Wall clock time and date at job start Mon Mar 8 2021 13:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47012 * 2 1 4 4 C 1.86303 * 109.47165 * 239.99614 * 2 1 3 5 5 C 1.86301 * 109.46996 * 119.99859 * 2 1 3 6 6 C 1.53006 * 109.47122 * 59.99736 * 5 2 1 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 2 8 8 S 1.81399 * 109.47147 * 180.02562 * 7 6 5 9 9 O 1.42104 * 110.53977 * 291.62707 * 8 7 6 10 10 O 1.42095 * 110.54514 * 68.37328 * 8 7 6 11 11 N 1.65598 * 104.45041 * 180.02562 * 8 7 6 12 12 C 1.47084 * 120.87645 * 269.72140 * 11 8 7 13 13 C 1.53693 * 108.27477 * 128.75641 * 12 11 8 14 14 N 1.46895 * 109.26154 * 54.07940 * 13 12 11 15 15 C 1.39615 * 111.00230 * 172.60685 * 14 13 12 16 16 C 1.34090 * 125.23710 * 304.02114 * 15 14 13 17 17 C 1.38589 * 114.71668 * 179.79714 * 16 15 14 18 18 C 1.33226 * 114.98426 * 0.49731 * 17 16 15 19 19 C 1.50700 * 125.12482 * 179.73374 * 18 17 16 20 20 O 1.42896 * 109.47618 * 299.97595 * 19 18 17 21 21 Si 1.86306 * 109.46947 * 179.97438 * 19 18 17 22 22 H 1.48502 * 109.46846 * 59.99780 * 21 19 18 23 23 H 1.48491 * 109.47214 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46990 * 300.00349 * 21 19 18 25 25 S 1.75858 * 109.74475 * 359.73597 * 18 17 16 26 26 C 1.46900 * 111.26753 * 296.75865 * 14 13 12 27 27 C 1.47078 * 120.88431 * 89.99967 * 11 8 7 28 28 H 1.09001 * 109.47312 * 300.00374 * 1 2 3 29 29 H 1.09004 * 109.46722 * 59.99787 * 1 2 3 30 30 H 1.09002 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46909 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47202 * 299.99426 * 3 2 1 33 33 H 1.09001 * 109.47383 * 60.00230 * 3 2 1 34 34 H 1.08992 * 109.47172 * 300.00252 * 4 2 1 35 35 H 1.09004 * 109.46812 * 60.00653 * 4 2 1 36 36 H 1.08996 * 109.47221 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.46900 * 300.00019 * 5 2 1 38 38 H 1.08993 * 109.47131 * 179.97438 * 5 2 1 39 39 H 1.09001 * 109.46801 * 300.00192 * 6 5 2 40 40 H 1.09001 * 109.46998 * 59.99788 * 6 5 2 41 41 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 42 42 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 43 43 H 1.08997 * 109.62553 * 248.52196 * 12 11 8 44 44 H 1.08999 * 109.63037 * 9.10206 * 12 11 8 45 45 H 1.09004 * 109.64959 * 294.07602 * 13 12 11 46 46 H 1.09000 * 109.44252 * 173.96214 * 13 12 11 47 47 H 1.07997 * 122.64312 * 0.02562 * 16 15 14 48 48 H 1.08009 * 122.50674 * 180.21726 * 17 16 15 49 49 H 1.08997 * 109.47321 * 59.98203 * 19 18 17 50 50 H 0.96705 * 114.00090 * 300.00662 * 20 19 18 51 51 H 1.08995 * 109.49254 * 303.14017 * 26 14 13 52 52 H 1.08998 * 109.49338 * 183.06129 * 26 14 13 53 53 H 1.08997 * 109.62469 * 350.89369 * 27 11 8 54 54 H 1.08995 * 109.62794 * 111.28365 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 6 1.9739 -2.3207 1.5212 7 6 2.4844 -3.0421 2.7702 8 16 1.8803 -4.7526 2.7699 9 8 0.4729 -4.7843 2.9639 10 8 2.4928 -5.4976 1.7264 11 7 2.4984 -5.4094 4.1587 12 6 3.8084 -6.0782 4.1594 13 6 4.6538 -5.4809 5.2955 14 7 3.9074 -5.5769 6.5570 15 6 4.7036 -5.1987 7.6396 16 6 5.8881 -5.7418 7.9559 17 6 6.4956 -5.1957 9.0754 18 6 5.8068 -4.2236 9.6716 19 6 6.2489 -3.4781 10.9044 20 8 6.4172 -4.3994 11.9836 21 14 4.9585 -2.2145 11.3621 22 1 3.6693 -2.8997 11.6335 23 1 5.3944 -1.4795 12.5764 24 1 4.7837 -1.2570 10.2405 25 16 4.3039 -3.9416 8.8030 26 6 2.6733 -4.7815 6.5078 27 6 1.7493 -5.3449 5.4228 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.5740 1.7564 0.0005 32 1 2.1208 2.2702 -0.8900 33 1 2.1207 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5211 35 1 2.1208 -0.3644 -2.4111 36 1 3.5740 -0.8779 -1.5213 37 1 2.1206 -0.3643 2.4111 38 1 3.5739 -0.8786 1.5210 39 1 0.8839 -2.3206 1.5212 40 1 2.3372 -2.8346 0.6312 41 1 3.5744 -3.0421 2.7697 42 1 2.1214 -2.5284 3.6603 43 1 3.6735 -7.1474 4.3224 44 1 4.3057 -5.9105 3.2040 45 1 4.8706 -4.4346 5.0799 46 1 5.5882 -6.0354 5.3825 47 1 6.3353 -6.5393 7.3812 48 1 7.4536 -5.5361 9.4401 49 1 7.1951 -2.9751 10.7051 50 1 5.6133 -4.8840 12.2161 51 1 2.9177 -3.7451 6.2754 52 1 2.1710 -4.8294 7.4739 53 1 0.8847 -4.6921 5.3030 54 1 1.4175 -6.3445 5.7031 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80748_14927650.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:48:40 Heat of formation + Delta-G solvation = -103.655476 kcal Electronic energy + Delta-G solvation = -32485.990769 eV Core-core repulsion = 28221.142692 eV Total energy + Delta-G solvation = -4264.848077 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 406.138 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.70175 -38.98913 -38.33355 -37.42650 -37.10547 -35.78910 -35.49032 -32.41372 -30.83596 -29.60484 -28.37116 -28.32462 -28.20072 -28.01610 -25.61473 -25.10836 -23.63038 -22.86957 -21.77825 -20.42856 -20.00137 -19.23352 -18.28396 -17.77848 -17.54518 -17.37636 -16.63680 -16.33708 -16.22887 -16.16644 -15.95968 -15.73358 -15.53664 -15.16042 -14.86131 -14.70823 -14.16586 -14.05487 -14.02072 -13.96897 -13.75536 -13.66114 -13.56927 -13.49098 -13.44745 -13.36502 -13.26200 -13.16904 -13.09258 -13.05242 -12.99981 -12.96850 -12.74618 -12.46691 -12.38179 -12.34735 -12.16377 -12.08013 -11.80971 -11.76259 -11.51708 -10.92117 -10.72777 -10.70132 -10.51316 -10.45471 -10.04250 -9.49068 -8.80696 -0.85943 -0.04634 0.31613 0.77924 1.13830 1.37049 1.47694 1.49383 1.77306 1.87020 1.92035 1.99421 2.00167 2.50549 2.70372 2.82000 3.01984 3.38473 3.51146 3.73458 3.74462 3.84314 3.85822 3.96077 4.01632 4.14617 4.18042 4.26873 4.40705 4.43697 4.50054 4.56477 4.60908 4.67835 4.69199 4.79539 4.79722 4.80211 4.81972 4.84774 4.85248 4.85569 4.86232 4.92055 4.94882 5.03189 5.08762 5.24166 5.36939 5.44003 5.46904 5.58076 5.64798 5.65088 5.69666 5.84132 6.64566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.474 4.474 2 Si 1.068 2.932 3 C -0.464 4.464 4 C -0.473 4.473 5 C -0.407 4.407 6 C -0.123 4.123 7 C -0.604 4.604 8 S 2.600 3.400 9 O -0.988 6.988 10 O -0.987 6.987 11 N -1.005 6.005 12 C 0.123 3.877 13 C 0.042 3.958 14 N -0.454 5.454 15 C 0.026 3.974 16 C -0.182 4.182 17 C -0.079 4.079 18 C -0.241 4.241 19 C -0.030 4.030 20 O -0.548 6.548 21 Si 0.918 3.082 22 H -0.242 1.242 23 H -0.245 1.245 24 H -0.244 1.244 25 S 0.050 5.950 26 C 0.027 3.973 27 C 0.127 3.873 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.153 0.847 48 H 0.151 0.849 49 H 0.134 0.866 50 H 0.389 0.611 51 H 0.069 0.931 52 H 0.099 0.901 53 H 0.110 0.890 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 3.914 1.291 4.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.260 2.740 3 C -0.570 4.570 4 C -0.579 4.579 5 C -0.493 4.493 6 C -0.162 4.162 7 C -0.737 4.737 8 S 2.699 3.301 9 O -0.978 6.978 10 O -0.977 6.977 11 N -0.842 5.842 12 C -0.003 4.003 13 C -0.086 4.086 14 N -0.171 5.171 15 C -0.189 4.189 16 C -0.215 4.215 17 C -0.110 4.110 18 C -0.358 4.358 19 C -0.143 4.143 20 O -0.355 6.355 21 Si 0.740 3.260 22 H -0.165 1.165 23 H -0.168 1.168 24 H -0.167 1.167 25 S 0.310 5.690 26 C -0.102 4.102 27 C 0.002 3.998 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.099 0.901 44 H 0.129 0.871 45 H 0.083 0.917 46 H 0.126 0.874 47 H 0.170 0.830 48 H 0.168 0.832 49 H 0.151 0.849 50 H 0.238 0.762 51 H 0.087 0.913 52 H 0.117 0.883 53 H 0.128 0.872 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.766 4.708 1.055 4.885 hybrid contribution 1.257 -0.488 -0.127 1.355 sum 2.024 4.219 0.928 4.771 Atomic orbital electron populations 1.26434 1.22727 1.04327 1.04442 0.78307 0.65036 0.65373 0.65247 1.26283 1.06452 1.19935 1.04339 1.26426 1.06622 1.08326 1.16528 1.26184 1.06912 0.99643 1.16608 1.21209 1.02035 0.97817 0.95128 1.30573 1.14259 1.20211 1.08626 1.05238 0.73789 0.78404 0.72637 1.93562 1.31257 1.87855 1.85174 1.93562 1.78318 1.69950 1.55871 1.57777 1.30239 1.71420 1.24785 1.21763 0.81293 0.98007 0.99217 1.22942 0.97164 1.01977 0.86489 1.58880 1.05197 1.51135 1.01920 1.23676 0.97688 0.98314 0.99188 1.20137 0.95970 1.04602 1.00749 1.20048 1.01162 0.95443 0.94343 1.24611 0.98233 1.07395 1.05581 1.24261 1.09447 0.97067 0.83555 1.86494 1.40415 1.58035 1.50582 0.85940 0.78289 0.79325 0.82423 1.16548 1.16781 1.16711 1.84432 1.22781 1.36291 1.25466 1.22849 0.90194 0.95934 1.01233 1.21550 0.93397 1.03595 0.81278 0.91041 0.91585 0.91472 0.91103 0.91667 0.91136 0.91459 0.91591 0.90996 0.89101 0.89041 0.90006 0.89950 0.82723 0.82842 0.90081 0.87126 0.91736 0.87363 0.82981 0.83154 0.84891 0.76192 0.91309 0.88283 0.87225 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.54 8.65 113.37 0.98 2.52 16 2 Si 1.07 -7.38 12.19 68.60 0.84 -6.54 16 3 C -0.46 2.10 8.65 113.37 0.98 3.08 16 4 C -0.47 1.57 8.65 113.37 0.98 2.55 16 5 C -0.41 3.11 4.45 71.98 0.32 3.43 16 6 C -0.12 0.61 4.59 30.60 0.14 0.75 16 7 C -0.60 4.33 6.18 71.98 0.44 4.78 16 8 S 2.60 1.39 5.42 -56.49 -0.31 1.08 16 9 O -0.99 -7.42 16.79 -127.65 -2.14 -9.56 16 10 O -0.99 -7.19 16.78 -127.65 -2.14 -9.33 16 11 N -1.00 2.69 3.25 -511.35 -1.66 1.03 16 12 C 0.12 -0.55 6.50 86.50 0.56 0.01 16 13 C 0.04 -0.25 5.49 86.54 0.48 0.23 16 14 N -0.45 1.19 4.71 -697.14 -3.28 -2.09 16 15 C 0.03 -0.02 6.03 82.51 0.50 0.48 16 16 C -0.18 0.19 9.49 21.41 0.20 0.39 16 17 C -0.08 0.05 10.01 21.22 0.21 0.26 16 18 C -0.24 0.12 5.71 24.55 0.14 0.26 16 19 C -0.03 0.06 2.96 71.24 0.21 0.27 16 20 O -0.55 0.26 12.86 -148.98 -1.92 -1.66 16 21 Si 0.92 -1.16 26.24 68.60 1.80 0.64 16 22 H -0.24 0.09 7.11 99.48 0.71 0.80 16 23 H -0.24 -0.25 7.11 99.48 0.71 0.45 16 24 H -0.24 0.06 7.11 99.48 0.71 0.77 16 25 S 0.05 -0.03 18.68 -56.49 -1.06 -1.08 16 26 C 0.03 -0.12 4.70 86.38 0.41 0.28 16 27 C 0.13 -0.47 6.46 86.35 0.56 0.09 16 28 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 29 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 30 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 31 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 32 H 0.06 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 34 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 35 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 36 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 37 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 38 H 0.09 -0.85 7.96 -2.39 -0.02 -0.86 16 39 H 0.08 -0.42 7.79 -2.39 -0.02 -0.44 16 40 H 0.08 -0.43 7.79 -2.39 -0.02 -0.45 16 41 H 0.15 -1.77 8.14 -2.39 -0.02 -1.79 16 42 H 0.15 -1.73 8.14 -2.39 -0.02 -1.75 16 43 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.11 -0.69 7.19 -2.39 -0.02 -0.71 16 45 H 0.06 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.11 -0.82 7.16 -2.39 -0.02 -0.84 16 47 H 0.15 -0.52 7.59 -2.91 -0.02 -0.54 16 48 H 0.15 -0.33 8.06 -2.91 -0.02 -0.36 16 49 H 0.13 -0.53 7.96 -2.39 -0.02 -0.55 16 50 H 0.39 -2.40 8.70 -74.05 -0.64 -3.04 16 51 H 0.07 -0.47 8.10 -2.39 -0.02 -0.49 16 52 H 0.10 -0.46 7.43 -2.39 -0.02 -0.48 16 53 H 0.11 -0.59 7.19 -2.39 -0.02 -0.61 16 54 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: 0.00 -21.36 449.70 -1.78 -23.14 By element: Atomic # 1 Polarization: -15.98 SS G_CDS: 0.98 Total: -15.00 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 7.11 Total: 19.38 kcal Atomic # 7 Polarization: 3.88 SS G_CDS: -4.95 Total: -1.07 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -6.20 Total: -20.56 kcal Atomic # 14 Polarization: -8.54 SS G_CDS: 2.64 Total: -5.90 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.36 Total: 0.00 kcal Total: -21.36 -1.78 -23.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80748_14927650.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.514 kcal (2) G-P(sol) polarization free energy of solvation -21.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds