785 0.40805 0.85525 1.01333 1.27213 1.45126 1.57304 1.68799 1.81010 1.90708 2.56677 2.59388 2.77513 2.99435 3.23329 3.25627 3.39045 3.49086 3.65541 3.83507 3.87647 3.92991 4.02764 4.05429 4.20761 4.25857 4.27767 4.31238 4.35132 4.38799 4.45974 4.49047 4.54818 4.60330 4.63480 4.66253 4.69917 4.73062 4.75792 4.86172 4.91038 5.00002 5.02076 5.07581 5.27775 5.30876 5.40441 5.51592 5.77245 5.91100 6.43764 6.60744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.462 3.538 4 O -0.542 6.542 5 C -0.091 4.091 6 H 0.172 0.828 7 C -0.108 4.108 8 C -0.597 4.597 9 H 0.201 0.799 10 S 2.609 3.391 11 O -0.984 6.984 12 O -0.986 6.986 13 N -0.998 5.998 14 C 0.125 3.875 15 C 0.027 3.973 16 N -0.457 5.457 17 C 0.025 3.975 18 C -0.186 4.186 19 C -0.085 4.085 20 C -0.242 4.242 21 C -0.033 4.033 22 O -0.544 6.544 23 Si 0.717 3.283 24 S 0.091 5.909 25 C 0.043 3.957 26 C 0.122 3.878 27 C -0.092 4.092 28 H 0.131 0.869 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.386 0.614 41 H -0.266 1.266 42 H -0.280 1.280 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.139 0.861 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -6.510 -3.576 7.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.306 3.694 4 O -0.432 6.432 5 C -0.110 4.110 6 H 0.189 0.811 7 C -0.147 4.147 8 C -0.709 4.709 9 H 0.218 0.782 10 S 2.707 3.293 11 O -0.974 6.974 12 O -0.977 6.977 13 N -0.836 5.836 14 C 0.000 4.000 15 C -0.102 4.102 16 N -0.174 5.174 17 C -0.189 4.189 18 C -0.218 4.218 19 C -0.116 4.116 20 C -0.359 4.359 21 C -0.145 4.145 22 O -0.353 6.353 23 Si 0.620 3.380 24 S 0.351 5.649 25 C -0.084 4.084 26 C -0.003 4.003 27 C -0.130 4.130 28 H 0.149 0.851 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.236 0.764 41 H -0.192 1.192 42 H -0.206 1.206 43 H 0.093 0.907 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.157 0.843 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.652 -4.801 -4.758 6.790 hybrid contribution -0.180 -0.715 1.662 1.818 sum 0.472 -5.515 -3.096 6.343 Atomic orbital electron populations 1.23544 0.75134 1.05718 1.02369 1.86508 1.24631 1.32753 1.83385 1.24253 0.92946 0.81125 0.71066 1.90700 1.68071 1.37720 1.46671 1.22642 0.85425 1.00171 1.02802 0.81067 1.22775 0.94615 0.96026 1.01322 1.31927 1.08718 1.14267 1.15950 0.78155 1.04949 0.72852 0.75699 0.75788 1.93574 1.54028 1.86400 1.63385 1.93565 1.75070 1.47294 1.81728 1.57674 1.17768 1.64798 1.43326 1.21588 0.78726 0.95971 1.03713 1.22874 1.02555 0.94688 0.90097 1.58825 1.08413 1.13298 1.36877 1.23768 1.03388 0.93901 0.97881 1.20066 1.05916 0.94971 1.00856 1.20003 0.95470 0.99059 0.97032 1.24496 1.08980 1.00607 1.01862 1.24455 0.89213 0.99794 1.01036 1.86584 1.46389 1.41230 1.61065 0.94556 0.86587 0.78457 0.78360 1.84220 1.44351 1.14506 1.21796 1.22846 0.83862 0.97299 1.04411 1.21669 1.00467 0.89085 0.89090 1.22757 0.95127 0.99999 0.95137 0.85081 0.92263 0.92104 0.90144 0.85955 0.90456 0.87013 0.88300 0.90176 0.83436 0.84044 0.84899 0.76429 1.19193 1.20559 0.90658 0.87639 0.90541 0.87304 0.84313 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.05 10.57 -51.40 -0.54 -0.59 16 3 C 0.46 0.85 7.49 71.24 0.53 1.38 16 4 O -0.54 -5.37 15.65 21.95 0.34 -5.02 16 5 C -0.09 0.62 4.26 -11.01 -0.05 0.57 16 6 H 0.17 -2.34 8.14 -2.38 -0.02 -2.36 16 7 C -0.11 0.50 6.99 31.12 0.22 0.72 16 8 C -0.60 5.38 4.52 31.12 0.14 5.52 16 9 H 0.20 -3.46 8.14 -2.39 -0.02 -3.48 16 10 S 2.61 0.17 5.39 -56.49 -0.30 -0.14 16 11 O -0.98 -7.47 15.96 -127.65 -2.04 -9.51 16 12 O -0.99 -7.34 16.80 -127.65 -2.14 -9.48 16 13 N -1.00 4.48 3.26 -512.15 -1.67 2.81 16 14 C 0.13 -0.74 6.46 86.35 0.56 -0.18 16 15 C 0.03 -0.21 4.70 86.39 0.41 0.19 16 16 N -0.46 2.40 4.71 -698.01 -3.29 -0.89 16 17 C 0.03 -0.09 6.03 82.51 0.50 0.41 16 18 C -0.19 0.45 9.48 21.41 0.20 0.65 16 19 C -0.08 0.12 10.01 21.22 0.21 0.33 16 20 C -0.24 0.49 5.71 24.55 0.14 0.63 16 21 C -0.03 0.07 2.96 71.24 0.21 0.28 16 22 O -0.54 -0.71 12.86 -148.98 -1.92 -2.63 16 23 Si 0.72 -1.90 30.96 68.60 2.12 0.22 16 24 S 0.09 -0.37 18.68 -56.49 -1.06 -1.42 16 25 C 0.04 -0.38 5.48 86.38 0.47 0.10 16 26 C 0.12 -0.75 6.47 86.35 0.56 -0.20 16 27 C -0.09 0.87 7.19 31.12 0.22 1.09 16 28 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 29 H 0.06 -0.06 8.13 -2.38 -0.02 -0.08 16 30 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 31 H 0.08 0.10 7.40 -2.39 -0.02 0.09 16 32 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 33 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.11 -0.87 7.20 -2.39 -0.02 -0.89 16 35 H 0.10 -0.76 7.43 -2.38 -0.02 -0.78 16 36 H 0.08 -0.96 8.10 -2.39 -0.02 -0.98 16 37 H 0.15 -0.61 7.58 -2.91 -0.02 -0.64 16 38 H 0.14 -0.26 8.06 -2.91 -0.02 -0.29 16 39 H 0.13 -0.55 7.96 -2.38 -0.02 -0.57 16 40 H 0.39 -1.44 8.70 -74.06 -0.64 -2.09 16 41 H -0.27 -0.35 7.11 99.48 0.71 0.36 16 42 H -0.28 -1.18 7.11 99.48 0.71 -0.47 16 43 H 0.08 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.11 -1.01 7.14 -2.39 -0.02 -1.03 16 45 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.11 -0.83 7.19 -2.39 -0.02 -0.85 16 47 H 0.14 -2.27 8.14 -2.39 -0.02 -2.29 16 48 H 0.09 -0.51 7.38 -2.39 -0.02 -0.53 16 Total: 0.00 -30.18 412.90 -4.58 -34.76 By element: Atomic # 1 Polarization: -21.12 SS G_CDS: 0.39 Total: -20.73 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 5.52 Total: 12.63 kcal Atomic # 7 Polarization: 6.88 SS G_CDS: -4.96 Total: 1.92 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -6.30 Total: -27.23 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: 2.12 Total: 0.22 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -1.36 Total: -1.56 kcal Total: -30.18 -4.58 -34.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80748_13206342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.872 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds