Wall clock time and date at job start Mon Mar 8 2021 13:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38125 * 120.02789 * 2 1 4 4 C 1.38293 * 120.05703 * 180.02562 * 3 2 1 5 5 C 1.38240 * 120.10995 * 0.24910 * 4 3 2 6 6 C 1.38175 * 120.05792 * 359.44979 * 5 4 3 7 7 C 1.50691 * 120.03026 * 180.29755 * 6 5 4 8 8 O 1.42904 * 109.46980 * 255.55615 * 7 6 5 9 9 Si 1.86297 * 109.47562 * 15.55836 * 7 6 5 10 10 H 1.48499 * 109.46891 * 59.99855 * 9 7 6 11 11 H 1.48492 * 109.47341 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47192 * 300.00374 * 9 7 6 13 13 C 1.38715 * 119.93909 * 0.57356 * 6 5 4 14 14 O 1.35893 * 120.05511 * 179.72686 * 13 6 5 15 15 S 1.52202 * 114.00143 * 83.36468 * 14 13 6 16 16 O 1.42105 * 104.27449 * 193.42030 * 15 14 13 17 17 O 1.42094 * 104.27673 * 321.27576 * 15 14 13 18 18 C 1.81394 * 104.45142 * 77.35122 * 15 14 13 19 19 C 1.52998 * 109.47352 * 182.13280 * 18 15 14 20 20 C 1.52998 * 109.47071 * 179.97438 * 19 18 15 21 21 Si 1.86305 * 109.46879 * 179.97438 * 20 19 18 22 22 C 1.86296 * 109.47199 * 59.99859 * 21 20 19 23 23 C 1.86303 * 109.46907 * 179.97438 * 21 20 19 24 24 C 1.86295 * 109.46909 * 299.99667 * 21 20 19 25 25 H 1.09000 * 109.47130 * 83.42578 * 1 2 3 26 26 H 1.09005 * 109.46975 * 203.42898 * 1 2 3 27 27 H 1.09004 * 109.46754 * 323.42324 * 1 2 3 28 28 H 1.08004 * 119.97061 * 359.97186 * 3 2 1 29 29 H 1.07995 * 119.94355 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.97394 * 179.72596 * 5 4 3 31 31 H 1.09008 * 109.47407 * 135.56153 * 7 6 5 32 32 H 0.96703 * 114.00009 * 55.06775 * 8 7 6 33 33 H 1.09008 * 109.46912 * 302.13302 * 18 15 14 34 34 H 1.09002 * 109.47373 * 62.12481 * 18 15 14 35 35 H 1.09006 * 109.46634 * 299.99728 * 19 18 15 36 36 H 1.08996 * 109.47125 * 59.99301 * 19 18 15 37 37 H 1.08997 * 109.47409 * 299.99556 * 20 19 18 38 38 H 1.08996 * 109.47678 * 59.99687 * 20 19 18 39 39 H 1.08993 * 109.47389 * 59.99929 * 22 21 20 40 40 H 1.09007 * 109.46915 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47143 * 299.99434 * 22 21 20 42 42 H 1.08999 * 109.47003 * 60.00343 * 23 21 20 43 43 H 1.09007 * 109.47109 * 179.97438 * 23 21 20 44 44 H 1.08993 * 109.47019 * 299.99665 * 23 21 20 45 45 H 1.09001 * 109.47523 * 60.00511 * 24 21 20 46 46 H 1.09007 * 109.46991 * 180.02562 * 24 21 20 47 47 H 1.08999 * 109.47745 * 300.00113 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2752 0.0011 -0.0063 6 6 3.5885 -1.1979 0.0000 7 6 4.3458 -2.5007 0.0005 8 8 4.2892 -3.0851 -1.3023 9 14 6.1227 -2.1861 0.4633 10 1 6.1815 -1.5788 1.8172 11 1 6.8691 -3.4698 0.4632 12 1 6.7341 -1.2585 -0.5222 13 6 2.2013 -1.2013 0.0000 14 8 1.5236 -2.3791 0.0006 15 16 1.3541 -2.9952 1.3820 16 8 0.9254 -4.3250 1.1224 17 8 2.5900 -2.7382 2.0343 18 6 0.0190 -2.0337 2.1458 19 6 -0.2126 -2.5284 3.5749 20 6 -1.3383 -1.7169 4.2193 21 14 -1.6208 -2.3198 5.9593 22 6 -0.0576 -2.1098 6.9508 23 6 -2.9909 -1.3312 6.7443 24 6 -2.0959 -4.1208 5.9230 25 1 -0.3633 0.1177 -1.0209 26 1 -0.3633 -0.9430 0.4086 27 1 -0.3633 0.8253 0.6124 28 1 1.6581 2.1312 -0.0005 29 1 4.1197 2.1326 -0.0010 30 1 5.3552 0.0042 -0.0112 31 1 3.8970 -3.1816 0.7239 32 1 4.6024 -2.5033 -2.0084 33 1 0.2964 -0.9797 2.1666 34 1 -0.8955 -2.1573 1.5657 35 1 -0.4900 -3.5824 3.5541 36 1 0.7020 -2.4048 4.1549 37 1 -1.0605 -0.6631 4.2402 38 1 -2.2529 -1.8401 3.6395 39 1 0.2203 -1.0561 6.9721 40 1 -0.2231 -2.4621 7.9690 41 1 0.7443 -2.6880 6.4918 42 1 -3.9056 -1.4537 6.1643 43 1 -3.1566 -1.6842 7.7622 44 1 -2.7125 -0.2776 6.7656 45 1 -1.2940 -4.6990 5.4639 46 1 -2.2617 -4.4735 6.9410 47 1 -3.0105 -4.2438 5.3429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8157786_14927650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:56:37 Heat of formation + Delta-G solvation = -153.195173 kcal Electronic energy + Delta-G solvation = -27948.307101 eV Core-core repulsion = 24154.704821 eV Total energy + Delta-G solvation = -3793.602280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.127 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.54500 -39.44220 -38.28594 -37.82153 -37.12863 -36.16564 -34.21838 -31.99249 -29.82316 -28.96695 -28.48461 -28.46368 -28.01973 -26.98554 -24.19537 -23.09621 -22.38179 -21.43755 -19.72736 -18.77063 -18.67178 -17.99154 -17.08014 -16.92854 -16.58725 -16.16989 -16.06830 -15.52481 -15.23761 -15.00829 -14.74527 -14.58926 -14.37476 -14.23965 -14.21880 -14.07664 -13.89346 -13.76203 -13.66190 -13.60290 -13.33645 -13.30548 -13.22880 -13.21023 -13.14474 -13.08675 -12.99738 -12.77628 -12.64679 -12.10683 -12.03730 -12.03201 -11.79298 -11.61522 -10.89027 -10.85585 -10.62557 -10.34460 -10.05225 -9.98543 -1.08449 -0.08222 -0.04642 1.03848 1.16711 1.42053 1.59380 1.67113 1.79063 1.80472 1.97047 2.24646 2.50962 2.59229 2.85426 3.26897 3.39160 3.40880 3.50550 3.59916 3.67127 3.83437 3.92033 3.95894 4.00075 4.17806 4.27370 4.36290 4.44146 4.47382 4.58587 4.66013 4.66977 4.68413 4.70931 4.71502 4.72775 4.74397 4.81049 4.85178 4.88287 4.99652 5.05456 5.13994 5.19526 5.41683 5.49983 5.52239 5.60242 6.57700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.103 4.103 4 C -0.087 4.087 5 C -0.120 4.120 6 C -0.081 4.081 7 C -0.111 4.111 8 O -0.531 6.531 9 Si 0.959 3.041 10 H -0.242 1.242 11 H -0.248 1.248 12 H -0.251 1.251 13 C 0.083 3.917 14 O -0.650 6.650 15 S 2.578 3.422 16 O -0.920 6.920 17 O -0.948 6.948 18 C -0.652 4.652 19 C -0.102 4.102 20 C -0.405 4.405 21 Si 1.002 2.998 22 C -0.453 4.453 23 C -0.449 4.449 24 C -0.454 4.454 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.375 0.625 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 6.861 1.113 7.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.138 4.138 6 C -0.084 4.084 7 C -0.221 4.221 8 O -0.336 6.336 9 Si 0.780 3.220 10 H -0.165 1.165 11 H -0.171 1.171 12 H -0.175 1.175 13 C 0.041 3.959 14 O -0.609 6.609 15 S 2.675 3.325 16 O -0.918 6.918 17 O -0.946 6.946 18 C -0.779 4.779 19 C -0.140 4.140 20 C -0.491 4.491 21 Si 1.199 2.801 22 C -0.561 4.561 23 C -0.557 4.557 24 C -0.561 4.561 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.160 0.840 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.222 0.778 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.465 5.880 1.388 6.060 hybrid contribution -0.975 0.739 -0.345 1.271 sum -1.439 6.619 1.043 6.854 Atomic orbital electron populations 1.21281 0.89858 1.03942 1.04563 1.20097 0.97122 0.91488 0.99800 1.21043 0.94247 0.97073 0.99768 1.21356 0.94237 0.98429 0.96544 1.21136 1.00709 0.91331 1.00640 1.20510 0.92395 0.97056 0.98428 1.25648 1.11942 0.94700 0.89778 1.86612 1.88875 1.43044 1.15088 0.85559 0.73925 0.81180 0.81351 1.16465 1.17119 1.17504 1.17646 0.89308 0.80462 1.08494 1.85722 1.76067 1.42316 1.56750 1.06067 0.76726 0.75988 0.73741 1.93672 1.83700 1.32593 1.81855 1.93581 1.39747 1.85456 1.75851 1.31187 1.20368 1.16273 1.10027 1.20998 1.01236 1.00903 0.90883 1.26159 1.00627 1.04510 1.17797 0.79325 0.67356 0.67297 0.66142 1.26175 1.15911 1.04753 1.09229 1.26103 1.13169 1.08957 1.07426 1.26182 1.05673 1.19634 1.04652 0.89240 0.91007 0.89747 0.84023 0.84184 0.84344 0.84756 0.77805 0.84217 0.83995 0.89988 0.89789 0.90028 0.89986 0.91180 0.91105 0.91091 0.91249 0.91140 0.91266 0.91093 0.91094 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.37 8.65 36.00 0.31 0.68 16 2 C -0.08 0.04 5.37 -104.47 -0.56 -0.52 16 3 C -0.10 0.21 9.72 -39.60 -0.39 -0.17 16 4 C -0.09 0.17 10.04 -39.56 -0.40 -0.23 16 5 C -0.12 0.03 8.66 -39.60 -0.34 -0.31 16 6 C -0.08 -0.17 4.51 -104.47 -0.47 -0.64 16 7 C -0.11 -0.34 2.13 36.00 0.08 -0.26 16 8 O -0.53 -1.57 12.84 -35.23 -0.45 -2.02 16 9 Si 0.96 1.19 25.59 -169.99 -4.35 -3.16 16 10 H -0.24 -0.39 7.11 56.52 0.40 0.02 16 11 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 12 H -0.25 0.11 6.71 56.52 0.38 0.49 16 13 C 0.08 0.17 4.86 -39.21 -0.19 -0.02 16 14 O -0.65 -2.04 8.74 -51.73 -0.45 -2.49 16 15 S 2.58 7.26 4.84 -107.50 -0.52 6.74 16 16 O -0.92 -5.79 18.09 -67.04 -1.21 -7.00 16 17 O -0.95 -3.74 13.38 -67.04 -0.90 -4.63 16 18 C -0.65 0.85 4.04 37.16 0.15 1.00 16 19 C -0.10 0.15 4.59 -26.73 -0.12 0.02 16 20 C -0.41 1.13 4.45 37.16 0.17 1.30 16 21 Si 1.00 -3.09 12.19 -169.99 -2.07 -5.16 16 22 C -0.45 0.78 8.65 101.05 0.87 1.65 16 23 C -0.45 0.91 8.65 101.05 0.87 1.78 16 24 C -0.45 0.70 8.65 101.05 0.87 1.57 16 25 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 26 H 0.07 -0.21 3.58 -51.93 -0.19 -0.40 16 27 H 0.08 -0.39 8.13 -51.93 -0.42 -0.81 16 28 H 0.14 -0.66 8.06 -52.48 -0.42 -1.08 16 29 H 0.14 -0.64 8.06 -52.49 -0.42 -1.06 16 30 H 0.14 -0.26 4.90 -52.49 -0.26 -0.51 16 31 H 0.14 0.60 4.74 -51.92 -0.25 0.35 16 32 H 0.38 -0.48 8.76 45.56 0.40 -0.09 16 33 H 0.14 -0.43 6.15 -51.92 -0.32 -0.75 16 34 H 0.14 -0.46 7.12 -51.92 -0.37 -0.83 16 35 H 0.08 -0.16 7.79 -51.93 -0.40 -0.56 16 36 H 0.08 -0.19 7.79 -51.93 -0.40 -0.59 16 37 H 0.08 -0.28 7.96 -51.93 -0.41 -0.70 16 38 H 0.08 -0.27 7.96 -51.93 -0.41 -0.69 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.11 7.96 -51.92 -0.41 -0.52 16 41 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 42 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 43 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 44 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 45 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 46 H 0.07 -0.10 7.96 -51.92 -0.41 -0.51 16 47 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 LS Contribution 380.06 15.07 5.73 5.73 Total: 0.00 -8.79 380.06 -10.20 -18.99 By element: Atomic # 1 Polarization: -6.03 SS G_CDS: -6.83 Total: -12.86 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 0.86 Total: 5.86 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -3.01 Total: -16.15 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -6.42 Total: -8.32 kcal Atomic # 16 Polarization: 7.26 SS G_CDS: -0.52 Total: 6.74 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -8.79 -10.20 -18.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8157786_14927650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.201 kcal (2) G-P(sol) polarization free energy of solvation -8.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds