Wall clock time and date at job start Mon Mar 8 2021 12:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00074 * 2 1 4 4 O 1.20830 * 119.99949 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00220 * 179.72353 * 3 2 1 6 6 H 1.08996 * 112.84878 * 311.47424 * 5 3 2 7 7 C 1.53778 * 113.61049 * 82.78248 * 5 3 2 8 8 C 1.53781 * 87.08102 * 139.97920 * 7 5 3 9 9 H 1.09001 * 113.61191 * 89.11524 * 8 7 5 10 10 S 1.81398 * 113.69350 * 220.00459 * 8 7 5 11 11 O 1.42094 * 110.54278 * 19.49031 * 10 8 7 12 12 O 1.42101 * 110.54440 * 156.24208 * 10 8 7 13 13 O 1.52198 * 104.45299 * 267.86633 * 10 8 7 14 14 C 1.35898 * 113.99935 * 74.31723 * 13 10 8 15 15 C 1.38713 * 120.05614 * 264.18275 * 14 13 10 16 16 C 1.50702 * 120.02889 * 0.02562 * 15 14 13 17 17 C 1.38164 * 119.94139 * 179.76877 * 15 14 13 18 18 C 1.38248 * 120.05841 * 0.48717 * 17 15 14 19 19 C 1.38291 * 120.10740 * 359.76647 * 18 17 15 20 20 C 1.38117 * 120.05569 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.02575 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.47262 * 254.97728 * 21 20 19 23 23 Si 1.86298 * 109.47041 * 14.98024 * 21 20 19 24 24 C 1.53780 * 87.08374 * 334.56729 * 8 7 5 25 25 H 1.08999 * 109.46889 * 299.99763 * 1 2 3 26 26 H 1.08997 * 109.47114 * 59.99947 * 1 2 3 27 27 H 1.09002 * 109.46703 * 179.97438 * 1 2 3 28 28 H 1.08999 * 113.61674 * 254.53099 * 7 5 3 29 29 H 1.09000 * 113.61664 * 25.43277 * 7 5 3 30 30 H 1.08995 * 109.47065 * 87.41428 * 16 15 14 31 31 H 1.08997 * 109.46776 * 207.41008 * 16 15 14 32 32 H 1.09001 * 109.46943 * 327.41071 * 16 15 14 33 33 H 1.08007 * 119.97328 * 180.23486 * 17 15 14 34 34 H 1.07997 * 119.94610 * 179.75136 * 18 17 15 35 35 H 1.08001 * 119.96668 * 179.97438 * 19 18 17 36 36 H 1.09006 * 109.46995 * 134.97957 * 21 20 19 37 37 H 0.96705 * 113.99706 * 59.99959 * 22 21 20 38 38 H 1.48503 * 109.99778 * 179.97438 * 23 21 20 39 39 H 1.48498 * 110.00086 * 301.31567 * 23 21 20 40 40 H 1.09001 * 113.61190 * 270.88323 * 24 8 7 41 41 H 1.08991 * 113.69283 * 139.98697 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0063 6 1 4.0206 0.6344 0.7622 7 6 4.1966 1.1273 -1.3886 8 6 5.1849 2.2296 -0.9723 9 1 6.0827 1.8496 -0.4849 10 16 5.5498 3.4182 -2.2931 11 8 4.5416 3.3770 -3.2936 12 8 5.9879 4.6538 -1.7450 13 8 6.7846 2.8541 -2.9813 14 6 6.5347 1.7732 -3.7661 15 6 6.7153 0.4930 -3.2635 16 6 7.1884 0.2991 -1.8459 17 6 6.4559 -0.6043 -4.0620 18 6 6.0264 -0.4271 -5.3641 19 6 5.8507 0.8482 -5.8692 20 6 6.1045 1.9483 -5.0736 21 6 5.9134 3.3378 -5.6249 22 8 7.1887 3.9210 -5.8994 23 14 4.9188 3.2505 -7.1977 24 6 4.1077 2.7143 0.0123 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.6677 0.1585 -1.5546 29 1 3.5322 1.4208 -2.2013 30 1 6.3297 0.2880 -1.1746 31 1 7.7230 -0.6475 -1.7676 32 1 7.8546 1.1166 -1.5702 33 1 6.5927 -1.6014 -3.6700 34 1 5.8281 -1.2861 -5.9880 35 1 5.5155 0.9840 -6.8868 36 1 5.3841 3.9491 -4.8938 37 1 7.7159 3.4286 -6.5434 38 1 4.7228 4.6146 -7.7510 39 1 5.6143 2.3939 -8.1915 40 1 3.4189 3.4417 -0.4174 41 1 4.5055 3.0271 0.9776 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8157786_13206342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:44:07 Heat of formation + Delta-G solvation = -142.822909 kcal Electronic energy + Delta-G solvation = -30178.584735 eV Core-core repulsion = 25927.359906 eV Total energy + Delta-G solvation = -4251.224829 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.095 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.53643 -41.93285 -39.71376 -39.36043 -38.54516 -38.01538 -37.44553 -37.38564 -34.14917 -31.88665 -29.92013 -28.50193 -27.62880 -27.07970 -26.92557 -24.19343 -23.38341 -22.26834 -21.62574 -20.72503 -20.11827 -19.13614 -18.89456 -18.50180 -18.20175 -17.61538 -17.38936 -17.05804 -16.80255 -16.47483 -16.43247 -16.00462 -15.50332 -14.90791 -14.81048 -14.65430 -14.50757 -14.38925 -14.10709 -14.06230 -13.89307 -13.65746 -13.55762 -13.53204 -13.35688 -13.31673 -13.07216 -12.90856 -12.77636 -12.58596 -12.46038 -12.01290 -11.85672 -11.83026 -11.74212 -11.61582 -11.30527 -10.66058 -9.92379 -9.81786 -4.99828 -1.18483 0.03240 0.10455 0.93930 1.04108 1.18843 1.43560 1.68989 1.85603 2.30374 2.43868 2.51514 2.89273 3.11384 3.19231 3.30111 3.46832 3.58005 3.63314 3.77729 3.90641 3.97792 4.15798 4.23289 4.26347 4.29900 4.31780 4.35226 4.38481 4.40870 4.50031 4.65574 4.67315 4.73168 4.78538 4.80705 4.92172 5.00066 5.14871 5.22399 5.31098 5.32986 5.36543 5.82096 6.40502 6.62801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.464 3.536 4 O -0.540 6.540 5 C -0.085 4.085 6 H 0.178 0.822 7 C -0.096 4.096 8 C -0.630 4.630 9 H 0.205 0.795 10 S 2.579 3.421 11 O -0.962 6.962 12 O -0.977 6.977 13 O -0.661 6.661 14 C 0.047 3.953 15 C -0.077 4.077 16 C -0.159 4.159 17 C -0.097 4.097 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.101 4.101 21 C -0.134 4.134 22 O -0.549 6.549 23 Si 0.779 3.221 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.132 0.868 28 H 0.143 0.857 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.112 0.888 37 H 0.386 0.614 38 H -0.305 1.305 39 H -0.242 1.242 40 H 0.084 0.916 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 -14.223 1.262 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.430 6.430 5 C -0.104 4.104 6 H 0.195 0.805 7 C -0.134 4.134 8 C -0.740 4.740 9 H 0.222 0.778 10 S 2.681 3.319 11 O -0.960 6.960 12 O -0.976 6.976 13 O -0.620 6.620 14 C 0.005 3.995 15 C -0.079 4.079 16 C -0.214 4.214 17 C -0.114 4.114 18 C -0.098 4.098 19 C -0.141 4.141 20 C -0.103 4.103 21 C -0.241 4.241 22 O -0.358 6.358 23 Si 0.680 3.320 24 C -0.141 4.141 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.150 0.850 28 H 0.161 0.839 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.195 0.805 34 H 0.189 0.811 35 H 0.171 0.829 36 H 0.130 0.870 37 H 0.235 0.765 38 H -0.233 1.233 39 H -0.167 1.167 40 H 0.103 0.897 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.009 -12.616 0.467 12.665 hybrid contribution 0.953 0.973 0.417 1.424 sum -0.056 -11.643 0.884 11.677 Atomic orbital electron populations 1.23554 0.75050 1.05759 1.02404 1.86502 1.24660 1.32547 1.83349 1.24101 0.92683 0.81223 0.71143 1.90706 1.67979 1.37720 1.46583 1.22605 0.85817 0.99766 1.02247 0.80477 1.23036 0.94997 0.99397 0.95986 1.32397 1.09980 1.14892 1.16732 0.77759 1.05903 0.73060 0.76230 0.76720 1.93531 1.61328 1.87061 1.54098 1.93585 1.80188 1.42778 1.81004 1.85660 1.59247 1.51551 1.65565 1.18148 1.08104 0.83083 0.90156 1.20350 0.98314 0.89934 0.99335 1.21614 1.03519 1.05619 0.90680 1.21531 0.97449 0.99164 0.93305 1.21792 0.94734 0.97293 0.95988 1.21346 1.00254 0.91859 1.00638 1.20475 0.99566 0.96880 0.93418 1.25973 0.91092 0.93604 1.13410 1.86643 1.29224 1.54165 1.65728 0.93678 0.86536 0.79551 0.72188 1.22754 0.93869 0.96449 1.00979 0.92174 0.92149 0.85013 0.83917 0.87969 0.86985 0.87244 0.91222 0.80503 0.81095 0.82939 0.87000 0.76450 1.23307 1.16716 0.89734 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.56 113.37 1.20 1.11 16 2 O -0.35 0.29 10.57 -51.44 -0.54 -0.25 16 3 C 0.46 0.60 7.48 71.24 0.53 1.14 16 4 O -0.54 -5.05 15.65 21.95 0.34 -4.70 16 5 C -0.08 0.55 4.26 -11.01 -0.05 0.50 16 6 H 0.18 -2.54 8.14 -2.39 -0.02 -2.56 16 7 C -0.10 0.70 5.96 31.12 0.19 0.89 16 8 C -0.63 2.77 2.79 31.12 0.09 2.86 16 9 H 0.21 -2.43 5.85 -2.39 -0.01 -2.44 16 10 S 2.58 19.96 4.95 -56.49 -0.28 19.68 16 11 O -0.96 -9.82 12.43 -118.57 -1.47 -11.30 16 12 O -0.98 -16.76 18.09 -118.57 -2.15 -18.91 16 13 O -0.66 -5.07 8.68 -61.50 -0.53 -5.61 16 14 C 0.05 0.14 4.84 22.51 0.11 0.25 16 15 C -0.08 0.40 4.61 -19.77 -0.09 0.31 16 16 C -0.16 1.69 7.88 71.24 0.56 2.25 16 17 C -0.10 0.96 9.69 22.25 0.22 1.18 16 18 C -0.08 0.71 10.04 22.28 0.22 0.93 16 19 C -0.12 0.42 8.66 22.25 0.19 0.61 16 20 C -0.10 -0.36 4.61 -19.77 -0.09 -0.45 16 21 C -0.13 -1.13 2.15 71.24 0.15 -0.97 16 22 O -0.55 -5.83 12.88 -148.98 -1.92 -7.75 16 23 Si 0.78 2.16 30.25 68.60 2.07 4.23 16 24 C -0.10 0.28 6.99 31.12 0.22 0.50 16 25 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 26 H 0.06 -0.12 8.13 -2.39 -0.02 -0.14 16 27 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 28 H 0.14 -2.06 5.87 -2.39 -0.01 -2.07 16 29 H 0.10 -0.39 7.27 -2.39 -0.02 -0.41 16 30 H 0.11 -1.74 3.59 -2.39 -0.01 -1.75 16 31 H 0.11 -1.61 8.07 -2.39 -0.02 -1.63 16 32 H 0.07 -0.55 7.48 -2.39 -0.02 -0.56 16 33 H 0.18 -3.00 8.06 -2.91 -0.02 -3.02 16 34 H 0.17 -2.60 8.06 -2.91 -0.02 -2.63 16 35 H 0.15 -1.00 4.86 -2.91 -0.01 -1.01 16 36 H 0.11 1.48 4.73 -2.38 -0.01 1.47 16 37 H 0.39 0.78 8.70 -74.05 -0.64 0.13 16 38 H -0.30 -3.36 7.11 99.48 0.71 -2.66 16 39 H -0.24 -0.08 6.68 99.48 0.67 0.59 16 40 H 0.08 0.20 7.39 -2.39 -0.02 0.19 16 41 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 Total: 0.00 -33.67 338.42 -0.58 -34.25 By element: Atomic # 1 Polarization: -21.22 SS G_CDS: 0.45 Total: -20.77 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 3.45 Total: 11.12 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -6.27 Total: -48.51 kcal Atomic # 14 Polarization: 2.16 SS G_CDS: 2.07 Total: 4.23 kcal Atomic # 16 Polarization: 19.96 SS G_CDS: -0.28 Total: 19.68 kcal Total: -33.67 -0.58 -34.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8157786_13206342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.575 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds