Wall clock time and date at job start Mon Mar 8 2021 12:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 109.46826 * 2 1 4 4 C 1.86302 * 109.47055 * 240.00423 * 2 1 3 5 5 C 1.86293 * 109.47326 * 120.00343 * 2 1 3 6 6 C 1.52998 * 109.47156 * 60.00280 * 5 2 1 7 7 C 1.53001 * 109.46909 * 180.02562 * 6 5 2 8 8 S 1.81399 * 109.46959 * 179.97438 * 7 6 5 9 9 O 1.42105 * 110.54711 * 68.37376 * 8 7 6 10 10 O 1.42102 * 110.54345 * 291.61998 * 8 7 6 11 11 O 1.52205 * 104.45022 * 179.97438 * 8 7 6 12 12 C 1.35971 * 114.00160 * 75.95016 * 11 8 7 13 13 C 1.38607 * 120.04819 * 91.66670 * 12 11 8 14 14 C 1.50706 * 120.01047 * 0.02562 * 13 12 11 15 15 O 1.42896 * 109.47388 * 195.06451 * 14 13 12 16 16 Si 1.86299 * 109.46828 * 75.06422 * 14 13 12 17 17 H 1.48502 * 109.47014 * 180.02562 * 16 14 13 18 18 H 1.48499 * 109.47638 * 300.00169 * 16 14 13 19 19 H 1.48504 * 109.47160 * 60.00596 * 16 14 13 20 20 C 1.38225 * 119.98442 * 179.72986 * 13 12 11 21 21 C 1.38320 * 120.07819 * 0.29334 * 20 13 12 22 22 Cl 1.73598 * 119.94799 * 179.97438 * 21 20 13 23 23 C 1.38393 * 120.10045 * 0.02562 * 21 20 13 24 24 C 1.38289 * 120.01862 * 359.97438 * 23 21 20 25 25 F 1.35105 * 120.04267 * 179.97438 * 24 23 21 26 26 H 1.08997 * 109.46900 * 299.99139 * 1 2 3 27 27 H 1.08999 * 109.47502 * 60.00025 * 1 2 3 28 28 H 1.09005 * 109.46579 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47226 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47759 * 300.00081 * 3 2 1 31 31 H 1.09001 * 109.47477 * 60.00301 * 3 2 1 32 32 H 1.08996 * 109.46961 * 299.99863 * 4 2 1 33 33 H 1.09004 * 109.47550 * 59.99868 * 4 2 1 34 34 H 1.08999 * 109.47482 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47296 * 299.99393 * 5 2 1 36 36 H 1.09008 * 109.47077 * 180.02562 * 5 2 1 37 37 H 1.08992 * 109.47532 * 60.00016 * 6 5 2 38 38 H 1.08999 * 109.46985 * 299.99405 * 6 5 2 39 39 H 1.08997 * 109.47937 * 59.99755 * 7 6 5 40 40 H 1.09007 * 109.46885 * 299.99272 * 7 6 5 41 41 H 1.09000 * 109.46929 * 315.06859 * 14 13 12 42 42 H 0.96703 * 114.00012 * 61.78131 * 15 14 13 43 43 H 1.07997 * 119.96281 * 180.27652 * 20 13 12 44 44 H 1.08008 * 119.99071 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4841 -0.8783 1.5210 6 6 1.9742 -2.3208 1.5209 7 6 2.4837 -3.0419 2.7704 8 16 1.8785 -4.7519 2.7707 9 8 2.4911 -5.4979 1.7278 10 8 0.4711 -4.7828 2.9644 11 8 2.4468 -5.3557 4.0471 12 6 1.8026 -4.9642 5.1787 13 6 0.7450 -5.7135 5.6698 14 6 0.3085 -6.9635 4.9500 15 8 -0.9814 -7.3587 5.4210 16 14 1.5339 -8.3282 5.2768 17 1 1.1041 -9.5598 4.5670 18 1 2.8744 -7.9177 4.7873 19 1 1.6001 -8.5950 6.7361 20 6 0.0946 -5.3173 6.8233 21 6 0.4940 -4.1703 7.4853 22 17 -0.3256 -3.6756 8.9334 23 6 1.5453 -3.4161 6.9943 24 6 2.1989 -3.8086 5.8405 25 9 3.2249 -3.0724 5.3604 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7565 -0.0005 30 1 2.1206 2.2704 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9058 -1.5213 33 1 2.1207 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5215 35 1 2.1208 -0.3645 2.4110 36 1 3.5741 -0.8779 1.5212 37 1 2.3374 -2.8346 0.6310 38 1 0.8842 -2.3208 1.5210 39 1 2.1201 -2.5281 3.6603 40 1 3.5738 -3.0419 2.7708 41 1 0.2599 -6.7677 3.8788 42 1 -1.6763 -6.7060 5.2589 43 1 -0.7265 -5.9039 7.2081 44 1 1.8555 -2.5205 7.5123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8159124_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:15 Heat of formation + Delta-G solvation = -209.577012 kcal Electronic energy + Delta-G solvation = -30437.879809 eV Core-core repulsion = 25968.116480 eV Total energy + Delta-G solvation = -4469.763329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 384.063 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.65592 -42.59463 -39.96481 -38.43422 -38.18085 -37.48129 -37.26900 -36.05369 -32.90465 -31.54770 -29.80094 -28.61090 -28.48243 -28.44456 -27.61690 -25.03728 -23.50649 -23.18934 -21.85390 -19.95576 -19.54657 -19.07531 -18.93092 -18.05505 -17.78555 -17.27520 -17.00532 -16.82588 -16.37678 -16.15105 -15.79631 -15.54369 -15.02487 -14.80942 -14.57880 -14.39015 -14.28682 -14.22432 -14.13450 -14.13080 -13.87369 -13.72261 -13.67244 -13.43541 -13.34101 -13.31824 -13.22017 -13.20119 -13.15730 -13.10532 -12.76027 -12.40906 -12.18506 -12.15084 -12.06711 -11.97761 -11.79810 -11.47818 -10.90334 -10.87106 -10.64663 -10.25598 -10.15496 -1.37262 -0.61076 -0.59678 0.54542 0.73930 1.01012 1.48751 1.51133 1.65115 1.72090 1.77561 1.79119 1.96646 2.26355 2.37454 2.53692 2.65257 2.90846 3.21829 3.31026 3.37394 3.46170 3.52094 3.59970 3.84237 3.92561 4.01902 4.13888 4.26413 4.30901 4.44579 4.56116 4.56377 4.63163 4.65201 4.66451 4.69374 4.70108 4.71334 4.72306 4.82775 5.04336 5.19102 5.40915 5.48492 5.50479 6.32534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.002 2.998 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.406 4.406 6 C -0.101 4.101 7 C -0.641 4.641 8 S 2.567 3.433 9 O -0.914 6.914 10 O -0.944 6.944 11 O -0.653 6.653 12 C 0.037 3.963 13 C -0.047 4.047 14 C -0.097 4.097 15 O -0.528 6.528 16 Si 0.989 3.011 17 H -0.236 1.236 18 H -0.230 1.230 19 H -0.239 1.239 20 C -0.094 4.094 21 C 0.011 3.989 22 Cl -0.029 7.029 23 C -0.132 4.132 24 C 0.112 3.888 25 F -0.113 7.113 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.096 0.904 42 H 0.376 0.624 43 H 0.169 0.831 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 3.712 1.846 4.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.199 2.801 3 C -0.557 4.557 4 C -0.561 4.561 5 C -0.491 4.491 6 C -0.140 4.140 7 C -0.770 4.770 8 S 2.664 3.336 9 O -0.912 6.912 10 O -0.942 6.942 11 O -0.612 6.612 12 C -0.006 4.006 13 C -0.050 4.050 14 C -0.204 4.204 15 O -0.334 6.334 16 Si 0.802 3.198 17 H -0.158 1.158 18 H -0.152 1.152 19 H -0.162 1.162 20 C -0.112 4.112 21 C -0.017 4.017 22 Cl 0.000 7.000 23 C -0.152 4.152 24 C 0.090 3.910 25 F -0.091 7.091 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.114 0.886 42 H 0.225 0.775 43 H 0.186 0.814 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.085 1.844 2.088 2.786 hybrid contribution -0.076 1.938 -0.224 1.952 sum 0.009 3.782 1.863 4.216 Atomic orbital electron populations 1.26170 1.20647 1.04593 1.04619 0.79327 0.67281 0.67075 0.66433 1.26102 1.06268 1.18768 1.04522 1.26177 1.06408 1.08157 1.15359 1.26174 1.06398 1.00231 1.16333 1.21000 1.01619 0.97166 0.94182 1.30991 1.14063 1.23083 1.08841 1.06433 0.75062 0.77978 0.74133 1.93687 1.77402 1.67756 1.52346 1.93650 1.31077 1.86219 1.83259 1.85814 1.69378 1.76644 1.29323 1.17675 0.97213 0.96418 0.89304 1.20378 0.92701 0.96479 0.95431 1.25566 0.93386 1.01024 1.00399 1.86700 1.16252 1.47233 1.83186 0.84898 0.76027 0.76091 0.82735 1.15802 1.15197 1.16180 1.20958 1.01326 0.95567 0.93380 1.20796 0.94693 0.95245 0.90962 1.98452 1.77095 1.90637 1.33773 1.20981 0.96295 1.02663 0.95215 1.17432 0.88441 0.90123 0.95026 1.91606 1.55444 1.75196 1.86896 0.91160 0.91062 0.91138 0.91226 0.91122 0.91249 0.91116 0.91069 0.91111 0.90020 0.89897 0.89846 0.89897 0.84590 0.83789 0.88634 0.77466 0.81387 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.85 8.65 101.05 0.87 1.73 16 2 Si 1.00 -3.10 12.19 -169.99 -2.07 -5.17 16 3 C -0.45 0.87 8.65 101.05 0.87 1.75 16 4 C -0.45 0.76 8.65 101.05 0.87 1.64 16 5 C -0.41 1.02 4.45 37.16 0.17 1.19 16 6 C -0.10 0.15 4.59 -26.73 -0.12 0.03 16 7 C -0.64 0.70 4.61 37.16 0.17 0.87 16 8 S 2.57 4.70 4.93 -107.50 -0.53 4.17 16 9 O -0.91 -4.37 18.09 -67.04 -1.21 -5.59 16 10 O -0.94 -2.33 14.51 -67.03 -0.97 -3.30 16 11 O -0.65 -1.26 8.47 -51.97 -0.44 -1.70 16 12 C 0.04 0.04 4.41 -39.19 -0.17 -0.13 16 13 C -0.05 -0.02 3.94 -104.49 -0.41 -0.44 16 14 C -0.10 -0.09 2.36 36.01 0.09 -0.01 16 15 O -0.53 0.20 11.37 -35.23 -0.40 -0.20 16 16 Si 0.99 1.43 27.58 -169.99 -4.69 -3.26 16 17 H -0.24 -0.40 7.11 56.52 0.40 0.00 16 18 H -0.23 -0.42 7.07 56.52 0.40 -0.02 16 19 H -0.24 -0.31 7.11 56.52 0.40 0.09 16 20 C -0.09 0.11 9.05 -39.56 -0.36 -0.24 16 21 C 0.01 -0.02 6.32 -39.49 -0.25 -0.27 16 22 Cl -0.03 0.04 28.95 -51.86 -1.50 -1.46 16 23 C -0.13 0.25 9.80 -39.51 -0.39 -0.14 16 24 C 0.11 -0.06 6.40 -39.30 -0.25 -0.31 16 25 F -0.11 0.09 14.34 2.25 0.03 0.12 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 29 H 0.07 -0.13 7.96 -51.92 -0.41 -0.54 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 36 H 0.08 -0.24 7.96 -51.92 -0.41 -0.65 16 37 H 0.08 -0.18 7.79 -51.93 -0.40 -0.59 16 38 H 0.08 -0.21 7.79 -51.93 -0.40 -0.61 16 39 H 0.14 -0.33 5.88 -51.93 -0.31 -0.63 16 40 H 0.14 -0.35 8.14 -51.92 -0.42 -0.78 16 41 H 0.10 0.11 5.67 -51.93 -0.29 -0.19 16 42 H 0.38 -1.35 8.92 45.56 0.41 -0.94 16 43 H 0.17 -0.49 7.12 -52.49 -0.37 -0.87 16 44 H 0.17 -0.67 8.06 -52.48 -0.42 -1.09 16 LS Contribution 390.22 15.07 5.88 5.88 Total: 0.00 -6.23 390.22 -10.36 -16.60 By element: Atomic # 1 Polarization: -6.20 SS G_CDS: -5.55 Total: -11.75 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 1.09 Total: 5.66 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -3.03 Total: -10.79 kcal Atomic # 9 Polarization: 0.09 SS G_CDS: 0.03 Total: 0.12 kcal Atomic # 14 Polarization: -1.67 SS G_CDS: -6.76 Total: -8.43 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -0.53 Total: 4.17 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.50 Total: -1.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -6.23 -10.36 -16.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159124_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.980 kcal (2) G-P(sol) polarization free energy of solvation -6.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds