Wall clock time and date at job start Mon Mar 8 2021 15:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08994 * 112.91026 * 130.31714 * 3 2 1 5 5 C 1.53787 * 113.61179 * 261.56870 * 3 2 1 6 6 C 1.53778 * 87.08035 * 89.11587 * 5 3 2 7 7 H 1.09004 * 113.61682 * 270.87724 * 6 5 3 8 8 S 1.81401 * 113.61050 * 140.06588 * 6 5 3 9 9 O 1.42093 * 110.54609 * 296.62051 * 8 6 5 10 10 O 1.42099 * 110.54502 * 73.37457 * 8 6 5 11 11 N 1.65606 * 104.44918 * 184.99764 * 8 6 5 12 12 C 1.47083 * 120.87855 * 269.72493 * 11 8 6 13 13 C 1.53699 * 108.27548 * 128.75324 * 12 11 8 14 14 N 1.46903 * 109.25857 * 54.08039 * 13 12 11 15 15 C 1.39613 * 111.00039 * 172.60658 * 14 13 12 16 16 C 1.34092 * 125.23559 * 304.02085 * 15 14 13 17 17 C 1.38590 * 114.71798 * 179.79741 * 16 15 14 18 18 C 1.33234 * 114.98022 * 0.49547 * 17 16 15 19 19 C 1.50699 * 125.12244 * 179.73519 * 18 17 16 20 20 O 1.42902 * 109.47215 * 299.97601 * 19 18 17 21 21 Si 1.86301 * 109.46630 * 179.97438 * 19 18 17 22 22 S 1.75857 * 109.74696 * 359.73593 * 18 17 16 23 23 C 1.46904 * 111.26672 * 296.75655 * 14 13 12 24 24 C 1.47076 * 120.88319 * 89.99723 * 11 8 6 25 25 C 1.53778 * 87.08449 * 25.43264 * 6 5 3 26 26 H 1.08998 * 113.61103 * 203.66847 * 5 3 2 27 27 H 1.08999 * 113.61167 * 334.56309 * 5 3 2 28 28 H 1.09001 * 109.62358 * 248.51874 * 12 11 8 29 29 H 1.08998 * 109.63131 * 9.10000 * 12 11 8 30 30 H 1.08997 * 109.64569 * 294.07566 * 13 12 11 31 31 H 1.08996 * 109.41734 * 173.94285 * 13 12 11 32 32 H 1.08002 * 122.64336 * 359.97438 * 16 15 14 33 33 H 1.07994 * 122.51009 * 180.21262 * 17 16 15 34 34 H 1.08995 * 109.47482 * 59.98079 * 19 18 17 35 35 H 0.96704 * 113.99714 * 299.99912 * 20 19 18 36 36 H 1.48502 * 109.99907 * 179.97438 * 21 19 18 37 37 H 1.48500 * 110.00249 * 301.31698 * 21 19 18 38 38 H 1.09000 * 109.49032 * 303.14590 * 23 14 13 39 39 H 1.09001 * 109.51474 * 183.07720 * 23 14 13 40 40 H 1.09004 * 109.62708 * 350.89941 * 24 11 8 41 41 H 1.09003 * 109.63201 * 111.28049 * 24 11 8 42 42 H 1.08993 * 113.61229 * 220.02023 * 25 6 5 43 43 H 1.09000 * 113.61263 * 89.11673 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 3.0321 0.6504 -0.7655 5 6 3.2239 0.2075 1.3939 6 6 3.1715 -1.3206 1.5574 7 1 2.2356 -1.6824 1.9833 8 16 4.6332 -2.0140 2.3780 9 8 5.7979 -1.7889 1.5960 10 8 4.6143 -1.7147 3.7670 11 7 4.4064 -3.6531 2.3104 12 6 3.7043 -4.3632 3.3903 13 6 2.5994 -5.2265 2.7608 14 7 3.1886 -6.0914 1.7299 15 6 2.2511 -7.0079 1.2501 16 6 1.5616 -7.8760 2.0045 17 6 0.6827 -8.6844 1.3011 18 6 0.6644 -8.4832 -0.0159 19 6 -0.1979 -9.2360 -0.9960 20 8 0.1145 -10.6290 -0.9334 21 14 0.1238 -8.6042 -2.7188 22 16 1.7982 -7.2069 -0.4377 23 6 3.7598 -5.2993 0.6325 24 6 4.9069 -4.4381 1.1719 25 6 3.2247 -1.4079 0.0231 26 1 4.2367 0.6095 1.3684 27 1 2.5721 0.7432 2.0840 28 1 4.4077 -4.9985 3.9285 29 1 3.2607 -3.6409 4.0756 30 1 1.8449 -4.5832 2.3082 31 1 2.1374 -5.8427 3.5320 32 1 1.6797 -7.9384 3.0762 33 1 0.0625 -9.4251 1.7837 34 1 -1.2481 -9.0875 -0.7449 35 1 1.0350 -10.8356 -1.1459 36 1 -0.7202 -9.3390 -3.6951 37 1 -0.1671 -7.1496 -2.7890 38 1 2.9891 -4.6549 0.2095 39 1 4.1393 -5.9680 -0.1402 40 1 5.2587 -3.7654 0.3897 41 1 5.7260 -5.0780 1.5001 42 1 2.5736 -2.1765 -0.3933 43 1 4.2378 -1.4477 -0.3771 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_80748_15608134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:15:28 Heat of formation + Delta-G solvation = 18.281474 kcal Electronic energy + Delta-G solvation = -29632.599286 eV Core-core repulsion = 25514.216419 eV Total energy + Delta-G solvation = -4118.382867 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.085 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.89041 -40.76481 -39.07801 -38.35850 -37.50974 -37.12905 -37.00380 -35.63556 -32.62101 -30.92718 -28.69022 -28.22630 -27.44226 -25.74576 -25.27054 -23.71717 -23.02710 -22.00220 -20.51436 -20.15949 -19.51265 -18.79102 -18.31892 -18.06679 -17.76071 -17.29729 -16.71901 -16.41346 -16.32266 -16.12063 -16.03800 -15.78738 -15.71569 -15.52896 -15.20930 -15.06638 -14.42033 -14.24133 -14.07871 -14.06181 -13.86569 -13.73519 -13.56592 -13.53504 -13.46024 -13.34909 -13.19332 -13.18542 -12.85264 -12.68028 -12.47669 -12.36102 -12.28432 -12.16889 -12.09708 -11.66601 -11.56794 -11.01440 -10.55665 -10.26191 -9.54349 -8.91821 -5.19199 -1.01886 -0.11600 0.27666 0.74177 1.20003 1.26198 1.45138 1.53357 1.55641 1.69401 1.86658 2.34762 2.40150 2.49631 2.64770 2.77108 3.09602 3.18507 3.24483 3.37649 3.51361 3.62844 3.72184 3.76015 3.80858 3.91550 4.00079 4.02074 4.04838 4.21348 4.23584 4.28009 4.32561 4.35364 4.36931 4.42339 4.54475 4.58184 4.62341 4.70795 4.74496 4.91884 5.13069 5.17649 5.35561 5.55922 5.71341 6.35693 6.47357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.217 3.783 3 C -0.009 4.009 4 H 0.137 0.863 5 C -0.094 4.094 6 C -0.637 4.637 7 H 0.152 0.848 8 S 2.615 3.385 9 O -0.941 6.941 10 O -0.945 6.945 11 N -1.002 6.002 12 C 0.125 3.875 13 C 0.040 3.960 14 N -0.444 5.444 15 C 0.023 3.977 16 C -0.174 4.174 17 C -0.078 4.078 18 C -0.235 4.235 19 C -0.022 4.022 20 O -0.536 6.536 21 Si 0.652 3.348 22 S 0.078 5.922 23 C 0.026 3.974 24 C 0.129 3.871 25 C -0.095 4.095 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.121 0.879 35 H 0.381 0.619 36 H -0.234 1.234 37 H -0.241 1.241 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -0.182 -2.212 4.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.102 4.102 3 C -0.032 4.032 4 H 0.154 0.846 5 C -0.134 4.134 6 C -0.745 4.745 7 H 0.170 0.830 8 S 2.708 3.292 9 O -0.931 6.931 10 O -0.935 6.935 11 N -0.839 5.839 12 C 0.000 4.000 13 C -0.088 4.088 14 N -0.161 5.161 15 C -0.191 4.191 16 C -0.207 4.207 17 C -0.108 4.108 18 C -0.352 4.352 19 C -0.136 4.136 20 O -0.341 6.341 21 Si 0.552 3.448 22 S 0.338 5.662 23 C -0.103 4.103 24 C 0.004 3.996 25 C -0.134 4.134 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.138 0.862 35 H 0.228 0.772 36 H -0.158 1.158 37 H -0.165 1.165 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.390 1.090 -3.474 4.355 hybrid contribution -1.631 -0.457 1.301 2.136 sum 0.759 0.633 -2.173 2.387 Atomic orbital electron populations 1.81341 1.12467 1.07641 1.07753 1.28364 0.94231 0.93825 0.93744 1.19495 0.82631 1.00320 1.00730 0.84563 1.22670 1.03808 0.90756 0.96179 1.32263 1.23551 1.08717 1.09970 0.83014 1.05098 0.76246 0.72889 0.74928 1.93625 1.42726 1.84044 1.72734 1.93628 1.87042 1.82892 1.29942 1.57883 1.71592 1.24630 1.29809 1.21689 0.94115 0.95968 0.88268 1.22891 0.96049 0.95179 0.94695 1.58867 1.28484 1.16450 1.12271 1.23663 0.98157 1.01212 0.96117 1.19985 1.00879 0.98386 1.01404 1.19918 0.98988 0.99564 0.92343 1.24525 1.05992 1.05969 0.98757 1.24333 0.99249 0.84156 1.05812 1.86516 1.33667 1.20868 1.93096 0.94998 0.91683 0.81063 0.77043 1.84292 1.37776 1.36774 1.07382 1.22838 0.98116 0.96716 0.92678 1.21520 0.95566 0.94723 0.87806 1.22730 1.04020 0.96608 0.90037 0.86630 0.88214 0.89252 0.88083 0.92939 0.88269 0.83952 0.83944 0.86170 0.77174 1.15762 1.16539 0.92485 0.88156 0.87917 0.89276 0.88805 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -1.30 18.54 42.16 0.78 -0.52 16 2 C 0.22 -0.15 14.77 -20.76 -0.31 -0.46 16 3 C -0.01 0.05 4.39 -92.59 -0.41 -0.36 16 4 H 0.14 -0.99 8.14 -51.93 -0.42 -1.42 16 5 C -0.09 0.45 7.24 -25.92 -0.19 0.27 16 6 C -0.64 2.81 4.22 -25.92 -0.11 2.70 16 7 H 0.15 -0.76 8.13 -51.93 -0.42 -1.18 16 8 S 2.62 -4.47 5.35 -107.50 -0.58 -5.04 16 9 O -0.94 -0.42 16.11 -57.54 -0.93 -1.35 16 10 O -0.94 -1.92 16.78 -57.54 -0.97 -2.88 16 11 N -1.00 2.76 3.25 -112.97 -0.37 2.39 16 12 C 0.13 -0.37 6.50 -3.36 -0.02 -0.39 16 13 C 0.04 -0.12 5.49 -3.46 -0.02 -0.14 16 14 N -0.44 0.82 4.71 -171.69 -0.81 0.02 16 15 C 0.02 -0.02 6.03 -15.46 -0.09 -0.11 16 16 C -0.17 0.06 9.48 -40.91 -0.39 -0.33 16 17 C -0.08 -0.01 10.01 -41.20 -0.41 -0.42 16 18 C -0.23 0.03 5.71 -36.05 -0.21 -0.18 16 19 C -0.02 0.01 2.96 36.01 0.11 0.11 16 20 O -0.54 -0.01 12.86 -35.23 -0.45 -0.47 16 21 Si 0.65 -0.57 30.96 -169.99 -5.26 -5.83 16 22 S 0.08 -0.07 18.68 -107.50 -2.01 -2.08 16 23 C 0.03 -0.09 4.70 -3.70 -0.02 -0.10 16 24 C 0.13 -0.47 6.46 -3.61 -0.02 -0.49 16 25 C -0.09 0.53 7.21 -25.92 -0.19 0.35 16 26 H 0.12 -0.73 8.10 -51.93 -0.42 -1.15 16 27 H 0.10 -0.48 8.08 -51.93 -0.42 -0.90 16 28 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 29 H 0.10 -0.36 7.18 -51.93 -0.37 -0.73 16 30 H 0.05 -0.16 8.14 -51.93 -0.42 -0.59 16 31 H 0.10 -0.34 7.16 -51.93 -0.37 -0.71 16 32 H 0.14 -0.19 7.60 -52.49 -0.40 -0.59 16 33 H 0.14 -0.05 8.06 -52.49 -0.42 -0.47 16 34 H 0.12 -0.01 7.96 -51.93 -0.41 -0.42 16 35 H 0.38 -1.39 8.70 45.56 0.40 -0.99 16 36 H -0.23 -0.43 7.11 56.52 0.40 -0.03 16 37 H -0.24 -0.32 7.11 56.52 0.40 0.08 16 38 H 0.06 -0.23 8.10 -51.93 -0.42 -0.65 16 39 H 0.10 -0.38 7.43 -51.93 -0.39 -0.77 16 40 H 0.10 -0.52 7.19 -51.93 -0.37 -0.90 16 41 H 0.09 -0.28 8.14 -51.93 -0.42 -0.71 16 42 H 0.09 -0.56 8.08 -51.93 -0.42 -0.98 16 43 H 0.12 -0.86 7.54 -51.93 -0.39 -1.25 16 LS Contribution 378.53 15.07 5.70 5.70 Total: 0.00 -11.75 378.53 -12.88 -24.63 By element: Atomic # 1 Polarization: -9.29 SS G_CDS: -5.73 Total: -15.02 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.27 Total: 0.45 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -0.40 Total: 1.88 kcal Atomic # 8 Polarization: -2.35 SS G_CDS: -2.35 Total: -4.70 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.26 Total: -5.83 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -2.58 Total: -7.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -11.75 -12.88 -24.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80748_15608134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.916 kcal (2) G-P(sol) polarization free energy of solvation -11.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds