Wall clock time and date at job start Mon Mar 8 2021 13:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38125 * 120.02789 * 2 1 4 4 C 1.38293 * 120.05703 * 180.02562 * 3 2 1 5 5 C 1.38240 * 120.10995 * 0.24910 * 4 3 2 6 6 C 1.38175 * 120.05792 * 359.44979 * 5 4 3 7 7 C 1.50691 * 120.03026 * 180.29755 * 6 5 4 8 8 O 1.42904 * 109.46980 * 255.55615 * 7 6 5 9 9 Si 1.86297 * 109.47562 * 15.55836 * 7 6 5 10 10 H 1.48499 * 109.46891 * 59.99855 * 9 7 6 11 11 H 1.48492 * 109.47341 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47192 * 300.00374 * 9 7 6 13 13 C 1.38715 * 119.93909 * 0.57356 * 6 5 4 14 14 O 1.35893 * 120.05511 * 179.72686 * 13 6 5 15 15 S 1.52202 * 114.00143 * 83.36468 * 14 13 6 16 16 O 1.42105 * 104.27449 * 193.42030 * 15 14 13 17 17 O 1.42094 * 104.27673 * 321.27576 * 15 14 13 18 18 C 1.81394 * 104.45142 * 77.35122 * 15 14 13 19 19 C 1.52998 * 109.47352 * 182.13280 * 18 15 14 20 20 C 1.52998 * 109.47071 * 179.97438 * 19 18 15 21 21 Si 1.86305 * 109.46879 * 179.97438 * 20 19 18 22 22 C 1.86296 * 109.47199 * 59.99859 * 21 20 19 23 23 C 1.86303 * 109.46907 * 179.97438 * 21 20 19 24 24 C 1.86295 * 109.46909 * 299.99667 * 21 20 19 25 25 H 1.09000 * 109.47130 * 83.42578 * 1 2 3 26 26 H 1.09005 * 109.46975 * 203.42898 * 1 2 3 27 27 H 1.09004 * 109.46754 * 323.42324 * 1 2 3 28 28 H 1.08004 * 119.97061 * 359.97186 * 3 2 1 29 29 H 1.07995 * 119.94355 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.97394 * 179.72596 * 5 4 3 31 31 H 1.09008 * 109.47407 * 135.56153 * 7 6 5 32 32 H 0.96703 * 114.00009 * 55.06775 * 8 7 6 33 33 H 1.09008 * 109.46912 * 302.13302 * 18 15 14 34 34 H 1.09002 * 109.47373 * 62.12481 * 18 15 14 35 35 H 1.09006 * 109.46634 * 299.99728 * 19 18 15 36 36 H 1.08996 * 109.47125 * 59.99301 * 19 18 15 37 37 H 1.08997 * 109.47409 * 299.99556 * 20 19 18 38 38 H 1.08996 * 109.47678 * 59.99687 * 20 19 18 39 39 H 1.08993 * 109.47389 * 59.99929 * 22 21 20 40 40 H 1.09007 * 109.46915 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47143 * 299.99434 * 22 21 20 42 42 H 1.08999 * 109.47003 * 60.00343 * 23 21 20 43 43 H 1.09007 * 109.47109 * 179.97438 * 23 21 20 44 44 H 1.08993 * 109.47019 * 299.99665 * 23 21 20 45 45 H 1.09001 * 109.47523 * 60.00511 * 24 21 20 46 46 H 1.09007 * 109.46991 * 180.02562 * 24 21 20 47 47 H 1.08999 * 109.47745 * 300.00113 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5811 1.1966 -0.0005 5 6 4.2752 0.0011 -0.0063 6 6 3.5885 -1.1979 0.0000 7 6 4.3458 -2.5007 0.0005 8 8 4.2892 -3.0851 -1.3023 9 14 6.1227 -2.1861 0.4633 10 1 6.1815 -1.5788 1.8172 11 1 6.8691 -3.4698 0.4632 12 1 6.7341 -1.2585 -0.5222 13 6 2.2013 -1.2013 0.0000 14 8 1.5236 -2.3791 0.0006 15 16 1.3541 -2.9952 1.3820 16 8 0.9254 -4.3250 1.1224 17 8 2.5900 -2.7382 2.0343 18 6 0.0190 -2.0337 2.1458 19 6 -0.2126 -2.5284 3.5749 20 6 -1.3383 -1.7169 4.2193 21 14 -1.6208 -2.3198 5.9593 22 6 -0.0576 -2.1098 6.9508 23 6 -2.9909 -1.3312 6.7443 24 6 -2.0959 -4.1208 5.9230 25 1 -0.3633 0.1177 -1.0209 26 1 -0.3633 -0.9430 0.4086 27 1 -0.3633 0.8253 0.6124 28 1 1.6581 2.1312 -0.0005 29 1 4.1197 2.1326 -0.0010 30 1 5.3552 0.0042 -0.0112 31 1 3.8970 -3.1816 0.7239 32 1 4.6024 -2.5033 -2.0084 33 1 0.2964 -0.9797 2.1666 34 1 -0.8955 -2.1573 1.5657 35 1 -0.4900 -3.5824 3.5541 36 1 0.7020 -2.4048 4.1549 37 1 -1.0605 -0.6631 4.2402 38 1 -2.2529 -1.8401 3.6395 39 1 0.2203 -1.0561 6.9721 40 1 -0.2231 -2.4621 7.9690 41 1 0.7443 -2.6880 6.4918 42 1 -3.9056 -1.4537 6.1643 43 1 -3.1566 -1.6842 7.7622 44 1 -2.7125 -0.2776 6.7656 45 1 -1.2940 -4.6990 5.4639 46 1 -2.2617 -4.4735 6.9410 47 1 -3.0105 -4.2438 5.3429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8157786_14927650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:56:36 Heat of formation + Delta-G solvation = -150.479141 kcal Electronic energy + Delta-G solvation = -27948.189325 eV Core-core repulsion = 24154.704821 eV Total energy + Delta-G solvation = -3793.484504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.127 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.54821 -39.42123 -38.49908 -37.94812 -37.34951 -36.04348 -34.09734 -31.90737 -29.67049 -28.80910 -28.31561 -28.30081 -27.89227 -26.97742 -24.16993 -22.94692 -22.31580 -21.43594 -19.83625 -18.89017 -18.72316 -18.09437 -17.06544 -16.89321 -16.56523 -16.17351 -16.10154 -15.58580 -15.08960 -14.90268 -14.64914 -14.59812 -14.31853 -14.15398 -14.05358 -13.97651 -13.84709 -13.68863 -13.57196 -13.50308 -13.44067 -13.34631 -13.16835 -13.07796 -13.07136 -12.98341 -12.90597 -12.66656 -12.53687 -12.20064 -12.04611 -11.83212 -11.74669 -11.66017 -10.71327 -10.68907 -10.46468 -10.44998 -9.96060 -9.87247 -1.16053 -0.00042 0.03967 0.96252 1.04717 1.31868 1.47710 1.85779 1.91086 2.00291 2.02188 2.36901 2.46070 2.72966 2.76621 3.30852 3.48054 3.53750 3.60957 3.61745 3.84256 3.92671 4.09611 4.12745 4.19173 4.36076 4.39293 4.54881 4.61767 4.68529 4.73235 4.76697 4.80696 4.83077 4.85815 4.87384 4.87680 4.88265 4.92458 5.07621 5.09410 5.13454 5.23792 5.28874 5.45228 5.59776 5.65946 5.67143 5.75735 6.60819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.100 4.100 4 C -0.081 4.081 5 C -0.130 4.130 6 C -0.104 4.104 7 C -0.129 4.129 8 O -0.553 6.553 9 Si 0.987 3.013 10 H -0.249 1.249 11 H -0.275 1.275 12 H -0.217 1.217 13 C 0.050 3.950 14 O -0.662 6.662 15 S 2.564 3.436 16 O -0.973 6.973 17 O -0.970 6.970 18 C -0.626 4.626 19 C -0.120 4.120 20 C -0.408 4.408 21 Si 1.069 2.931 22 C -0.473 4.473 23 C -0.461 4.461 24 C -0.477 4.477 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.175 0.825 29 H 0.172 0.828 30 H 0.151 0.849 31 H 0.109 0.891 32 H 0.390 0.610 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 10.291 0.963 10.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.117 4.117 4 C -0.100 4.100 5 C -0.148 4.148 6 C -0.107 4.107 7 C -0.237 4.237 8 O -0.360 6.360 9 Si 0.806 3.194 10 H -0.172 1.172 11 H -0.200 1.200 12 H -0.139 1.139 13 C 0.008 3.992 14 O -0.621 6.621 15 S 2.666 3.334 16 O -0.972 6.972 17 O -0.969 6.969 18 C -0.757 4.757 19 C -0.159 4.159 20 C -0.494 4.494 21 Si 1.261 2.739 22 C -0.579 4.579 23 C -0.568 4.568 24 C -0.582 4.582 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.130 0.870 28 H 0.193 0.807 29 H 0.189 0.811 30 H 0.168 0.832 31 H 0.127 0.873 32 H 0.239 0.761 33 H 0.183 0.817 34 H 0.183 0.817 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.244 9.284 1.212 9.445 hybrid contribution -0.764 -0.293 -0.266 0.861 sum -2.008 8.991 0.946 9.261 Atomic orbital electron populations 1.21439 0.88404 1.05048 1.05452 1.20419 0.98340 0.90917 0.98975 1.21493 0.94430 0.97646 0.98157 1.21782 0.94638 0.98869 0.94667 1.21354 1.01458 0.91194 1.00770 1.20584 0.92808 0.97183 1.00126 1.25829 1.13711 0.95057 0.89100 1.86551 1.89316 1.44280 1.15903 0.85200 0.72131 0.80360 0.81659 1.17191 1.20010 1.13923 1.18087 0.89731 0.80808 1.10565 1.85682 1.76390 1.43311 1.56674 1.06287 0.77503 0.75798 0.73782 1.93594 1.84441 1.36272 1.82863 1.93540 1.41660 1.85563 1.76116 1.31041 1.18622 1.16257 1.09788 1.21242 1.02317 1.01466 0.90850 1.26211 1.00412 1.05191 1.17572 0.78299 0.65350 0.64937 0.65306 1.26425 1.17129 1.04899 1.09451 1.26247 1.13773 1.09460 1.07311 1.26478 1.05649 1.21799 1.04317 0.88856 0.91137 0.86969 0.80750 0.81070 0.83175 0.87329 0.76054 0.81746 0.81652 0.90076 0.89372 0.88389 0.88746 0.90799 0.91593 0.91581 0.91052 0.91683 0.90850 0.91676 0.91562 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.09 8.65 71.23 0.62 1.71 16 2 C -0.08 0.20 5.37 -19.77 -0.11 0.09 16 3 C -0.10 0.68 9.72 22.26 0.22 0.90 16 4 C -0.08 0.51 10.04 22.28 0.22 0.74 16 5 C -0.13 0.16 8.66 22.26 0.19 0.35 16 6 C -0.10 -0.54 4.51 -19.77 -0.09 -0.63 16 7 C -0.13 -1.10 2.13 71.23 0.15 -0.95 16 8 O -0.55 -4.81 12.84 -148.98 -1.91 -6.72 16 9 Si 0.99 3.63 25.59 68.60 1.76 5.39 16 10 H -0.25 -1.07 7.11 99.48 0.71 -0.36 16 11 H -0.27 -2.06 7.11 99.48 0.71 -1.36 16 12 H -0.22 0.45 6.71 99.48 0.67 1.12 16 13 C 0.05 0.25 4.86 22.51 0.11 0.35 16 14 O -0.66 -5.59 8.74 -61.44 -0.54 -6.12 16 15 S 2.56 20.38 4.84 -56.49 -0.27 20.11 16 16 O -0.97 -15.83 18.09 -118.57 -2.15 -17.98 16 17 O -0.97 -10.55 13.38 -118.57 -1.59 -12.13 16 18 C -0.63 1.96 4.04 71.98 0.29 2.25 16 19 C -0.12 0.39 4.59 30.59 0.14 0.53 16 20 C -0.41 3.03 4.45 71.98 0.32 3.35 16 21 Si 1.07 -7.20 12.19 68.60 0.84 -6.37 16 22 C -0.47 1.54 8.65 113.37 0.98 2.52 16 23 C -0.46 2.29 8.65 113.37 0.98 3.27 16 24 C -0.48 1.15 8.65 113.37 0.98 2.13 16 25 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.07 -0.51 3.58 -2.38 -0.01 -0.52 16 27 H 0.11 -1.46 8.13 -2.38 -0.02 -1.48 16 28 H 0.18 -2.39 8.06 -2.91 -0.02 -2.41 16 29 H 0.17 -2.21 8.06 -2.91 -0.02 -2.23 16 30 H 0.15 -0.71 4.90 -2.91 -0.01 -0.72 16 31 H 0.11 1.43 4.74 -2.38 -0.01 1.42 16 32 H 0.39 -0.21 8.76 -74.06 -0.65 -0.86 16 33 H 0.16 -1.32 6.15 -2.39 -0.01 -1.34 16 34 H 0.17 -1.28 7.12 -2.39 -0.02 -1.30 16 35 H 0.08 -0.25 7.79 -2.38 -0.02 -0.27 16 36 H 0.09 -0.37 7.79 -2.39 -0.02 -0.39 16 37 H 0.10 -0.99 7.96 -2.39 -0.02 -1.01 16 38 H 0.09 -0.88 7.96 -2.39 -0.02 -0.89 16 39 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.06 -0.16 7.96 -2.38 -0.02 -0.18 16 41 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 42 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 43 H 0.06 -0.24 7.96 -2.38 -0.02 -0.26 16 44 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 45 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 46 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 47 H 0.07 -0.20 7.96 -2.39 -0.02 -0.21 16 Total: 0.00 -24.93 380.06 2.18 -22.75 By element: Atomic # 1 Polarization: -16.57 SS G_CDS: 1.04 Total: -15.53 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.01 Total: 16.61 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -6.18 Total: -42.96 kcal Atomic # 14 Polarization: -3.57 SS G_CDS: 2.59 Total: -0.98 kcal Atomic # 16 Polarization: 20.38 SS G_CDS: -0.27 Total: 20.11 kcal Total: -24.93 2.18 -22.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8157786_14927650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.733 kcal (2) G-P(sol) polarization free energy of solvation -24.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds