Wall clock time and date at job start Mon Mar 8 2021 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38127 * 120.02821 * 2 1 4 4 C 1.38281 * 120.05391 * 180.02562 * 3 2 1 5 5 C 1.38247 * 120.11506 * 359.97438 * 4 3 2 6 6 C 1.38164 * 120.05203 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.02718 * 180.02562 * 6 5 4 8 8 O 1.42902 * 109.47558 * 255.00499 * 7 6 5 9 9 Si 1.86301 * 109.46844 * 15.00183 * 7 6 5 10 10 H 1.48504 * 109.47301 * 60.00160 * 9 7 6 11 11 H 1.48506 * 109.46897 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47641 * 299.99702 * 9 7 6 13 13 C 1.38705 * 119.94663 * 359.74686 * 6 5 4 14 14 O 1.35905 * 120.05947 * 179.97438 * 13 6 5 15 15 S 1.52195 * 113.99834 * 85.17809 * 14 13 6 16 16 O 1.42100 * 106.40149 * 189.96676 * 15 14 13 17 17 O 1.42101 * 106.40188 * 322.88327 * 15 14 13 18 18 C 1.76197 * 107.21981 * 76.42762 * 15 14 13 19 19 C 1.38240 * 119.99677 * 261.64761 * 18 15 14 20 20 C 1.38236 * 119.99728 * 179.97438 * 19 18 15 21 21 C 1.38234 * 120.00176 * 359.97438 * 20 19 18 22 Xx 1.80996 * 120.00092 * 179.97438 * 21 20 19 23 22 F 7.83506 * 40.03573 * 76.88165 * 2 1 3 24 23 F 1.60999 * 90.00402 * 135.00199 * 22 21 20 25 24 F 1.61006 * 90.00151 * 315.00221 * 22 21 20 26 25 F 1.61004 * 90.00278 * 225.00506 * 22 21 20 27 26 F 1.60997 * 90.00087 * 45.00296 * 22 21 20 28 27 C 1.38234 * 120.00174 * 359.95735 * 21 20 19 29 28 C 1.38234 * 119.99680 * 359.85798 * 28 21 20 30 29 H 1.09006 * 109.47262 * 267.01701 * 1 2 3 31 30 H 1.09003 * 109.47024 * 27.01681 * 1 2 3 32 31 H 1.09000 * 109.47315 * 147.01396 * 1 2 3 33 32 H 1.07997 * 119.96966 * 359.97438 * 3 2 1 34 33 H 1.08000 * 119.94265 * 179.97438 * 4 3 2 35 34 H 1.08003 * 119.97181 * 179.97438 * 5 4 3 36 35 H 1.08995 * 109.47102 * 134.99993 * 7 6 5 37 36 H 0.96702 * 114.00019 * 59.99538 * 8 7 6 38 37 H 1.07997 * 120.00318 * 359.97438 * 19 18 15 39 38 H 1.08003 * 119.99992 * 179.97438 * 20 19 18 40 39 H 1.07998 * 120.00153 * 180.02562 * 28 21 20 41 40 H 1.08007 * 120.00432 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1959 0.0000 4 6 3.5810 1.1965 -0.0005 5 6 4.2752 0.0009 -0.0005 6 6 3.5884 -1.1979 0.0005 7 6 4.3457 -2.5008 0.0011 8 8 4.2832 -3.0888 -1.2998 9 14 6.1247 -2.1848 0.4549 10 1 6.1898 -1.5739 1.8069 11 1 6.8709 -3.4688 0.4561 12 1 6.7317 -1.2601 -0.5359 13 6 2.2014 -1.2013 0.0069 14 8 1.5235 -2.3792 0.0075 15 16 1.3224 -2.9770 1.3926 16 8 0.8190 -4.2908 1.1933 17 8 2.5091 -2.7022 2.1244 18 6 0.0337 -2.0635 2.1729 19 6 0.3444 -1.0516 3.0621 20 6 -0.6667 -0.3345 3.6739 21 6 -1.9885 -0.6289 3.3963 22 9 -4.4919 1.1439 4.9085 23 9 -4.0757 0.4388 2.7863 24 9 -2.5490 0.1805 5.6097 25 9 -4.1015 -1.0610 4.4994 26 9 -2.5232 1.6802 3.8966 27 6 -2.2992 -1.6397 2.5060 28 6 -1.2881 -2.3543 1.8913 29 1 -0.3634 -0.0535 1.0263 30 1 -0.3633 0.9155 -0.4668 31 1 -0.3634 -0.8620 -0.5595 32 1 1.6582 2.1311 -0.0004 33 1 4.1197 2.1326 -0.0010 34 1 5.3552 0.0041 -0.0014 35 1 3.9003 -3.1796 0.7284 36 1 4.6626 -2.5386 -1.9988 37 1 1.3771 -0.8214 3.2788 38 1 -0.4239 0.4557 4.3690 39 1 -3.3319 -1.8694 2.2888 40 1 -1.5308 -3.1444 1.1960 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8157786_8643202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:46:41 Heat of formation + Delta-G solvation = 306.848203 kcal Electronic energy + Delta-G solvation = -38151.527751 eV Core-core repulsion = 32196.240891 eV Total energy + Delta-G solvation = -5955.286860 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 402.056 amu Computer time = 26.98 seconds Orbital eigenvalues (eV) -44.45289 -44.33419 -44.22284 -44.15518 -43.69410 -42.64711 -41.44075 -39.50163 -38.81652 -37.88750 -37.43781 -34.25512 -33.28079 -33.01708 -31.95131 -28.34210 -27.06793 -24.90259 -24.82742 -24.14052 -22.33335 -21.80407 -20.57638 -19.40475 -19.00434 -18.36681 -17.60500 -17.47425 -16.76650 -16.67549 -16.43699 -16.35470 -16.10594 -15.81008 -15.65502 -15.54163 -15.21123 -14.96455 -14.87452 -14.73106 -14.67412 -14.60109 -14.48029 -14.37765 -14.34847 -14.22807 -14.06802 -13.98005 -13.85757 -13.77569 -13.67594 -13.67001 -13.59457 -13.50132 -13.23160 -13.03797 -12.91149 -12.76962 -12.53400 -12.34924 -12.12980 -11.95961 -11.94746 -11.67603 -11.66590 -11.45588 -11.12356 -10.49747 -10.01638 -9.90417 -5.33869 -4.87919 -3.51534 -1.61941 -1.27664 -0.81249 -0.02476 0.03921 0.90067 1.08945 1.34532 1.41283 1.55301 1.94011 2.11464 2.33514 2.35472 2.55391 2.62816 3.10940 3.18661 3.29271 3.49112 3.58657 3.63875 3.74400 3.84168 3.88739 3.93737 4.07317 4.15966 4.19058 4.32108 4.33579 4.45796 4.56736 4.58369 4.70898 4.86083 5.03933 5.08180 5.24369 5.31675 5.72522 6.65307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.100 4.100 4 C -0.073 4.073 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.119 4.119 8 O -0.549 6.549 9 Si 0.977 3.023 10 H -0.242 1.242 11 H -0.276 1.276 12 H -0.222 1.222 13 C 0.048 3.952 14 O -0.639 6.639 15 S 2.684 3.316 16 O -0.937 6.937 17 O -0.944 6.944 18 C -0.697 4.697 19 C 0.056 3.944 20 C -0.124 4.124 21 C 0.395 3.605 22 F -0.199 7.199 23 F -0.160 7.160 24 F -0.165 7.165 25 F -0.169 7.169 26 F -0.155 7.155 27 C -0.125 4.125 28 C 0.057 3.943 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.393 0.607 37 H 0.225 0.775 38 H 0.211 0.789 39 H 0.209 0.791 40 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 2.257 -6.567 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.092 4.092 5 C -0.142 4.142 6 C -0.099 4.099 7 C -0.228 4.228 8 O -0.356 6.356 9 Si 0.797 3.203 10 H -0.165 1.165 11 H -0.201 1.201 12 H -0.145 1.145 13 C 0.006 3.994 14 O -0.598 6.598 15 S 2.775 3.225 16 O -0.935 6.935 17 O -0.943 6.943 18 C -0.779 4.779 19 C 0.038 3.962 20 C -0.142 4.142 21 C 0.389 3.611 22 F -0.199 7.199 23 F -0.158 7.158 24 F -0.163 7.163 25 F -0.168 7.168 26 F -0.153 7.153 27 C -0.143 4.143 28 C 0.039 3.961 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.184 0.816 33 H 0.186 0.814 34 H 0.170 0.830 35 H 0.127 0.873 36 H 0.243 0.757 37 H 0.241 0.759 38 H 0.228 0.772 39 H 0.226 0.774 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 10.527 1.318 -6.279 12.328 hybrid contribution -2.279 0.967 0.700 2.573 sum 8.248 2.285 -5.579 10.216 Atomic orbital electron populations 1.21338 0.89327 1.06328 1.03548 1.20226 0.97538 0.91066 0.98694 1.21466 0.94533 0.97583 0.98201 1.21776 0.94411 0.99096 0.93869 1.21357 1.01559 0.91034 1.00261 1.20542 0.92399 0.97238 0.99686 1.25539 1.13240 0.94512 0.89504 1.86553 1.85354 1.47337 1.16404 0.85301 0.72399 0.80457 0.82111 1.16535 1.20096 1.14480 1.17927 0.89486 0.80155 1.11798 1.85725 1.75955 1.43652 1.54475 1.02694 0.73618 0.73719 0.72516 1.93681 1.81276 1.34457 1.84123 1.93624 1.43454 1.84646 1.72549 1.31936 1.16130 1.14931 1.14888 1.21675 0.99850 0.87061 0.87607 1.22314 0.83750 1.04533 1.03577 1.28006 0.61546 0.82890 0.88615 2.00000 1.99933 1.66584 1.53346 1.99920 1.97678 1.90315 1.27933 1.99922 1.90629 1.70536 1.55246 1.99922 1.97606 1.37288 1.81938 1.99920 1.88756 1.65070 1.61583 1.22306 1.06502 0.91534 0.93974 1.21640 0.85938 0.94660 0.93882 0.90412 0.88124 0.89661 0.81571 0.81383 0.83007 0.87263 0.75729 0.75875 0.77215 0.77396 0.76068 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 447. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.85 8.44 71.24 0.60 2.45 16 2 C -0.07 0.70 5.78 -19.77 -0.11 0.59 16 3 C -0.10 1.27 9.68 22.25 0.22 1.48 16 4 C -0.07 0.93 10.04 22.28 0.22 1.15 16 5 C -0.12 1.13 8.66 22.25 0.19 1.32 16 6 C -0.10 0.43 4.63 -19.77 -0.09 0.34 16 7 C -0.12 0.18 2.19 71.24 0.16 0.34 16 8 O -0.55 0.41 12.88 -148.98 -1.92 -1.51 16 9 Si 0.98 -3.90 25.49 68.60 1.75 -2.15 16 10 H -0.24 0.89 7.11 99.48 0.71 1.60 16 11 H -0.28 -0.19 7.11 99.48 0.71 0.51 16 12 H -0.22 1.84 6.73 99.48 0.67 2.51 16 13 C 0.05 -0.24 4.83 22.51 0.11 -0.13 16 14 O -0.64 2.19 8.76 -61.76 -0.54 1.65 16 15 S 2.68 -10.54 4.99 -56.49 -0.28 -10.83 16 16 O -0.94 -2.24 17.52 -118.78 -2.08 -4.32 16 17 O -0.94 2.11 13.01 -118.78 -1.54 0.57 16 18 C -0.70 7.55 3.62 22.27 0.08 7.63 16 19 C 0.06 -0.76 8.27 22.27 0.18 -0.57 16 20 C -0.12 1.29 8.25 22.27 0.18 1.48 16 21 C 0.39 -1.64 4.82 22.27 0.11 -1.54 16 22 F -0.20 -4.45 16.66 44.97 0.75 -3.70 16 23 F -0.16 -1.71 15.30 44.97 0.69 -1.03 16 24 F -0.16 -1.97 15.32 44.97 0.69 -1.28 16 25 F -0.17 -2.11 15.31 44.97 0.69 -1.42 16 26 F -0.15 -1.55 15.31 44.97 0.69 -0.86 16 27 C -0.13 1.23 8.62 22.27 0.19 1.42 16 28 C 0.06 -0.74 8.87 22.27 0.20 -0.54 16 29 H 0.08 -1.13 4.49 -2.38 -0.01 -1.14 16 30 H 0.10 -1.41 8.07 -2.39 -0.02 -1.43 16 31 H 0.08 -1.07 7.63 -2.39 -0.02 -1.09 16 32 H 0.17 -2.87 8.06 -2.91 -0.02 -2.89 16 33 H 0.17 -3.01 8.06 -2.91 -0.02 -3.04 16 34 H 0.15 -1.83 4.89 -2.91 -0.01 -1.84 16 35 H 0.11 0.08 5.04 -2.39 -0.01 0.07 16 36 H 0.39 -3.55 8.70 -74.06 -0.64 -4.19 16 37 H 0.22 -4.23 7.46 -2.91 -0.02 -4.25 16 38 H 0.21 -2.66 7.40 -2.91 -0.02 -2.69 16 39 H 0.21 -2.41 7.40 -2.91 -0.02 -2.43 16 40 H 0.22 -4.10 7.83 -2.91 -0.02 -4.12 16 Total: 0.00 -36.23 363.22 2.35 -33.88 By element: Atomic # 1 Polarization: -25.64 SS G_CDS: 1.23 Total: -24.41 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 2.24 Total: 15.41 kcal Atomic # 8 Polarization: 2.47 SS G_CDS: -6.09 Total: -3.62 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 3.50 Total: -8.28 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 1.75 Total: -2.15 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -0.28 Total: -10.83 kcal Total: -36.23 2.35 -33.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8157786_8643202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 340.724 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 304.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 306.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.98 seconds