Wall clock time and date at job start Mon Mar 8 2021 13:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47213 * 2 1 4 4 C 1.50699 * 109.47261 * 240.00011 * 2 1 3 5 5 C 1.38185 * 120.01076 * 103.69862 * 4 2 1 6 6 C 1.38361 * 120.08267 * 180.27869 * 5 4 2 7 7 Cl 1.73607 * 119.95063 * 179.77023 * 6 5 4 8 8 C 1.38355 * 120.10108 * 359.74331 * 6 5 4 9 9 C 1.38326 * 120.01678 * 359.97438 * 8 6 5 10 10 F 1.35098 * 120.04260 * 180.02562 * 9 8 6 11 11 C 1.38652 * 120.01235 * 283.44796 * 4 2 1 12 12 O 1.35976 * 120.04644 * 359.97438 * 11 4 2 13 13 S 1.52200 * 114.00010 * 94.86519 * 12 11 4 14 14 O 1.42098 * 104.27840 * 320.72783 * 13 12 11 15 15 O 1.42104 * 104.27937 * 192.86966 * 13 12 11 16 16 C 1.81400 * 104.44890 * 76.79719 * 13 12 11 17 17 H 1.09000 * 112.84666 * 40.00164 * 16 13 12 18 18 C 1.53779 * 113.61398 * 171.19313 * 16 13 12 19 19 C 1.53786 * 87.07691 * 139.98245 * 18 16 13 20 20 H 1.09003 * 113.61032 * 219.93357 * 19 18 16 21 21 O 1.42894 * 113.61318 * 89.12147 * 19 18 16 22 22 C 1.42904 * 114.00053 * 149.99745 * 21 19 18 23 23 C 1.50704 * 109.47056 * 179.97438 * 22 21 19 24 24 C 1.38229 * 119.99997 * 90.00046 * 23 22 21 25 25 C 1.38235 * 120.00227 * 179.97438 * 24 23 22 26 26 C 1.38240 * 120.00007 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99558 * 0.27375 * 26 25 24 28 28 C 1.38238 * 120.00375 * 359.51430 * 27 26 25 29 29 C 1.53773 * 87.08232 * 334.56809 * 19 18 16 30 30 H 0.96699 * 114.00147 * 59.99567 * 1 2 3 31 31 H 1.08999 * 109.47421 * 120.00520 * 2 1 3 32 32 H 1.48501 * 110.00076 * 60.00205 * 3 2 1 33 33 H 1.48501 * 110.00103 * 181.31880 * 3 2 1 34 34 H 1.08008 * 119.95765 * 0.04289 * 5 4 2 35 35 H 1.08002 * 119.99037 * 180.02562 * 8 6 5 36 36 H 1.09000 * 113.61411 * 25.43800 * 18 16 13 37 37 H 1.08997 * 113.69560 * 254.53889 * 18 16 13 38 38 H 1.09003 * 109.47145 * 59.99958 * 22 21 19 39 39 H 1.08998 * 109.47394 * 299.99379 * 22 21 19 40 40 H 1.08003 * 120.00160 * 359.97438 * 24 23 22 41 41 H 1.07998 * 120.00046 * 179.97438 * 25 24 23 42 42 H 1.07998 * 120.00074 * 179.97438 * 26 25 24 43 43 H 1.07996 * 119.99991 * 179.72330 * 27 26 25 44 44 H 1.07990 * 120.00247 * 180.27603 * 28 27 26 45 45 H 1.09004 * 113.61487 * 139.98380 * 29 19 18 46 46 H 1.08998 * 113.61819 * 270.88532 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.4289 0.0178 -2.2942 6 6 2.8852 -0.6326 -3.4270 7 17 3.5040 0.2860 -4.7638 8 6 2.8495 -2.0140 -3.4957 9 6 2.3577 -2.7473 -2.4309 10 9 2.3231 -4.0962 -2.4972 11 6 1.8993 -2.0951 -1.2935 12 8 1.4152 -2.8133 -0.2452 13 16 -0.0547 -3.1859 -0.3763 14 8 -0.6595 -2.0319 -0.9434 15 8 -0.4178 -3.6413 0.9199 16 6 -0.0695 -4.5596 -1.5610 17 1 0.7559 -5.2557 -1.4122 18 6 -1.4392 -5.2467 -1.6904 19 6 -1.1677 -5.3277 -3.2019 20 1 -2.0458 -5.1240 -3.8147 21 8 -0.4791 -6.5159 -3.5968 22 6 -0.7912 -6.9560 -4.9201 23 6 -0.0127 -8.2087 -5.2296 24 6 -0.5527 -9.4475 -4.9390 25 6 0.1611 -10.5967 -5.2233 26 6 1.4148 -10.5070 -5.7987 27 6 1.9570 -9.2680 -6.0846 28 6 1.2413 -8.1190 -5.8043 29 6 -0.2442 -4.1115 -3.0216 30 1 -0.3933 0.4417 -0.7650 31 1 1.7923 -0.5139 0.8899 32 1 1.5615 2.4679 1.2085 33 1 3.5346 1.7703 -0.0321 34 1 2.4581 1.0963 -2.2429 35 1 3.2065 -2.5199 -4.3806 36 1 -2.2780 -4.6006 -1.4315 37 1 -1.4886 -6.2203 -1.2028 38 1 -0.5244 -6.1771 -5.6345 39 1 -1.8587 -7.1643 -4.9914 40 1 -1.5324 -9.5177 -4.4898 41 1 -0.2607 -11.5645 -4.9958 42 1 1.9727 -11.4048 -6.0205 43 1 2.9383 -9.1977 -6.5300 44 1 1.6630 -7.1512 -6.0318 45 1 0.6725 -4.1685 -3.6085 46 1 -0.7563 -3.1550 -3.1266 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8159124_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:05:31 Heat of formation + Delta-G solvation = -115.237547 kcal Electronic energy + Delta-G solvation = -38809.258260 eV Core-core repulsion = 33508.442006 eV Total energy + Delta-G solvation = -5300.816254 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.062 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -50.58569 -42.46147 -40.78358 -39.96593 -39.83104 -38.45243 -37.99891 -37.38543 -37.20435 -37.00594 -32.94623 -32.71002 -31.83565 -31.42941 -27.61286 -27.36616 -27.05850 -26.50216 -24.92146 -23.52803 -23.48336 -22.31521 -22.23329 -21.03689 -19.97388 -19.28571 -19.21823 -18.82711 -18.33097 -17.81431 -17.69264 -17.51534 -16.99354 -16.91744 -16.64469 -16.45517 -16.26537 -16.16709 -15.81183 -15.60484 -15.57063 -15.30484 -14.89365 -14.64126 -14.48054 -14.32546 -14.20777 -14.16668 -14.09858 -13.91317 -13.70695 -13.65471 -13.54093 -13.32494 -13.24836 -13.19898 -12.97986 -12.53852 -12.36472 -12.17253 -12.11530 -12.09682 -12.02467 -11.88212 -11.75896 -11.23360 -10.58434 -10.52010 -10.37802 -10.07814 -9.86989 -9.81055 -5.08201 -1.27694 -0.51940 -0.46493 0.28527 0.45286 0.68791 0.84760 1.12824 1.61170 1.77897 1.93109 2.35223 2.40010 2.52515 2.64413 2.94198 3.02646 3.14540 3.16582 3.38640 3.44891 3.49020 3.57935 3.67813 3.79883 3.86908 3.89684 3.97416 4.10857 4.13031 4.19694 4.25732 4.32694 4.34784 4.38157 4.43399 4.45442 4.58076 4.62369 4.64127 4.65959 4.72477 4.74582 4.80349 4.88500 5.04110 5.10787 5.15515 5.50388 5.57689 5.60621 6.04769 6.18850 6.81008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.111 4.111 3 Si 0.801 3.199 4 C -0.061 4.061 5 C -0.091 4.091 6 C 0.014 3.986 7 Cl -0.020 7.020 8 C -0.114 4.114 9 C 0.101 3.899 10 F -0.115 7.115 11 C 0.042 3.958 12 O -0.672 6.672 13 S 2.588 3.412 14 O -0.919 6.919 15 O -0.975 6.975 16 C -0.630 4.630 17 H 0.157 0.843 18 C -0.116 4.116 19 C 0.083 3.917 20 H 0.115 0.885 21 O -0.375 6.375 22 C 0.100 3.900 23 C -0.108 4.108 24 C -0.113 4.113 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.135 4.135 28 C -0.110 4.110 29 C -0.137 4.137 30 H 0.400 0.600 31 H 0.100 0.900 32 H -0.291 1.291 33 H -0.267 1.267 34 H 0.188 0.812 35 H 0.189 0.811 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.105 0.895 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 3.169 -9.965 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.219 4.219 3 Si 0.703 3.297 4 C -0.064 4.064 5 C -0.109 4.109 6 C -0.014 4.014 7 Cl 0.010 6.990 8 C -0.133 4.133 9 C 0.079 3.921 10 F -0.093 7.093 11 C -0.001 4.001 12 O -0.630 6.630 13 S 2.687 3.313 14 O -0.917 6.917 15 O -0.974 6.974 16 C -0.739 4.739 17 H 0.175 0.825 18 C -0.155 4.155 19 C 0.024 3.976 20 H 0.132 0.868 21 O -0.295 6.295 22 C 0.025 3.975 23 C -0.108 4.108 24 C -0.131 4.131 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.152 4.152 28 C -0.128 4.128 29 C -0.176 4.176 30 H 0.251 0.749 31 H 0.118 0.882 32 H -0.219 1.219 33 H -0.193 1.193 34 H 0.204 0.796 35 H 0.206 0.794 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.123 0.877 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.081 3.789 -8.320 9.206 hybrid contribution 0.188 -1.960 0.467 2.023 sum 1.269 1.829 -7.853 8.163 Atomic orbital electron populations 1.86600 1.14888 1.82470 1.50152 1.25693 0.87405 1.13059 0.95698 0.93870 0.78067 0.72159 0.85641 1.20468 0.97181 0.90749 0.98048 1.21164 0.97576 1.02124 0.90083 1.20734 0.98126 0.91590 0.90988 1.98466 1.84758 1.72554 1.43256 1.21217 1.00376 0.92576 0.99173 1.17654 1.02319 0.78006 0.94104 1.91597 1.93814 1.27586 1.96315 1.18146 1.06742 0.90602 0.84630 1.85727 1.52861 1.73284 1.51144 1.05778 0.72883 0.76953 0.75731 1.93616 1.74482 1.43738 1.79912 1.93575 1.80257 1.84050 1.39483 1.32223 1.09238 1.18677 1.13801 0.82522 1.23031 0.91833 1.02600 0.98019 1.22839 0.95108 0.84713 0.94922 0.86755 1.87968 1.67540 1.42174 1.31793 1.21538 0.98525 0.93445 0.84037 1.19829 0.95963 0.94505 1.00515 1.21325 1.00713 0.92211 0.98875 1.21461 0.95376 0.99195 0.99334 1.21537 0.95926 0.98592 0.98250 1.21473 1.00799 0.92569 1.00408 1.21326 0.93801 0.99492 0.98179 1.23641 1.03750 1.00660 0.89525 0.74858 0.88229 1.21859 1.19317 0.79567 0.79354 0.86260 0.88639 0.90515 0.90774 0.85044 0.84561 0.84490 0.84346 0.84670 0.87702 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.98 9.74 -126.23 -1.23 -3.21 16 2 C -0.11 -0.19 2.37 71.24 0.17 -0.02 16 3 Si 0.80 -3.10 29.94 68.60 2.05 -1.05 16 4 C -0.06 0.01 4.89 -19.78 -0.10 -0.09 16 5 C -0.09 0.56 8.44 22.29 0.19 0.75 16 6 C 0.01 -0.09 6.32 22.33 0.14 0.05 16 7 Cl -0.02 0.14 28.95 -2.72 -0.08 0.06 16 8 C -0.11 0.69 9.80 22.32 0.22 0.91 16 9 C 0.10 -0.08 5.55 22.45 0.12 0.04 16 10 F -0.11 -0.07 12.15 44.97 0.55 0.47 16 11 C 0.04 0.14 4.68 22.53 0.11 0.24 16 12 O -0.67 -5.76 9.22 -62.37 -0.58 -6.33 16 13 S 2.59 20.76 5.21 -56.49 -0.29 20.47 16 14 O -0.92 -5.84 12.26 -115.05 -1.41 -7.25 16 15 O -0.98 -17.09 18.09 -118.57 -2.15 -19.23 16 16 C -0.63 -1.21 2.91 31.12 0.09 -1.12 16 17 H 0.16 0.46 7.17 -2.39 -0.02 0.44 16 18 C -0.12 0.06 7.50 31.12 0.23 0.29 16 19 C 0.08 -0.23 4.37 31.12 0.14 -0.10 16 20 H 0.11 -0.92 7.87 -2.39 -0.02 -0.94 16 21 O -0.38 -0.56 10.25 -148.98 -1.53 -2.09 16 22 C 0.10 -0.19 5.90 71.24 0.42 0.23 16 23 C -0.11 -0.20 5.51 -19.86 -0.11 -0.31 16 24 C -0.11 -0.24 9.70 22.27 0.22 -0.03 16 25 C -0.14 -0.23 10.05 22.27 0.22 -0.01 16 26 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 27 C -0.13 -0.15 10.05 22.27 0.22 0.08 16 28 C -0.11 -0.14 9.70 22.27 0.22 0.07 16 29 C -0.14 0.42 5.94 31.12 0.18 0.60 16 30 H 0.40 -1.92 8.61 -74.06 -0.64 -2.56 16 31 H 0.10 0.54 7.78 -2.39 -0.02 0.52 16 32 H -0.29 -1.14 7.11 99.48 0.71 -0.44 16 33 H -0.27 0.25 7.11 99.48 0.71 0.95 16 34 H 0.19 -2.31 5.17 -2.91 -0.02 -2.32 16 35 H 0.19 -2.09 8.06 -2.91 -0.02 -2.11 16 36 H 0.12 -0.48 8.10 -2.39 -0.02 -0.50 16 37 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.08 -0.41 8.08 -2.39 -0.02 -0.43 16 39 H 0.07 -0.34 8.09 -2.39 -0.02 -0.36 16 40 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 41 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 42 H 0.14 -0.33 8.06 -2.91 -0.02 -0.36 16 43 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 44 H 0.14 -0.32 8.06 -2.92 -0.02 -0.34 16 45 H 0.10 -0.42 5.76 -2.39 -0.01 -0.43 16 46 H 0.13 -0.77 7.31 -2.39 -0.02 -0.79 16 Total: 0.00 -25.61 404.18 -1.29 -26.90 By element: Atomic # 1 Polarization: -10.87 SS G_CDS: 0.46 Total: -10.41 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 2.91 Total: 1.66 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -6.89 Total: -38.12 kcal Atomic # 9 Polarization: -0.07 SS G_CDS: 0.55 Total: 0.47 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.05 Total: -1.05 kcal Atomic # 16 Polarization: 20.76 SS G_CDS: -0.29 Total: 20.47 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.06 kcal Total: -25.61 -1.29 -26.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159124_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.333 kcal (2) G-P(sol) polarization free energy of solvation -25.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds