Wall clock time and date at job start Mon Mar 8 2021 12:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00074 * 2 1 4 4 O 1.20830 * 119.99949 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00220 * 179.72353 * 3 2 1 6 6 H 1.08996 * 112.84878 * 311.47424 * 5 3 2 7 7 C 1.53778 * 113.61049 * 82.78248 * 5 3 2 8 8 C 1.53781 * 87.08102 * 139.97920 * 7 5 3 9 9 H 1.09001 * 113.61191 * 89.11524 * 8 7 5 10 10 S 1.81398 * 113.69350 * 220.00459 * 8 7 5 11 11 O 1.42094 * 110.54278 * 19.49031 * 10 8 7 12 12 O 1.42101 * 110.54440 * 156.24208 * 10 8 7 13 13 O 1.52198 * 104.45299 * 267.86633 * 10 8 7 14 14 C 1.35898 * 113.99935 * 74.31723 * 13 10 8 15 15 C 1.38713 * 120.05614 * 264.18275 * 14 13 10 16 16 C 1.50702 * 120.02889 * 0.02562 * 15 14 13 17 17 C 1.38164 * 119.94139 * 179.76877 * 15 14 13 18 18 C 1.38248 * 120.05841 * 0.48717 * 17 15 14 19 19 C 1.38291 * 120.10740 * 359.76647 * 18 17 15 20 20 C 1.38117 * 120.05569 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.02575 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.47262 * 254.97728 * 21 20 19 23 23 Si 1.86298 * 109.47041 * 14.98024 * 21 20 19 24 24 C 1.53780 * 87.08374 * 334.56729 * 8 7 5 25 25 H 1.08999 * 109.46889 * 299.99763 * 1 2 3 26 26 H 1.08997 * 109.47114 * 59.99947 * 1 2 3 27 27 H 1.09002 * 109.46703 * 179.97438 * 1 2 3 28 28 H 1.08999 * 113.61674 * 254.53099 * 7 5 3 29 29 H 1.09000 * 113.61664 * 25.43277 * 7 5 3 30 30 H 1.08995 * 109.47065 * 87.41428 * 16 15 14 31 31 H 1.08997 * 109.46776 * 207.41008 * 16 15 14 32 32 H 1.09001 * 109.46943 * 327.41071 * 16 15 14 33 33 H 1.08007 * 119.97328 * 180.23486 * 17 15 14 34 34 H 1.07997 * 119.94610 * 179.75136 * 18 17 15 35 35 H 1.08001 * 119.96668 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.46995 * 134.97957 * 21 20 19 37 37 H 0.96705 * 113.99706 * 59.99959 * 22 21 20 38 38 H 1.48503 * 109.99778 * 179.97438 * 23 21 20 39 39 H 1.48498 * 110.00086 * 301.31567 * 23 21 20 40 40 H 1.09001 * 113.61190 * 270.88323 * 24 8 7 41 41 H 1.08991 * 113.69283 * 139.98697 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0063 6 1 4.0206 0.6344 0.7622 7 6 4.1966 1.1273 -1.3886 8 6 5.1849 2.2296 -0.9723 9 1 6.0827 1.8496 -0.4849 10 16 5.5498 3.4182 -2.2931 11 8 4.5416 3.3770 -3.2936 12 8 5.9879 4.6538 -1.7450 13 8 6.7846 2.8541 -2.9813 14 6 6.5347 1.7732 -3.7661 15 6 6.7153 0.4930 -3.2635 16 6 7.1884 0.2991 -1.8459 17 6 6.4559 -0.6043 -4.0620 18 6 6.0264 -0.4271 -5.3641 19 6 5.8507 0.8482 -5.8692 20 6 6.1045 1.9483 -5.0736 21 6 5.9134 3.3378 -5.6249 22 8 7.1887 3.9210 -5.8994 23 14 4.9188 3.2505 -7.1977 24 6 4.1077 2.7143 0.0123 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.6677 0.1585 -1.5546 29 1 3.5322 1.4208 -2.2013 30 1 6.3297 0.2880 -1.1746 31 1 7.7230 -0.6475 -1.7676 32 1 7.8546 1.1166 -1.5702 33 1 6.5927 -1.6014 -3.6700 34 1 5.8281 -1.2861 -5.9880 35 1 5.5155 0.9840 -6.8868 36 1 5.3841 3.9491 -4.8938 37 1 7.7159 3.4286 -6.5434 38 1 4.7228 4.6146 -7.7510 39 1 5.6143 2.3939 -8.1915 40 1 3.4189 3.4417 -0.4174 41 1 4.5055 3.0271 0.9776 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8157786_13206342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:44:08 Heat of formation + Delta-G solvation = -139.536404 kcal Electronic energy + Delta-G solvation = -30178.442222 eV Core-core repulsion = 25927.359906 eV Total energy + Delta-G solvation = -4251.082315 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.095 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58293 -41.94460 -39.79416 -39.42516 -38.35428 -37.87756 -37.37630 -37.17851 -34.32674 -32.02903 -30.00080 -28.71274 -27.73086 -27.22052 -26.99967 -24.25521 -23.40759 -22.39271 -21.65467 -20.83335 -20.08238 -19.11793 -18.80561 -18.47202 -18.13382 -17.66857 -17.42133 -17.16676 -16.84170 -16.53401 -16.37418 -15.94297 -15.48908 -15.04727 -14.93638 -14.78130 -14.54720 -14.45899 -14.07657 -13.99822 -13.99040 -13.71110 -13.59714 -13.52891 -13.32692 -13.19185 -13.13647 -13.04144 -12.89232 -12.70120 -12.61326 -12.06239 -12.01940 -11.84619 -11.71568 -11.62219 -11.28702 -10.54981 -10.07990 -10.00570 -4.91480 -1.12604 -0.09947 -0.06875 0.97069 1.05877 1.28828 1.54440 1.59876 1.97023 2.22197 2.31611 2.53010 2.77238 3.02688 3.16118 3.26650 3.37201 3.39876 3.50003 3.64573 3.70598 3.81106 3.95046 3.95545 4.00846 4.11480 4.12796 4.19754 4.20722 4.27253 4.28556 4.39203 4.46655 4.50106 4.56241 4.64763 4.76116 4.82667 4.86523 4.99188 5.05365 5.13789 5.29934 5.59020 6.43127 6.63305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.096 4.096 6 H 0.137 0.863 7 C -0.098 4.098 8 C -0.660 4.660 9 H 0.170 0.830 10 S 2.595 3.405 11 O -0.940 6.940 12 O -0.918 6.918 13 O -0.649 6.649 14 C 0.080 3.920 15 C -0.079 4.079 16 C -0.151 4.151 17 C -0.103 4.103 18 C -0.087 4.087 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.108 4.108 22 O -0.522 6.522 23 Si 0.705 3.295 24 C -0.085 4.085 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.373 0.627 38 H -0.252 1.252 39 H -0.256 1.256 40 H 0.108 0.892 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.183 -9.765 0.611 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.116 4.116 6 H 0.155 0.845 7 C -0.135 4.135 8 C -0.765 4.765 9 H 0.187 0.813 10 S 2.690 3.310 11 O -0.939 6.939 12 O -0.916 6.916 13 O -0.607 6.607 14 C 0.039 3.961 15 C -0.081 4.081 16 C -0.207 4.207 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.134 4.134 20 C -0.081 4.081 21 C -0.217 4.217 22 O -0.328 6.328 23 Si 0.606 3.394 24 C -0.123 4.123 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.221 0.779 38 H -0.177 1.177 39 H -0.181 1.181 40 H 0.126 0.874 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.489 -8.159 -0.162 8.295 hybrid contribution 1.122 -0.366 0.596 1.322 sum -0.367 -8.525 0.434 8.544 Atomic orbital electron populations 1.23359 0.75674 1.04118 1.02915 1.86501 1.23928 1.33019 1.83764 1.23450 0.91476 0.81665 0.72472 1.90715 1.66829 1.36383 1.44573 1.22439 0.87906 1.00209 1.01023 0.84485 1.22895 0.95643 0.98454 0.96548 1.32552 1.08456 1.16396 1.19137 0.81289 1.05685 0.73453 0.75865 0.75953 1.93571 1.60964 1.86608 1.52741 1.93670 1.79174 1.38663 1.80069 1.85690 1.59644 1.50438 1.64975 1.17681 1.06058 0.82454 0.89934 1.20028 0.99161 0.90964 0.97973 1.21451 1.02648 1.04809 0.91806 1.21066 0.99119 0.98234 0.93714 1.21370 0.96470 0.97322 0.95446 1.21163 1.00173 0.91703 1.00327 1.20478 0.97694 0.97372 0.92536 1.25667 0.91313 0.92573 1.12153 1.86706 1.28184 1.53022 1.64857 0.94490 0.88065 0.82417 0.74474 1.22594 0.93873 0.95736 1.00135 0.91653 0.91525 0.87745 0.87442 0.86665 0.89067 0.89508 0.90208 0.84038 0.84209 0.84004 0.84379 0.77948 1.17660 1.18118 0.87407 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 101.05 1.07 1.02 16 2 O -0.36 -0.05 10.57 -39.26 -0.41 -0.46 16 3 C 0.47 0.37 7.48 36.01 0.27 0.64 16 4 O -0.50 -1.97 15.65 -18.75 -0.29 -2.27 16 5 C -0.10 0.22 4.26 -90.96 -0.39 -0.16 16 6 H 0.14 -0.69 8.14 -51.93 -0.42 -1.11 16 7 C -0.10 0.28 5.96 -25.92 -0.15 0.12 16 8 C -0.66 1.32 2.79 -25.92 -0.07 1.24 16 9 H 0.17 -0.82 5.85 -51.93 -0.30 -1.12 16 10 S 2.60 6.41 4.95 -107.50 -0.53 5.88 16 11 O -0.94 -3.07 12.43 -67.04 -0.83 -3.91 16 12 O -0.92 -5.87 18.09 -67.04 -1.21 -7.08 16 13 O -0.65 -1.73 8.68 -51.74 -0.45 -2.18 16 14 C 0.08 0.09 4.84 -39.22 -0.19 -0.09 16 15 C -0.08 0.13 4.61 -104.47 -0.48 -0.35 16 16 C -0.15 0.58 7.88 36.01 0.28 0.87 16 17 C -0.10 0.33 9.69 -39.60 -0.38 -0.05 16 18 C -0.09 0.26 10.04 -39.56 -0.40 -0.14 16 19 C -0.12 0.15 8.66 -39.61 -0.34 -0.19 16 20 C -0.08 -0.10 4.61 -104.47 -0.48 -0.58 16 21 C -0.11 -0.30 2.15 36.01 0.08 -0.22 16 22 O -0.52 -1.88 12.88 -35.23 -0.45 -2.34 16 23 Si 0.71 0.38 30.25 -169.99 -5.14 -4.76 16 24 C -0.09 0.12 6.99 -25.92 -0.18 -0.06 16 25 H 0.06 -0.08 8.13 -51.93 -0.42 -0.51 16 26 H 0.07 -0.09 8.13 -51.93 -0.42 -0.51 16 27 H 0.10 -0.41 8.14 -51.93 -0.42 -0.83 16 28 H 0.11 -0.56 5.87 -51.93 -0.30 -0.86 16 29 H 0.12 -0.23 7.27 -51.93 -0.38 -0.61 16 30 H 0.09 -0.52 3.59 -51.93 -0.19 -0.71 16 31 H 0.09 -0.45 8.07 -51.93 -0.42 -0.87 16 32 H 0.08 -0.26 7.48 -51.93 -0.39 -0.64 16 33 H 0.14 -0.81 8.06 -52.48 -0.42 -1.23 16 34 H 0.14 -0.76 8.06 -52.49 -0.42 -1.18 16 35 H 0.14 -0.38 4.86 -52.49 -0.26 -0.64 16 36 H 0.14 0.58 4.73 -51.93 -0.25 0.34 16 37 H 0.37 -0.12 8.70 45.56 0.40 0.28 16 38 H -0.25 -0.93 7.11 56.52 0.40 -0.53 16 39 H -0.26 -0.12 6.68 56.52 0.38 0.26 16 40 H 0.11 -0.01 7.39 -51.93 -0.38 -0.39 16 41 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 LS Contribution 338.42 15.07 5.10 5.10 Total: 0.00 -11.33 338.42 -10.25 -21.58 By element: Atomic # 1 Polarization: -6.96 SS G_CDS: -4.65 Total: -11.61 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.37 Total: 2.05 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -3.66 Total: -18.24 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: -5.14 Total: -4.76 kcal Atomic # 16 Polarization: 6.41 SS G_CDS: -0.53 Total: 5.88 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -11.33 -10.25 -21.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8157786_13206342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.956 kcal (2) G-P(sol) polarization free energy of solvation -11.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds