Wall clock time and date at job start Mon Mar 8 2021 14:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 117.00158 * 2 1 4 4 O 1.20829 * 119.99622 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00246 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.85249 * 48.80389 * 5 3 2 7 7 C 1.53781 * 113.61667 * 179.97438 * 5 3 2 8 8 C 1.53773 * 87.08532 * 140.06595 * 7 5 3 9 9 H 1.09005 * 113.61618 * 89.19716 * 8 7 5 10 10 S 1.81399 * 113.61686 * 220.01968 * 8 7 5 11 11 O 1.42102 * 110.54122 * 69.37784 * 10 8 7 12 12 O 1.42092 * 110.54210 * 292.62542 * 10 8 7 13 13 O 1.52203 * 104.45090 * 181.00222 * 10 8 7 14 14 C 1.35979 * 114.00127 * 75.60677 * 13 10 8 15 15 C 1.38668 * 119.97839 * 81.06550 * 14 13 10 16 16 C 1.38534 * 119.94398 * 179.97438 * 15 14 13 17 17 O 1.35990 * 120.04203 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00411 * 359.97438 * 17 16 15 19 19 C 1.39135 * 119.91454 * 359.97438 * 16 15 14 20 20 O 1.36077 * 120.01679 * 180.02562 * 19 16 15 21 21 C 1.42907 * 116.99539 * 179.97438 * 20 19 16 22 22 C 1.38528 * 119.96343 * 0.02562 * 19 16 15 23 23 C 1.38235 * 120.05108 * 0.02562 * 22 19 16 24 24 C 1.50695 * 119.95362 * 179.97438 * 23 22 19 25 25 O 1.42902 * 109.47165 * 80.40488 * 24 23 22 26 26 Si 1.86299 * 109.47439 * 320.40462 * 24 23 22 27 27 C 1.53785 * 87.17344 * 334.61178 * 8 7 5 28 28 H 1.08996 * 109.47121 * 300.00706 * 1 2 3 29 29 H 1.09002 * 109.46727 * 60.00444 * 1 2 3 30 30 H 1.08997 * 109.47169 * 180.02562 * 1 2 3 31 31 H 1.09008 * 113.61566 * 25.51443 * 7 5 3 32 32 H 1.09008 * 113.61666 * 254.61527 * 7 5 3 33 33 H 1.08000 * 120.02366 * 359.70289 * 15 14 13 34 34 H 1.09000 * 109.47174 * 300.00204 * 18 17 16 35 35 H 1.09004 * 109.46636 * 59.99604 * 18 17 16 36 36 H 1.08996 * 109.47620 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47354 * 299.99964 * 21 20 19 38 38 H 1.08999 * 109.46853 * 60.00106 * 21 20 19 39 39 H 1.09002 * 109.46579 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.97482 * 179.97438 * 22 19 16 41 41 H 1.09003 * 109.47533 * 200.40840 * 24 23 22 42 42 H 0.96698 * 113.99919 * 60.00364 * 25 24 23 43 43 H 1.48501 * 109.99933 * 300.00071 * 26 24 23 44 44 H 1.48499 * 110.00083 * 61.31693 * 26 24 23 45 45 H 1.09000 * 113.61728 * 139.93661 * 27 8 7 46 46 H 1.09001 * 113.61130 * 270.84392 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0240 0.6362 -0.7549 7 6 4.1078 2.7142 -0.0001 8 6 5.1820 2.2270 0.9864 9 1 6.0820 1.8496 0.5008 10 16 5.5412 3.4112 2.3128 11 8 4.4391 3.5110 3.2042 12 8 6.1659 4.5742 1.7872 13 8 6.6307 2.7398 3.1367 14 6 7.8603 2.7697 2.5568 15 6 8.6447 3.9091 2.6539 16 6 9.8975 3.9385 2.0634 17 8 10.6682 5.0550 2.1569 18 6 10.1229 6.1612 2.8788 19 6 10.3662 2.8243 1.3744 20 8 11.5967 2.8508 0.7939 21 6 12.0136 1.6712 0.1033 22 6 9.5795 1.6880 1.2796 23 6 8.3292 1.6606 1.8686 24 6 7.4750 0.4235 1.7637 25 8 7.9045 -0.5354 2.7322 26 14 7.6401 -0.3022 0.0558 27 6 4.1946 1.1222 1.3978 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.4177 3.4406 0.4293 32 1 4.5100 3.0290 -0.9632 33 1 8.2774 4.7743 3.1858 34 1 9.1964 6.4838 2.4037 35 1 9.9185 5.8594 3.9060 36 1 10.8379 6.9839 2.8775 37 1 12.0357 0.8318 0.7983 38 1 11.3135 1.4562 -0.7040 39 1 13.0096 1.8261 -0.3116 40 1 9.9430 0.8232 0.7445 41 1 6.4330 0.6847 1.9482 42 1 7.8457 -0.2248 3.6461 43 1 7.1966 0.6853 -0.9607 44 1 9.0507 -0.6919 -0.1963 45 1 4.6667 0.1535 1.5618 46 1 3.5283 1.4124 2.2102 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8159502_13206342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:07:27 Heat of formation + Delta-G solvation = -214.221567 kcal Electronic energy + Delta-G solvation = -36864.056044 eV Core-core repulsion = 31816.833134 eV Total energy + Delta-G solvation = -5047.222910 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.109 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.88603 -41.95412 -41.22073 -39.82425 -39.70705 -38.65905 -38.49290 -37.53830 -37.43664 -36.91354 -32.55065 -31.34235 -29.99207 -28.96505 -28.30892 -27.84838 -27.32346 -26.39468 -24.34280 -23.67850 -23.11480 -21.90001 -20.87289 -20.17413 -19.79560 -19.43942 -18.93357 -18.80185 -18.40827 -18.09331 -17.70766 -17.51230 -17.34131 -17.02097 -16.83407 -16.41172 -16.38463 -16.08393 -15.92265 -15.66622 -15.60028 -14.81202 -14.74099 -14.52290 -14.29120 -14.07043 -14.03373 -13.87789 -13.87209 -13.69927 -13.65588 -13.50640 -13.48268 -13.42490 -13.07432 -12.80710 -12.80047 -12.57753 -12.32862 -12.20906 -12.11033 -11.96134 -11.82690 -11.64093 -11.55438 -11.39191 -11.16593 -10.27476 -9.27227 -4.93057 -1.39768 -0.34941 -0.31212 0.66343 1.03404 1.15851 1.55994 1.67774 1.84608 1.93387 1.97193 1.98178 2.24176 2.40666 2.68304 2.87234 3.08577 3.13129 3.25461 3.41226 3.45378 3.63614 3.66153 3.74995 3.83955 4.01343 4.13410 4.14740 4.16349 4.22692 4.23777 4.26219 4.29400 4.30979 4.32035 4.34977 4.39483 4.55413 4.57248 4.61369 4.64465 4.68313 4.72489 4.74467 4.89301 5.06239 5.33217 5.71947 6.16786 6.52157 6.62694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.466 3.534 4 O -0.539 6.539 5 C -0.088 4.088 6 H 0.182 0.818 7 C -0.096 4.096 8 C -0.645 4.645 9 H 0.175 0.825 10 S 2.586 3.414 11 O -0.950 6.950 12 O -0.970 6.970 13 O -0.652 6.652 14 C 0.061 3.939 15 C -0.156 4.156 16 C 0.110 3.890 17 O -0.312 6.312 18 C 0.009 3.991 19 C 0.120 3.880 20 O -0.314 6.314 21 C 0.008 3.992 22 C -0.157 4.157 23 C -0.109 4.109 24 C -0.108 4.108 25 O -0.530 6.530 26 Si 0.784 3.216 27 C -0.100 4.100 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.159 0.841 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.126 0.874 40 H 0.172 0.828 41 H 0.086 0.914 42 H 0.381 0.619 43 H -0.231 1.231 44 H -0.266 1.266 45 H 0.149 0.851 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -7.530 -3.989 8.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.310 3.690 4 O -0.429 6.429 5 C -0.107 4.107 6 H 0.199 0.801 7 C -0.135 4.135 8 C -0.755 4.755 9 H 0.193 0.807 10 S 2.686 3.314 11 O -0.948 6.948 12 O -0.968 6.968 13 O -0.611 6.611 14 C 0.019 3.981 15 C -0.177 4.177 16 C 0.064 3.936 17 O -0.226 6.226 18 C -0.085 4.085 19 C 0.073 3.927 20 O -0.227 6.227 21 C -0.086 4.086 22 C -0.176 4.176 23 C -0.113 4.113 24 C -0.214 4.214 25 O -0.337 6.337 26 Si 0.681 3.319 27 C -0.138 4.138 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.177 0.823 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.144 0.856 40 H 0.189 0.811 41 H 0.104 0.896 42 H 0.230 0.770 43 H -0.155 1.155 44 H -0.191 1.191 45 H 0.167 0.833 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.318 -6.792 -4.710 8.584 hybrid contribution -0.353 1.433 1.344 1.996 sum 1.965 -5.359 -3.366 6.627 Atomic orbital electron populations 1.23558 0.75047 1.05779 1.02380 1.86507 1.24625 1.32431 1.83284 1.23993 0.92505 0.81284 0.71191 1.90704 1.67917 1.37693 1.46566 1.22654 0.86158 0.99883 1.02046 0.80082 1.22766 0.93365 0.96725 1.00595 1.32288 1.09330 1.16158 1.17684 0.80750 1.05690 0.73850 0.75989 0.75918 1.93632 1.52986 1.86108 1.62106 1.93617 1.73359 1.48364 1.81472 1.85703 1.27792 1.85405 1.62179 1.17453 0.83062 0.95944 1.01658 1.21367 0.93370 0.99695 1.03228 1.18130 0.90129 0.87563 0.97823 1.86201 1.42710 1.21680 1.71993 1.23516 1.01796 0.87139 0.96043 1.18524 0.86848 0.92208 0.95145 1.86245 1.28762 1.41020 1.66664 1.23559 1.02847 0.85766 0.96395 1.21123 0.94056 0.98320 1.04056 1.20345 0.96712 0.96009 0.98209 1.26185 0.98021 0.89318 1.07908 1.86702 1.88673 1.39067 1.19266 0.92779 0.84077 0.85893 0.69188 1.23043 0.94869 0.99405 0.96497 0.92332 0.91996 0.85012 0.88877 0.85361 0.82311 0.91755 0.91300 0.85418 0.91094 0.91258 0.85591 0.81095 0.89643 0.76963 1.15511 1.19121 0.83331 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.12 16 2 O -0.35 0.18 10.57 -51.42 -0.54 -0.36 16 3 C 0.47 0.71 7.49 71.23 0.53 1.24 16 4 O -0.54 -5.00 15.65 21.95 0.34 -4.65 16 5 C -0.09 0.51 4.26 -10.96 -0.05 0.47 16 6 H 0.18 -2.54 8.14 -2.39 -0.02 -2.56 16 7 C -0.10 0.28 6.99 31.12 0.22 0.49 16 8 C -0.65 1.94 2.79 31.12 0.09 2.03 16 9 H 0.18 -1.24 3.84 -2.38 -0.01 -1.25 16 10 S 2.59 15.35 5.15 -56.49 -0.29 15.06 16 11 O -0.95 -11.70 17.25 -118.57 -2.05 -13.75 16 12 O -0.97 -10.01 15.67 -118.57 -1.86 -11.87 16 13 O -0.65 -3.05 9.12 -62.41 -0.57 -3.62 16 14 C 0.06 0.28 4.92 22.48 0.11 0.39 16 15 C -0.16 -0.99 7.52 22.44 0.17 -0.83 16 16 C 0.11 0.78 6.70 22.56 0.15 0.93 16 17 O -0.31 -2.23 10.28 -79.49 -0.82 -3.05 16 18 C 0.01 0.00 9.81 113.37 1.11 1.12 16 19 C 0.12 0.61 6.70 22.55 0.15 0.76 16 20 O -0.31 -1.44 10.28 -80.48 -0.83 -2.27 16 21 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 22 C -0.16 -0.19 7.65 22.34 0.17 -0.02 16 23 C -0.11 -0.11 4.35 -19.76 -0.09 -0.19 16 24 C -0.11 0.44 2.04 71.23 0.15 0.58 16 25 O -0.53 1.83 12.65 -148.98 -1.89 -0.06 16 26 Si 0.78 -5.90 29.56 68.60 2.03 -3.88 16 27 C -0.10 0.62 6.55 31.18 0.20 0.82 16 28 H 0.06 -0.08 8.13 -2.39 -0.02 -0.10 16 29 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 30 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 31 H 0.09 0.12 7.40 -2.38 -0.02 0.10 16 32 H 0.13 -0.93 8.14 -2.38 -0.02 -0.95 16 33 H 0.16 0.79 6.10 -2.91 -0.02 0.77 16 34 H 0.06 0.02 7.66 -2.39 -0.02 0.01 16 35 H 0.07 -0.13 7.66 -2.39 -0.02 -0.15 16 36 H 0.13 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H 0.07 -0.42 7.66 -2.39 -0.02 -0.44 16 38 H 0.07 -0.44 7.66 -2.39 -0.02 -0.46 16 39 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.17 -0.46 4.16 -2.91 -0.01 -0.47 16 41 H 0.09 -0.60 2.73 -2.39 -0.01 -0.61 16 42 H 0.38 -2.59 9.08 -74.06 -0.67 -3.26 16 43 H -0.23 1.85 6.89 99.48 0.69 2.53 16 44 H -0.27 0.99 6.47 99.48 0.64 1.63 16 45 H 0.15 -2.03 7.03 -2.39 -0.02 -2.05 16 46 H 0.10 -0.32 7.37 -2.39 -0.02 -0.34 16 Total: 0.00 -27.98 383.00 -0.88 -28.87 By element: Atomic # 1 Polarization: -10.77 SS G_CDS: 0.35 Total: -10.42 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 5.23 Total: 9.99 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -8.20 Total: -39.63 kcal Atomic # 14 Polarization: -5.90 SS G_CDS: 2.03 Total: -3.88 kcal Atomic # 16 Polarization: 15.35 SS G_CDS: -0.29 Total: 15.06 kcal Total: -27.98 -0.88 -28.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159502_13206342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.352 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds