Wall clock time and date at job start Mon Mar 8 2021 12:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 109.46826 * 2 1 4 4 C 1.86302 * 109.47055 * 240.00423 * 2 1 3 5 5 C 1.86293 * 109.47326 * 120.00343 * 2 1 3 6 6 C 1.52998 * 109.47156 * 60.00280 * 5 2 1 7 7 C 1.53001 * 109.46909 * 180.02562 * 6 5 2 8 8 S 1.81399 * 109.46959 * 179.97438 * 7 6 5 9 9 O 1.42105 * 110.54711 * 68.37376 * 8 7 6 10 10 O 1.42102 * 110.54345 * 291.61998 * 8 7 6 11 11 O 1.52205 * 104.45022 * 179.97438 * 8 7 6 12 12 C 1.35971 * 114.00160 * 75.95016 * 11 8 7 13 13 C 1.38607 * 120.04819 * 91.66670 * 12 11 8 14 14 C 1.50706 * 120.01047 * 0.02562 * 13 12 11 15 15 O 1.42896 * 109.47388 * 195.06451 * 14 13 12 16 16 Si 1.86299 * 109.46828 * 75.06422 * 14 13 12 17 17 H 1.48502 * 109.47014 * 180.02562 * 16 14 13 18 18 H 1.48499 * 109.47638 * 300.00169 * 16 14 13 19 19 H 1.48504 * 109.47160 * 60.00596 * 16 14 13 20 20 C 1.38225 * 119.98442 * 179.72986 * 13 12 11 21 21 C 1.38320 * 120.07819 * 0.29334 * 20 13 12 22 22 Cl 1.73598 * 119.94799 * 179.97438 * 21 20 13 23 23 C 1.38393 * 120.10045 * 0.02562 * 21 20 13 24 24 C 1.38289 * 120.01862 * 359.97438 * 23 21 20 25 25 F 1.35105 * 120.04267 * 179.97438 * 24 23 21 26 26 H 1.08997 * 109.46900 * 299.99139 * 1 2 3 27 27 H 1.08999 * 109.47502 * 60.00025 * 1 2 3 28 28 H 1.09005 * 109.46579 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47226 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47759 * 300.00081 * 3 2 1 31 31 H 1.09001 * 109.47477 * 60.00301 * 3 2 1 32 32 H 1.08996 * 109.46961 * 299.99863 * 4 2 1 33 33 H 1.09004 * 109.47550 * 59.99868 * 4 2 1 34 34 H 1.08999 * 109.47482 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47296 * 299.99393 * 5 2 1 36 36 H 1.09008 * 109.47077 * 180.02562 * 5 2 1 37 37 H 1.08992 * 109.47532 * 60.00016 * 6 5 2 38 38 H 1.08999 * 109.46985 * 299.99405 * 6 5 2 39 39 H 1.08997 * 109.47937 * 59.99755 * 7 6 5 40 40 H 1.09007 * 109.46885 * 299.99272 * 7 6 5 41 41 H 1.09000 * 109.46929 * 315.06859 * 14 13 12 42 42 H 0.96703 * 114.00012 * 61.78131 * 15 14 13 43 43 H 1.07997 * 119.96281 * 180.27652 * 20 13 12 44 44 H 1.08008 * 119.99071 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4841 -0.8783 1.5210 6 6 1.9742 -2.3208 1.5209 7 6 2.4837 -3.0419 2.7704 8 16 1.8785 -4.7519 2.7707 9 8 2.4911 -5.4979 1.7278 10 8 0.4711 -4.7828 2.9644 11 8 2.4468 -5.3557 4.0471 12 6 1.8026 -4.9642 5.1787 13 6 0.7450 -5.7135 5.6698 14 6 0.3085 -6.9635 4.9500 15 8 -0.9814 -7.3587 5.4210 16 14 1.5339 -8.3282 5.2768 17 1 1.1041 -9.5598 4.5670 18 1 2.8744 -7.9177 4.7873 19 1 1.6001 -8.5950 6.7361 20 6 0.0946 -5.3173 6.8233 21 6 0.4940 -4.1703 7.4853 22 17 -0.3256 -3.6756 8.9334 23 6 1.5453 -3.4161 6.9943 24 6 2.1989 -3.8086 5.8405 25 9 3.2249 -3.0724 5.3604 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7565 -0.0005 30 1 2.1206 2.2704 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9058 -1.5213 33 1 2.1207 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5215 35 1 2.1208 -0.3645 2.4110 36 1 3.5741 -0.8779 1.5212 37 1 2.3374 -2.8346 0.6310 38 1 0.8842 -2.3208 1.5210 39 1 2.1201 -2.5281 3.6603 40 1 3.5738 -3.0419 2.7708 41 1 0.2599 -6.7677 3.8788 42 1 -1.6763 -6.7060 5.2589 43 1 -0.7265 -5.9039 7.2081 44 1 1.8555 -2.5205 7.5123 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8159124_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:14 Heat of formation + Delta-G solvation = -202.982761 kcal Electronic energy + Delta-G solvation = -30437.593861 eV Core-core repulsion = 25968.116480 eV Total energy + Delta-G solvation = -4469.477381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 384.063 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.56611 -42.59492 -39.92252 -38.57630 -38.12341 -37.51830 -37.29275 -35.91361 -32.82690 -31.47135 -29.63761 -28.46299 -28.31083 -28.27475 -27.57512 -24.99397 -23.45549 -23.05871 -21.81895 -19.98946 -19.54702 -19.08326 -18.91189 -18.02047 -17.79270 -17.19696 -16.96479 -16.75091 -16.41634 -16.06618 -15.78147 -15.52460 -14.98218 -14.71817 -14.50222 -14.33256 -14.17407 -14.14507 -14.03717 -13.98160 -13.84511 -13.62546 -13.57858 -13.50456 -13.45296 -13.15879 -13.13701 -13.06203 -13.00465 -12.98794 -12.72100 -12.31577 -12.28752 -12.25105 -11.93040 -11.86260 -11.77121 -11.46386 -10.72242 -10.69165 -10.47108 -10.16863 -10.09626 -1.39355 -0.58255 -0.50080 0.61690 0.74496 0.94563 1.36062 1.39058 1.70584 1.88596 1.90653 1.99975 2.00594 2.27095 2.39064 2.60033 2.71823 2.98444 3.28127 3.37682 3.48266 3.57063 3.64837 3.71184 3.91059 4.03866 4.11332 4.31024 4.32898 4.40217 4.58720 4.68167 4.72992 4.75896 4.81253 4.82857 4.86064 4.86354 4.87334 4.87949 5.04948 5.13442 5.43027 5.58979 5.65928 5.66855 6.52608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.471 4.471 2 Si 1.069 2.931 3 C -0.463 4.463 4 C -0.475 4.475 5 C -0.412 4.412 6 C -0.119 4.119 7 C -0.626 4.626 8 S 2.559 3.441 9 O -0.956 6.956 10 O -0.957 6.957 11 O -0.662 6.662 12 C 0.018 3.982 13 C -0.061 4.061 14 C -0.095 4.095 15 O -0.532 6.532 16 Si 0.989 3.011 17 H -0.245 1.245 18 H -0.242 1.242 19 H -0.235 1.235 20 C -0.088 4.088 21 C 0.011 3.989 22 Cl -0.025 7.025 23 C -0.121 4.121 24 C 0.109 3.891 25 F -0.112 7.112 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.088 0.912 42 H 0.391 0.609 43 H 0.183 0.817 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 5.197 3.151 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.577 4.577 2 Si 1.261 2.739 3 C -0.570 4.570 4 C -0.580 4.580 5 C -0.497 4.497 6 C -0.157 4.157 7 C -0.757 4.757 8 S 2.660 3.340 9 O -0.954 6.954 10 O -0.956 6.956 11 O -0.620 6.620 12 C -0.025 4.025 13 C -0.064 4.064 14 C -0.203 4.203 15 O -0.340 6.340 16 Si 0.804 3.196 17 H -0.167 1.167 18 H -0.165 1.165 19 H -0.157 1.157 20 C -0.106 4.106 21 C -0.017 4.017 22 Cl 0.004 6.996 23 C -0.140 4.140 24 C 0.087 3.913 25 F -0.090 7.090 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.106 0.894 42 H 0.242 0.758 43 H 0.201 0.799 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.097 3.296 3.384 4.725 hybrid contribution -0.042 1.527 -0.600 1.641 sum -0.140 4.823 2.784 5.571 Atomic orbital electron populations 1.26385 1.22200 1.04506 1.04591 0.78293 0.65378 0.65354 0.64831 1.26277 1.06409 1.19859 1.04441 1.26438 1.06582 1.08402 1.16600 1.26269 1.07018 0.99326 1.17131 1.21248 1.02511 0.97910 0.94079 1.30909 1.15013 1.19776 1.09995 1.06540 0.74748 0.79135 0.73581 1.93629 1.77930 1.69813 1.54007 1.93616 1.31825 1.86888 1.83222 1.85782 1.69374 1.77227 1.29655 1.17989 0.97825 0.97385 0.89310 1.20394 0.93248 0.96543 0.96200 1.25356 0.93780 1.00962 1.00159 1.86657 1.16216 1.48007 1.83085 0.84864 0.75867 0.76134 0.82724 1.16748 1.16519 1.15686 1.21120 1.01252 0.95662 0.92612 1.20847 0.94763 0.95146 0.90979 1.98459 1.77036 1.90555 1.33511 1.21238 0.95397 1.03019 0.94375 1.17451 0.88678 0.89770 0.95355 1.91605 1.55398 1.75021 1.86950 0.90884 0.91434 0.91270 0.91210 0.91537 0.91030 0.91379 0.91422 0.91134 0.88917 0.89156 0.89534 0.89007 0.82879 0.82241 0.89443 0.75808 0.79939 0.79213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.88 8.65 113.37 0.98 2.86 16 2 Si 1.07 -7.22 12.19 68.60 0.84 -6.39 16 3 C -0.46 2.06 8.65 113.37 0.98 3.04 16 4 C -0.47 1.47 8.65 113.37 0.98 2.45 16 5 C -0.41 2.66 4.45 71.98 0.32 2.98 16 6 C -0.12 0.42 4.59 30.59 0.14 0.56 16 7 C -0.63 1.69 4.61 71.98 0.33 2.03 16 8 S 2.56 12.26 4.93 -56.49 -0.28 11.98 16 9 O -0.96 -11.20 18.09 -118.57 -2.15 -13.34 16 10 O -0.96 -5.83 14.51 -118.57 -1.72 -7.55 16 11 O -0.66 -3.34 8.47 -62.31 -0.53 -3.87 16 12 C 0.02 0.04 4.41 22.53 0.10 0.14 16 13 C -0.06 -0.08 3.94 -19.78 -0.08 -0.16 16 14 C -0.09 -0.27 2.36 71.24 0.17 -0.10 16 15 O -0.53 0.25 11.37 -148.98 -1.69 -1.44 16 16 Si 0.99 4.32 27.58 68.60 1.89 6.22 16 17 H -0.24 -1.31 7.11 99.48 0.71 -0.60 16 18 H -0.24 -1.45 7.07 99.48 0.70 -0.75 16 19 H -0.23 -0.78 7.11 99.48 0.71 -0.07 16 20 C -0.09 0.27 9.05 22.29 0.20 0.47 16 21 C 0.01 -0.04 6.32 22.33 0.14 0.10 16 22 Cl -0.03 0.11 28.95 -2.72 -0.08 0.03 16 23 C -0.12 0.64 9.80 22.32 0.22 0.86 16 24 C 0.11 -0.20 6.40 22.45 0.14 -0.05 16 25 F -0.11 0.30 14.34 44.97 0.65 0.94 16 26 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 27 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 28 H 0.07 -0.25 7.79 -2.38 -0.02 -0.27 16 29 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 33 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 34 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 35 H 0.09 -0.76 7.96 -2.39 -0.02 -0.78 16 36 H 0.09 -0.68 7.96 -2.38 -0.02 -0.70 16 37 H 0.09 -0.37 7.79 -2.39 -0.02 -0.39 16 38 H 0.09 -0.50 7.79 -2.39 -0.02 -0.52 16 39 H 0.15 -0.94 5.88 -2.39 -0.01 -0.96 16 40 H 0.16 -0.93 8.14 -2.39 -0.02 -0.94 16 41 H 0.09 0.36 5.67 -2.39 -0.01 0.35 16 42 H 0.39 -2.82 8.92 -74.06 -0.66 -3.48 16 43 H 0.18 -1.23 7.12 -2.91 -0.02 -1.25 16 44 H 0.19 -2.00 8.06 -2.91 -0.02 -2.02 16 Total: 0.00 -15.44 390.22 2.68 -12.76 By element: Atomic # 1 Polarization: -15.65 SS G_CDS: 1.12 Total: -14.53 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 4.63 Total: 15.18 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -6.09 Total: -26.20 kcal Atomic # 9 Polarization: 0.30 SS G_CDS: 0.65 Total: 0.94 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.73 Total: -0.17 kcal Atomic # 16 Polarization: 12.26 SS G_CDS: -0.28 Total: 11.98 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.08 Total: 0.03 kcal Total: -15.44 2.68 -12.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159124_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.219 kcal (2) G-P(sol) polarization free energy of solvation -15.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds