Wall clock time and date at job start Mon Mar 8 2021 15:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08994 * 112.91026 * 130.31714 * 3 2 1 5 5 C 1.53787 * 113.61179 * 261.56870 * 3 2 1 6 6 C 1.53778 * 87.08035 * 89.11587 * 5 3 2 7 7 H 1.09004 * 113.61682 * 270.87724 * 6 5 3 8 8 S 1.81401 * 113.61050 * 140.06588 * 6 5 3 9 9 O 1.42093 * 110.54609 * 296.62051 * 8 6 5 10 10 O 1.42099 * 110.54502 * 73.37457 * 8 6 5 11 11 N 1.65606 * 104.44918 * 184.99764 * 8 6 5 12 12 C 1.47083 * 120.87855 * 269.72493 * 11 8 6 13 13 C 1.53699 * 108.27548 * 128.75324 * 12 11 8 14 14 N 1.46903 * 109.25857 * 54.08039 * 13 12 11 15 15 C 1.39613 * 111.00039 * 172.60658 * 14 13 12 16 16 C 1.34092 * 125.23559 * 304.02085 * 15 14 13 17 17 C 1.38590 * 114.71798 * 179.79741 * 16 15 14 18 18 C 1.33234 * 114.98022 * 0.49547 * 17 16 15 19 19 C 1.50699 * 125.12244 * 179.73519 * 18 17 16 20 20 O 1.42902 * 109.47215 * 299.97601 * 19 18 17 21 21 Si 1.86301 * 109.46630 * 179.97438 * 19 18 17 22 22 S 1.75857 * 109.74696 * 359.73593 * 18 17 16 23 23 C 1.46904 * 111.26672 * 296.75655 * 14 13 12 24 24 C 1.47076 * 120.88319 * 89.99723 * 11 8 6 25 25 C 1.53778 * 87.08449 * 25.43264 * 6 5 3 26 26 H 1.08998 * 113.61103 * 203.66847 * 5 3 2 27 27 H 1.08999 * 113.61167 * 334.56309 * 5 3 2 28 28 H 1.09001 * 109.62358 * 248.51874 * 12 11 8 29 29 H 1.08998 * 109.63131 * 9.10000 * 12 11 8 30 30 H 1.08997 * 109.64569 * 294.07566 * 13 12 11 31 31 H 1.08996 * 109.41734 * 173.94285 * 13 12 11 32 32 H 1.08002 * 122.64336 * 359.97438 * 16 15 14 33 33 H 1.07994 * 122.51009 * 180.21262 * 17 16 15 34 34 H 1.08995 * 109.47482 * 59.98079 * 19 18 17 35 35 H 0.96704 * 113.99714 * 299.99912 * 20 19 18 36 36 H 1.48502 * 109.99907 * 179.97438 * 21 19 18 37 37 H 1.48500 * 110.00249 * 301.31698 * 21 19 18 38 38 H 1.09000 * 109.49032 * 303.14590 * 23 14 13 39 39 H 1.09001 * 109.51474 * 183.07720 * 23 14 13 40 40 H 1.09004 * 109.62708 * 350.89941 * 24 11 8 41 41 H 1.09003 * 109.63201 * 111.28049 * 24 11 8 42 42 H 1.08993 * 113.61229 * 220.02023 * 25 6 5 43 43 H 1.09000 * 113.61263 * 89.11673 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 3.0321 0.6504 -0.7655 5 6 3.2239 0.2075 1.3939 6 6 3.1715 -1.3206 1.5574 7 1 2.2356 -1.6824 1.9833 8 16 4.6332 -2.0140 2.3780 9 8 5.7979 -1.7889 1.5960 10 8 4.6143 -1.7147 3.7670 11 7 4.4064 -3.6531 2.3104 12 6 3.7043 -4.3632 3.3903 13 6 2.5994 -5.2265 2.7608 14 7 3.1886 -6.0914 1.7299 15 6 2.2511 -7.0079 1.2501 16 6 1.5616 -7.8760 2.0045 17 6 0.6827 -8.6844 1.3011 18 6 0.6644 -8.4832 -0.0159 19 6 -0.1979 -9.2360 -0.9960 20 8 0.1145 -10.6290 -0.9334 21 14 0.1238 -8.6042 -2.7188 22 16 1.7982 -7.2069 -0.4377 23 6 3.7598 -5.2993 0.6325 24 6 4.9069 -4.4381 1.1719 25 6 3.2247 -1.4079 0.0231 26 1 4.2367 0.6095 1.3684 27 1 2.5721 0.7432 2.0840 28 1 4.4077 -4.9985 3.9285 29 1 3.2607 -3.6409 4.0756 30 1 1.8449 -4.5832 2.3082 31 1 2.1374 -5.8427 3.5320 32 1 1.6797 -7.9384 3.0762 33 1 0.0625 -9.4251 1.7837 34 1 -1.2481 -9.0875 -0.7449 35 1 1.0350 -10.8356 -1.1459 36 1 -0.7202 -9.3390 -3.6951 37 1 -0.1671 -7.1496 -2.7890 38 1 2.9891 -4.6549 0.2095 39 1 4.1393 -5.9680 -0.1402 40 1 5.2587 -3.7654 0.3897 41 1 5.7260 -5.0780 1.5001 42 1 2.5736 -2.1765 -0.3933 43 1 4.2378 -1.4477 -0.3771 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_80748_15608134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:15:27 Heat of formation + Delta-G solvation = 14.587835 kcal Electronic energy + Delta-G solvation = -29632.759454 eV Core-core repulsion = 25514.216419 eV Total energy + Delta-G solvation = -4118.543035 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.085 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.68191 -40.46202 -38.99282 -38.30705 -37.42440 -37.08484 -36.99133 -35.47723 -32.36719 -30.83963 -28.41192 -28.06482 -27.01662 -25.60174 -25.07320 -23.62778 -22.77866 -21.75959 -20.40361 -19.99520 -19.33332 -18.58512 -18.13852 -17.78504 -17.68213 -17.14476 -16.61621 -16.27001 -16.04417 -16.00835 -15.84343 -15.68333 -15.53113 -15.34318 -15.05914 -14.92886 -14.41433 -14.01850 -13.96115 -13.80977 -13.72107 -13.64232 -13.47285 -13.44050 -13.37684 -13.25431 -13.05767 -13.01157 -12.73231 -12.42866 -12.40324 -12.16806 -12.09552 -11.95965 -11.73223 -11.60440 -11.31882 -10.87121 -10.51389 -10.03637 -9.46084 -8.79971 -5.15369 -0.84312 -0.04990 0.35029 0.79733 1.24192 1.45202 1.54665 1.58225 1.66705 1.74697 1.86730 2.54210 2.69843 2.75893 2.87221 3.07394 3.31969 3.47493 3.49303 3.54929 3.81348 3.84962 3.93351 4.00702 4.06133 4.19402 4.28525 4.39601 4.44796 4.46480 4.52339 4.54689 4.59039 4.63020 4.68316 4.74005 4.80652 4.86374 4.90705 4.98782 5.03760 5.06571 5.22297 5.40300 5.46830 5.72284 5.85638 6.47451 6.69850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.247 3.753 3 C -0.008 4.008 4 H 0.171 0.829 5 C -0.101 4.101 6 C -0.624 4.624 7 H 0.158 0.842 8 S 2.622 3.378 9 O -0.965 6.965 10 O -0.989 6.989 11 N -1.002 6.002 12 C 0.125 3.875 13 C 0.042 3.958 14 N -0.451 5.451 15 C 0.023 3.977 16 C -0.188 4.188 17 C -0.085 4.085 18 C -0.246 4.246 19 C -0.025 4.025 20 O -0.551 6.551 21 Si 0.725 3.275 22 S 0.093 5.907 23 C 0.023 3.977 24 C 0.127 3.873 25 C -0.090 4.090 26 H 0.134 0.866 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.396 0.604 36 H -0.274 1.274 37 H -0.268 1.268 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 0.343 -3.103 5.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.070 4.070 3 C -0.030 4.030 4 H 0.188 0.812 5 C -0.141 4.141 6 C -0.736 4.736 7 H 0.176 0.824 8 S 2.719 3.281 9 O -0.955 6.955 10 O -0.980 6.980 11 N -0.840 5.840 12 C -0.001 4.001 13 C -0.086 4.086 14 N -0.168 5.168 15 C -0.191 4.191 16 C -0.220 4.220 17 C -0.116 4.116 18 C -0.364 4.364 19 C -0.138 4.138 20 O -0.359 6.359 21 Si 0.629 3.371 22 S 0.352 5.648 23 C -0.106 4.106 24 C 0.002 3.998 25 C -0.130 4.130 26 H 0.152 0.848 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.246 0.754 36 H -0.199 1.199 37 H -0.194 1.194 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.440 1.592 -4.331 5.755 hybrid contribution -1.918 -0.605 1.574 2.554 sum 1.522 0.987 -2.757 3.300 Atomic orbital electron populations 1.81368 1.14884 1.10238 1.10329 1.29099 0.94920 0.91555 0.91470 1.19772 0.79914 1.01670 1.01686 0.81196 1.22868 1.04923 0.90154 0.96125 1.32161 1.21580 1.09084 1.10750 0.82416 1.04685 0.76643 0.72858 0.73889 1.93586 1.44747 1.84459 1.72740 1.93569 1.87947 1.83636 1.32832 1.57749 1.71737 1.24356 1.30147 1.21697 0.94054 0.95982 0.88355 1.22895 0.96007 0.95073 0.94587 1.58876 1.28102 1.16886 1.12934 1.23809 0.97890 1.01209 0.96223 1.20074 1.01307 0.98770 1.01838 1.20006 0.99220 0.99773 0.92605 1.24584 1.06493 1.06497 0.98792 1.24398 0.99018 0.84177 1.06239 1.86476 1.35214 1.20988 1.93220 0.94146 0.90364 0.77929 0.74655 1.84153 1.37198 1.36221 1.07179 1.22935 0.98385 0.96860 0.92375 1.21630 0.95302 0.94920 0.87918 1.22902 1.05296 0.96252 0.88520 0.84750 0.88359 0.89782 0.87736 0.92483 0.87980 0.83431 0.84077 0.86824 0.75418 1.19923 1.19396 0.91385 0.87565 0.86131 0.89896 0.87943 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -3.31 18.54 20.01 0.37 -2.94 16 2 C 0.25 -0.54 14.77 89.44 1.32 0.78 16 3 C -0.01 0.10 4.39 -12.07 -0.05 0.05 16 4 H 0.17 -3.08 8.14 -2.39 -0.02 -3.10 16 5 C -0.10 1.14 7.24 31.12 0.23 1.36 16 6 C -0.62 6.32 4.22 31.12 0.13 6.45 16 7 H 0.16 -1.73 8.13 -2.38 -0.02 -1.75 16 8 S 2.62 -9.79 5.35 -56.49 -0.30 -10.09 16 9 O -0.96 -0.19 16.11 -127.65 -2.06 -2.25 16 10 O -0.99 -4.76 16.78 -127.65 -2.14 -6.90 16 11 N -1.00 5.82 3.25 -511.33 -1.66 4.15 16 12 C 0.12 -0.71 6.50 86.50 0.56 -0.14 16 13 C 0.04 -0.26 5.49 86.54 0.48 0.22 16 14 N -0.45 1.89 4.71 -697.12 -3.28 -1.40 16 15 C 0.02 -0.04 6.03 82.51 0.50 0.46 16 16 C -0.19 0.09 9.48 21.41 0.20 0.29 16 17 C -0.09 -0.05 10.01 21.22 0.21 0.16 16 18 C -0.25 0.02 5.71 24.56 0.14 0.17 16 19 C -0.03 0.01 2.96 71.24 0.21 0.22 16 20 O -0.55 -0.14 12.86 -148.98 -1.92 -2.05 16 21 Si 0.73 -1.05 30.96 68.60 2.12 1.07 16 22 S 0.09 -0.22 18.68 -56.49 -1.06 -1.28 16 23 C 0.02 -0.18 4.70 86.38 0.41 0.22 16 24 C 0.13 -1.02 6.46 86.35 0.56 -0.47 16 25 C -0.09 1.24 7.21 31.12 0.22 1.47 16 26 H 0.13 -1.98 8.10 -2.39 -0.02 -2.00 16 27 H 0.10 -1.03 8.08 -2.39 -0.02 -1.05 16 28 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.10 -0.67 7.18 -2.39 -0.02 -0.69 16 30 H 0.06 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.10 -0.69 7.16 -2.39 -0.02 -0.70 16 32 H 0.15 -0.34 7.60 -2.91 -0.02 -0.36 16 33 H 0.14 0.02 8.06 -2.91 -0.02 0.00 16 34 H 0.11 0.07 7.96 -2.39 -0.02 0.06 16 35 H 0.40 -2.95 8.70 -74.05 -0.64 -3.59 16 36 H -0.27 -1.33 7.11 99.48 0.71 -0.62 16 37 H -0.27 -0.78 7.11 99.48 0.71 -0.07 16 38 H 0.07 -0.67 8.10 -2.39 -0.02 -0.69 16 39 H 0.11 -0.95 7.43 -2.39 -0.02 -0.97 16 40 H 0.12 -1.42 7.19 -2.38 -0.02 -1.43 16 41 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 42 H 0.10 -1.50 8.08 -2.39 -0.02 -1.52 16 43 H 0.14 -2.48 7.54 -2.39 -0.02 -2.50 16 Total: 0.00 -28.45 378.53 -4.37 -32.81 By element: Atomic # 1 Polarization: -22.81 SS G_CDS: 0.44 Total: -22.37 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 5.11 Total: 11.24 kcal Atomic # 7 Polarization: 4.39 SS G_CDS: -4.58 Total: -0.19 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -6.11 Total: -11.20 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.12 Total: 1.07 kcal Atomic # 16 Polarization: -10.01 SS G_CDS: -1.36 Total: -11.37 kcal Total: -28.45 -4.37 -32.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_80748_15608134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.402 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds