Wall clock time and date at job start Mon Mar 8 2021 14:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 117.00158 * 2 1 4 4 O 1.20829 * 119.99622 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00246 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.85249 * 48.80389 * 5 3 2 7 7 C 1.53781 * 113.61667 * 179.97438 * 5 3 2 8 8 C 1.53773 * 87.08532 * 140.06595 * 7 5 3 9 9 H 1.09005 * 113.61618 * 89.19716 * 8 7 5 10 10 S 1.81399 * 113.61686 * 220.01968 * 8 7 5 11 11 O 1.42102 * 110.54122 * 69.37784 * 10 8 7 12 12 O 1.42092 * 110.54210 * 292.62542 * 10 8 7 13 13 O 1.52203 * 104.45090 * 181.00222 * 10 8 7 14 14 C 1.35979 * 114.00127 * 75.60677 * 13 10 8 15 15 C 1.38668 * 119.97839 * 81.06550 * 14 13 10 16 16 C 1.38534 * 119.94398 * 179.97438 * 15 14 13 17 17 O 1.35990 * 120.04203 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00411 * 359.97438 * 17 16 15 19 19 C 1.39135 * 119.91454 * 359.97438 * 16 15 14 20 20 O 1.36077 * 120.01679 * 180.02562 * 19 16 15 21 21 C 1.42907 * 116.99539 * 179.97438 * 20 19 16 22 22 C 1.38528 * 119.96343 * 0.02562 * 19 16 15 23 23 C 1.38235 * 120.05108 * 0.02562 * 22 19 16 24 24 C 1.50695 * 119.95362 * 179.97438 * 23 22 19 25 25 O 1.42902 * 109.47165 * 80.40488 * 24 23 22 26 26 Si 1.86299 * 109.47439 * 320.40462 * 24 23 22 27 27 C 1.53785 * 87.17344 * 334.61178 * 8 7 5 28 28 H 1.08996 * 109.47121 * 300.00706 * 1 2 3 29 29 H 1.09002 * 109.46727 * 60.00444 * 1 2 3 30 30 H 1.08997 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.09008 * 113.61566 * 25.51443 * 7 5 3 32 32 H 1.09008 * 113.61666 * 254.61527 * 7 5 3 33 33 H 1.08000 * 120.02366 * 359.70289 * 15 14 13 34 34 H 1.09000 * 109.47174 * 300.00204 * 18 17 16 35 35 H 1.09004 * 109.46636 * 59.99604 * 18 17 16 36 36 H 1.08996 * 109.47620 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47354 * 299.99964 * 21 20 19 38 38 H 1.08999 * 109.46853 * 60.00106 * 21 20 19 39 39 H 1.09002 * 109.46579 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.97482 * 179.97438 * 22 19 16 41 41 H 1.09003 * 109.47533 * 200.40840 * 24 23 22 42 42 H 0.96698 * 113.99919 * 60.00364 * 25 24 23 43 43 H 1.48501 * 109.99933 * 300.00071 * 26 24 23 44 44 H 1.48499 * 110.00083 * 61.31693 * 26 24 23 45 45 H 1.09000 * 113.61728 * 139.93661 * 27 8 7 46 46 H 1.09001 * 113.61130 * 270.84392 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0240 0.6362 -0.7549 7 6 4.1078 2.7142 -0.0001 8 6 5.1820 2.2270 0.9864 9 1 6.0820 1.8496 0.5008 10 16 5.5412 3.4112 2.3128 11 8 4.4391 3.5110 3.2042 12 8 6.1659 4.5742 1.7872 13 8 6.6307 2.7398 3.1367 14 6 7.8603 2.7697 2.5568 15 6 8.6447 3.9091 2.6539 16 6 9.8975 3.9385 2.0634 17 8 10.6682 5.0550 2.1569 18 6 10.1229 6.1612 2.8788 19 6 10.3662 2.8243 1.3744 20 8 11.5967 2.8508 0.7939 21 6 12.0136 1.6712 0.1033 22 6 9.5795 1.6880 1.2796 23 6 8.3292 1.6606 1.8686 24 6 7.4750 0.4235 1.7637 25 8 7.9045 -0.5354 2.7322 26 14 7.6401 -0.3022 0.0558 27 6 4.1946 1.1222 1.3978 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.4177 3.4406 0.4293 32 1 4.5100 3.0290 -0.9632 33 1 8.2774 4.7743 3.1858 34 1 9.1964 6.4838 2.4037 35 1 9.9185 5.8594 3.9060 36 1 10.8379 6.9839 2.8775 37 1 12.0357 0.8318 0.7983 38 1 11.3135 1.4562 -0.7040 39 1 13.0096 1.8261 -0.3116 40 1 9.9430 0.8232 0.7445 41 1 6.4330 0.6847 1.9482 42 1 7.8457 -0.2248 3.6461 43 1 7.1966 0.6853 -0.9607 44 1 9.0507 -0.6919 -0.1963 45 1 4.6667 0.1535 1.5618 46 1 3.5283 1.4124 2.2102 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8159502_13206342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:07:29 Heat of formation + Delta-G solvation = -210.622926 kcal Electronic energy + Delta-G solvation = -36863.899995 eV Core-core repulsion = 31816.833134 eV Total energy + Delta-G solvation = -5047.066861 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.109 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -42.80439 -41.95618 -41.14034 -39.83738 -39.69353 -38.55340 -38.39651 -37.36332 -37.29932 -36.92791 -32.52328 -31.29135 -30.04378 -29.01163 -28.39484 -27.92171 -27.45027 -26.42914 -24.28868 -23.65076 -23.09257 -21.81939 -20.94576 -20.09203 -19.74470 -19.39650 -18.84609 -18.77888 -18.39765 -18.06959 -17.67880 -17.51409 -17.29741 -17.02063 -16.87533 -16.40990 -16.32100 -16.06418 -15.97544 -15.72405 -15.51012 -14.84225 -14.78639 -14.53814 -14.20186 -14.12796 -14.11212 -13.92499 -13.90202 -13.64007 -13.57939 -13.45713 -13.32974 -13.26427 -13.16415 -12.89115 -12.85141 -12.61477 -12.36228 -12.31459 -12.14391 -12.13641 -11.82847 -11.71535 -11.61124 -11.38623 -11.27224 -10.19506 -9.18831 -5.17379 -1.26638 -0.27783 -0.20719 0.78453 0.97530 1.06130 1.32228 1.59993 1.63434 1.92567 1.99181 2.04443 2.30831 2.41981 2.67583 2.88948 2.99601 3.05915 3.29273 3.31492 3.50699 3.57707 3.65417 3.71269 3.75913 3.89777 3.92537 4.02449 4.07127 4.09334 4.14303 4.16738 4.17798 4.19487 4.23240 4.25552 4.33751 4.37984 4.44249 4.45722 4.55081 4.58415 4.69993 4.71985 4.75060 5.12358 5.31158 5.72859 6.20672 6.31346 6.64201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.468 3.532 4 O -0.498 6.498 5 C -0.096 4.096 6 H 0.141 0.859 7 C -0.083 4.083 8 C -0.665 4.665 9 H 0.155 0.845 10 S 2.594 3.406 11 O -0.912 6.912 12 O -0.942 6.942 13 O -0.653 6.653 14 C 0.075 3.925 15 C -0.144 4.144 16 C 0.128 3.872 17 O -0.294 6.294 18 C 0.016 3.984 19 C 0.128 3.872 20 O -0.294 6.294 21 C 0.019 3.981 22 C -0.158 4.158 23 C -0.114 4.114 24 C -0.093 4.093 25 O -0.525 6.525 26 Si 0.736 3.264 27 C -0.096 4.096 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.111 0.889 40 H 0.156 0.844 41 H 0.074 0.926 42 H 0.373 0.627 43 H -0.236 1.236 44 H -0.243 1.243 45 H 0.111 0.889 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 -5.212 -2.655 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.310 3.690 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.159 0.841 7 C -0.122 4.122 8 C -0.771 4.771 9 H 0.173 0.827 10 S 2.689 3.311 11 O -0.910 6.910 12 O -0.940 6.940 13 O -0.612 6.612 14 C 0.033 3.967 15 C -0.165 4.165 16 C 0.081 3.919 17 O -0.206 6.206 18 C -0.078 4.078 19 C 0.081 3.919 20 O -0.206 6.206 21 C -0.076 4.076 22 C -0.176 4.176 23 C -0.117 4.117 24 C -0.200 4.200 25 O -0.330 6.330 26 Si 0.632 3.368 27 C -0.134 4.134 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.177 0.823 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.173 0.827 41 H 0.091 0.909 42 H 0.222 0.778 43 H -0.160 1.160 44 H -0.167 1.167 45 H 0.130 0.870 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.968 -4.499 -3.433 5.992 hybrid contribution -0.269 0.763 0.931 1.233 sum 1.699 -3.736 -2.502 4.807 Atomic orbital electron populations 1.23364 0.75647 1.04168 1.02878 1.86504 1.23921 1.32874 1.83703 1.23382 0.91367 0.81715 0.72496 1.90715 1.66803 1.36416 1.44590 1.22454 0.88112 1.00058 1.00915 0.84147 1.22606 0.93633 0.96072 0.99844 1.32449 1.08216 1.16987 1.19440 0.82744 1.05665 0.74552 0.75450 0.75473 1.93683 1.51863 1.85195 1.60248 1.93658 1.73059 1.46186 1.81118 1.85739 1.27784 1.85707 1.61927 1.17289 0.83119 0.95432 1.00881 1.21250 0.93149 0.99200 1.02921 1.17935 0.89836 0.87096 0.97050 1.86240 1.41984 1.21065 1.71351 1.23309 1.01313 0.87383 0.95839 1.18326 0.86478 0.91944 0.95176 1.86272 1.28828 1.39154 1.66378 1.23268 1.01763 0.86527 0.96040 1.20919 0.94242 0.98323 1.04152 1.20082 0.96560 0.95759 0.99329 1.25797 0.97764 0.90012 1.06476 1.86732 1.88631 1.39057 1.18612 0.93204 0.85402 0.87186 0.70992 1.22846 0.95431 0.98323 0.96832 0.91580 0.91648 0.87670 0.87091 0.87513 0.82319 0.91564 0.92158 0.87207 0.92010 0.92416 0.87120 0.82693 0.90852 0.77835 1.15985 1.16750 0.87025 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.02 16 2 O -0.35 -0.09 10.57 -39.26 -0.41 -0.50 16 3 C 0.47 0.47 7.49 36.00 0.27 0.74 16 4 O -0.50 -2.07 15.65 -18.75 -0.29 -2.37 16 5 C -0.10 0.19 4.26 -90.87 -0.39 -0.20 16 6 H 0.14 -0.69 8.14 -51.93 -0.42 -1.11 16 7 C -0.08 0.09 6.99 -25.92 -0.18 -0.09 16 8 C -0.67 0.71 2.79 -25.92 -0.07 0.64 16 9 H 0.15 -0.38 3.84 -51.93 -0.20 -0.58 16 10 S 2.59 5.97 5.15 -107.50 -0.55 5.42 16 11 O -0.91 -4.58 17.25 -67.04 -1.16 -5.74 16 12 O -0.94 -3.91 15.67 -67.04 -1.05 -4.96 16 13 O -0.65 -1.18 9.12 -52.00 -0.47 -1.66 16 14 C 0.07 0.15 4.92 -39.25 -0.19 -0.05 16 15 C -0.14 -0.34 7.52 -39.31 -0.30 -0.64 16 16 C 0.13 0.35 6.70 -39.14 -0.26 0.09 16 17 O -0.29 -0.80 10.28 -34.30 -0.35 -1.15 16 18 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 19 C 0.13 0.29 6.70 -39.14 -0.26 0.02 16 20 O -0.29 -0.61 10.28 -34.57 -0.36 -0.97 16 21 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 22 C -0.16 -0.13 7.65 -39.48 -0.30 -0.43 16 23 C -0.11 -0.08 4.35 -104.46 -0.45 -0.54 16 24 C -0.09 0.11 2.04 36.00 0.07 0.18 16 25 O -0.52 0.50 12.65 -35.23 -0.45 0.06 16 26 Si 0.74 -1.78 29.56 -169.99 -5.02 -6.81 16 27 C -0.10 0.22 6.55 -25.82 -0.17 0.05 16 28 H 0.07 -0.06 8.13 -51.93 -0.42 -0.49 16 29 H 0.06 -0.08 8.13 -51.93 -0.42 -0.50 16 30 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 31 H 0.11 -0.01 7.40 -51.92 -0.38 -0.39 16 32 H 0.11 -0.31 8.14 -51.92 -0.42 -0.73 16 33 H 0.16 0.19 6.10 -52.49 -0.32 -0.13 16 34 H 0.07 -0.06 7.66 -51.93 -0.40 -0.45 16 35 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 36 H 0.11 -0.27 8.14 -51.93 -0.42 -0.69 16 37 H 0.06 -0.16 7.66 -51.93 -0.40 -0.56 16 38 H 0.06 -0.15 7.66 -51.93 -0.40 -0.55 16 39 H 0.11 -0.37 8.14 -51.93 -0.42 -0.80 16 40 H 0.16 -0.11 4.16 -52.49 -0.22 -0.33 16 41 H 0.07 -0.19 2.73 -51.93 -0.14 -0.33 16 42 H 0.37 -1.10 9.08 45.56 0.41 -0.69 16 43 H -0.24 0.51 6.89 56.52 0.39 0.90 16 44 H -0.24 0.21 6.47 56.52 0.37 0.57 16 45 H 0.11 -0.58 7.03 -51.93 -0.37 -0.94 16 46 H 0.12 -0.18 7.37 -51.93 -0.38 -0.56 16 LS Contribution 383.00 15.07 5.77 5.77 Total: 0.00 -10.90 383.00 -8.93 -19.83 By element: Atomic # 1 Polarization: -4.29 SS G_CDS: -5.39 Total: -9.68 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 0.81 Total: 2.76 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -4.54 Total: -17.29 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: -5.02 Total: -6.81 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -0.55 Total: 5.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -10.90 -8.93 -19.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159502_13206342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.793 kcal (2) G-P(sol) polarization free energy of solvation -10.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds