Wall clock time and date at job start Mon Mar 8 2021 11:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35992 * 116.99823 * 2 1 4 4 C 1.38498 * 120.04366 * 0.23246 * 3 2 1 5 5 C 1.38714 * 119.94550 * 180.25058 * 4 3 2 6 6 O 1.35974 * 119.97966 * 179.76551 * 5 4 3 7 7 S 1.52204 * 113.99941 * 269.72629 * 6 5 4 8 8 O 1.42101 * 104.27993 * 318.93092 * 7 6 5 9 9 O 1.42102 * 104.27313 * 191.07344 * 7 6 5 10 10 C 1.81399 * 104.45031 * 75.00365 * 7 6 5 11 11 C 1.52996 * 109.47218 * 179.97438 * 10 7 6 12 12 C 1.52996 * 109.47168 * 179.97438 * 11 10 7 13 13 Si 1.86302 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.86300 * 109.46959 * 60.00084 * 13 12 11 15 15 C 1.86300 * 109.47448 * 180.02562 * 13 12 11 16 16 C 1.86307 * 109.47131 * 300.00273 * 13 12 11 17 17 C 1.38656 * 120.03285 * 359.49833 * 5 4 3 18 18 C 1.50702 * 119.95329 * 180.25116 * 17 5 4 19 19 O 1.42901 * 109.46981 * 74.99637 * 18 17 5 20 20 Si 1.86292 * 109.47326 * 194.99485 * 18 17 5 21 21 H 1.48506 * 109.46965 * 59.99717 * 20 18 17 22 22 H 1.48497 * 109.47381 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47093 * 300.00231 * 20 18 17 24 24 C 1.38274 * 120.09282 * 0.26512 * 17 5 4 25 25 C 1.38493 * 120.05068 * 359.97438 * 24 17 5 26 26 O 1.36073 * 120.01911 * 179.97438 * 25 24 17 27 27 C 1.42900 * 116.99848 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47249 * 300.00274 * 1 2 3 29 29 H 1.09002 * 109.47052 * 59.99862 * 1 2 3 30 30 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.03130 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.46838 * 300.00066 * 10 7 6 33 33 H 1.08998 * 109.46934 * 59.99866 * 10 7 6 34 34 H 1.09004 * 109.47227 * 300.00383 * 11 10 7 35 35 H 1.09001 * 109.46834 * 59.99744 * 11 10 7 36 36 H 1.08994 * 109.47198 * 300.00064 * 12 11 10 37 37 H 1.09007 * 109.46582 * 60.00331 * 12 11 10 38 38 H 1.09001 * 109.46918 * 59.99807 * 14 13 12 39 39 H 1.09004 * 109.47255 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47145 * 300.00148 * 14 13 12 41 41 H 1.09009 * 109.46602 * 59.99700 * 15 13 12 42 42 H 1.08992 * 109.47415 * 179.97438 * 15 13 12 43 43 H 1.09001 * 109.46835 * 300.00441 * 15 13 12 44 44 H 1.09002 * 109.46809 * 60.00184 * 16 13 12 45 45 H 1.08995 * 109.46840 * 179.97438 * 16 13 12 46 46 H 1.08998 * 109.47322 * 299.99954 * 16 13 12 47 47 H 1.09001 * 109.46936 * 315.00069 * 18 17 5 48 48 H 0.96706 * 114.00326 * 299.99660 * 19 18 17 49 49 H 1.07999 * 119.97687 * 179.97438 * 24 17 5 50 50 H 1.09001 * 109.47115 * 59.99515 * 27 26 25 51 51 H 1.08996 * 109.47601 * 180.02562 * 27 26 25 52 52 H 1.09011 * 109.47235 * 300.00184 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2929 2.3738 0.0049 5 6 1.9247 3.6087 -0.0004 6 8 1.1856 4.7500 -0.0005 7 16 0.8496 5.2699 -1.3909 8 8 2.0473 5.0854 -2.1330 9 8 0.3230 6.5696 -1.1612 10 6 -0.4488 4.1538 -1.9900 11 6 -0.8770 4.5779 -3.3963 12 6 -1.9717 3.6361 -3.9018 13 14 -2.4937 4.1530 -5.6139 14 6 -1.0277 4.0733 -6.7607 15 6 -3.8272 3.0067 -6.2292 16 6 -3.1488 5.8963 -5.5636 17 6 3.3094 3.6798 0.0000 18 6 3.9939 5.0223 0.0000 19 8 3.8992 5.6053 1.3012 20 14 5.7876 4.8049 -0.4539 21 1 5.8860 4.1990 -1.8062 22 1 6.4623 6.1278 -0.4533 23 1 6.4444 3.9144 0.5365 24 6 4.0631 2.5205 0.0001 25 6 3.4361 1.2856 0.0003 26 8 4.1785 0.1452 -0.0001 27 6 5.5995 0.2962 -0.0014 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2143 2.3187 0.0091 32 1 -0.0662 3.1335 -2.0185 33 1 -1.3068 4.2015 -1.3195 34 1 -1.2597 5.5981 -3.3674 35 1 -0.0192 4.5306 -4.0670 36 1 -1.5886 2.6161 -3.9308 37 1 -2.8297 3.6831 -3.2310 38 1 -0.6444 3.0533 -6.7900 39 1 -1.3330 4.3762 -7.7623 40 1 -0.2478 4.7443 -6.4005 41 1 -4.6849 3.0537 -5.5580 42 1 -4.1329 3.3093 -7.2306 43 1 -3.4443 1.9865 -6.2585 44 1 -2.3689 6.5673 -5.2035 45 1 -3.4538 6.1988 -6.5653 46 1 -4.0065 5.9430 -4.8926 47 1 3.5118 5.6760 -0.7269 48 1 2.9916 5.7478 1.6033 49 1 5.1416 2.5780 0.0000 50 1 5.9073 0.8458 0.8882 51 1 6.0694 -0.6873 -0.0021 52 1 5.9057 0.8454 -0.8918 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8159502_14927650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:59:02 Heat of formation + Delta-G solvation = -226.240328 kcal Electronic energy + Delta-G solvation = -34833.862620 eV Core-core repulsion = 30244.190862 eV Total energy + Delta-G solvation = -4589.671759 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 392.142 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.74321 -41.12021 -39.74546 -38.48669 -38.19915 -37.26996 -36.85792 -36.06673 -32.47129 -31.27739 -29.80452 -28.92515 -28.56029 -28.48856 -28.41779 -28.38992 -26.54782 -24.23791 -23.27763 -23.00182 -21.66987 -20.00835 -19.49227 -19.10811 -18.80635 -18.15064 -17.72835 -17.69280 -17.29744 -16.86980 -16.46316 -16.42092 -16.04934 -15.84624 -15.57800 -15.50209 -15.05025 -14.92312 -14.36910 -14.26690 -14.22151 -14.15260 -14.06061 -13.95560 -13.76964 -13.71170 -13.59842 -13.49671 -13.33421 -13.29115 -13.22685 -13.18183 -13.16865 -13.12711 -12.88780 -12.67360 -12.39724 -12.26822 -12.11933 -12.07517 -11.90131 -11.82601 -11.38772 -11.04382 -10.91688 -10.88254 -10.65183 -10.17645 -9.12092 -1.16323 -0.25509 -0.10730 0.90007 1.16141 1.48895 1.53814 1.63356 1.76075 1.77659 1.92153 1.95588 1.97608 2.09382 2.43793 2.53730 2.79519 3.25033 3.30326 3.31208 3.46403 3.55130 3.69296 3.79666 3.84420 3.90070 3.96332 4.00239 4.03964 4.10078 4.11159 4.17842 4.35915 4.39456 4.43317 4.46444 4.52406 4.55310 4.63556 4.64784 4.68441 4.69201 4.70210 4.71252 4.72328 4.80705 4.86529 5.14438 5.17204 5.39341 5.47667 5.49752 5.72266 6.20984 6.52357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.293 6.293 3 C 0.124 3.876 4 C -0.185 4.185 5 C 0.075 3.925 6 O -0.659 6.659 7 S 2.577 3.423 8 O -0.943 6.943 9 O -0.921 6.921 10 C -0.647 4.647 11 C -0.101 4.101 12 C -0.406 4.406 13 Si 1.002 2.998 14 C -0.453 4.453 15 C -0.449 4.449 16 C -0.454 4.454 17 C -0.069 4.069 18 C -0.110 4.110 19 O -0.532 6.532 20 Si 1.013 2.987 21 H -0.239 1.239 22 H -0.246 1.246 23 H -0.250 1.250 24 C -0.165 4.165 25 C 0.135 3.865 26 O -0.294 6.294 27 C 0.016 3.984 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.156 0.844 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.371 0.629 49 H 0.153 0.847 50 H 0.062 0.938 51 H 0.110 0.890 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -4.715 -1.554 5.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.206 6.206 3 C 0.078 3.922 4 C -0.205 4.205 5 C 0.033 3.967 6 O -0.618 6.618 7 S 2.673 3.327 8 O -0.942 6.942 9 O -0.919 6.919 10 C -0.775 4.775 11 C -0.140 4.140 12 C -0.492 4.492 13 Si 1.199 2.801 14 C -0.561 4.561 15 C -0.557 4.557 16 C -0.561 4.561 17 C -0.072 4.072 18 C -0.217 4.217 19 O -0.338 6.338 20 Si 0.831 3.169 21 H -0.162 1.162 22 H -0.170 1.170 23 H -0.174 1.174 24 C -0.183 4.183 25 C 0.088 3.912 26 O -0.207 6.207 27 C -0.079 4.079 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.173 0.827 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.219 0.781 49 H 0.170 0.830 50 H 0.080 0.920 51 H 0.129 0.871 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.016 -4.584 -1.579 4.848 hybrid contribution -2.101 -0.022 0.198 2.110 sum -2.117 -4.605 -1.381 5.254 Atomic orbital electron populations 1.23255 0.77738 1.05116 1.01577 1.86268 1.21637 1.24401 1.88327 1.17808 0.88905 0.84951 1.00570 1.21101 1.01282 0.89947 1.08201 1.17251 0.88369 0.81042 1.10060 1.85730 1.72479 1.46018 1.57586 1.06110 0.76695 0.76289 0.73559 1.93644 1.42231 1.86298 1.72015 1.93676 1.81317 1.34532 1.82379 1.30919 1.19538 1.17661 1.09372 1.20984 1.00659 1.00935 0.91427 1.26167 1.01741 1.03118 1.18136 0.79327 0.67309 0.67352 0.66137 1.26176 1.14513 1.04606 1.10786 1.26103 1.12691 1.10525 1.06345 1.26178 1.06614 1.18649 1.04677 1.20069 0.91566 0.96980 0.98580 1.25655 1.15724 0.91072 0.89282 1.86717 1.32707 1.83024 1.31304 0.84512 0.70783 0.81774 0.79827 1.16183 1.16967 1.17406 1.20956 1.01043 0.89996 1.06354 1.18277 0.88418 0.86220 0.98331 1.86251 1.19446 1.27181 1.87810 1.23310 0.77608 1.05027 1.01940 0.92097 0.92334 0.87245 0.82695 0.84727 0.84222 0.89862 0.89803 0.90060 0.89988 0.91157 0.91068 0.91099 0.91253 0.91105 0.91259 0.91098 0.91063 0.91137 0.89254 0.78052 0.83003 0.91954 0.87125 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 101.05 0.99 0.94 16 2 O -0.29 -0.26 10.28 -34.28 -0.35 -0.61 16 3 C 0.12 0.15 6.70 -39.14 -0.26 -0.11 16 4 C -0.18 0.03 7.45 -39.31 -0.29 -0.27 16 5 C 0.07 0.12 4.73 -39.25 -0.19 -0.07 16 6 O -0.66 -0.90 9.03 -51.98 -0.47 -1.37 16 7 S 2.58 4.15 4.92 -107.50 -0.53 3.62 16 8 O -0.94 -3.06 14.23 -67.04 -0.95 -4.01 16 9 O -0.92 -4.37 18.09 -67.04 -1.21 -5.59 16 10 C -0.65 1.35 5.47 37.16 0.20 1.55 16 11 C -0.10 0.19 4.59 -26.74 -0.12 0.07 16 12 C -0.41 1.27 4.45 37.16 0.17 1.44 16 13 Si 1.00 -3.34 12.19 -169.99 -2.07 -5.41 16 14 C -0.45 0.86 8.65 101.05 0.87 1.74 16 15 C -0.45 1.00 8.65 101.05 0.87 1.87 16 16 C -0.45 0.84 8.65 101.05 0.87 1.71 16 17 C -0.07 -0.17 4.68 -104.45 -0.49 -0.66 16 18 C -0.11 -0.32 2.18 36.01 0.08 -0.24 16 19 O -0.53 -1.55 12.65 -35.23 -0.45 -1.99 16 20 Si 1.01 1.56 25.74 -169.99 -4.38 -2.82 16 21 H -0.24 -0.19 7.11 56.52 0.40 0.21 16 22 H -0.25 -0.55 7.11 56.52 0.40 -0.14 16 23 H -0.25 -0.12 6.73 56.52 0.38 0.26 16 24 C -0.16 -0.25 7.64 -39.47 -0.30 -0.55 16 25 C 0.14 0.24 6.70 -39.14 -0.26 -0.02 16 26 O -0.29 -0.46 10.28 -34.54 -0.36 -0.82 16 27 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 28 H 0.06 -0.25 7.65 -51.93 -0.40 -0.65 16 29 H 0.06 -0.27 7.67 -51.93 -0.40 -0.67 16 30 H 0.11 -0.49 8.14 -51.93 -0.42 -0.91 16 31 H 0.16 -0.53 5.76 -52.49 -0.30 -0.83 16 32 H 0.13 -0.51 6.62 -51.92 -0.34 -0.86 16 33 H 0.14 -0.58 8.14 -51.92 -0.42 -1.01 16 34 H 0.08 -0.20 7.79 -51.93 -0.40 -0.61 16 35 H 0.08 -0.22 7.79 -51.93 -0.40 -0.62 16 36 H 0.08 -0.31 7.96 -51.93 -0.41 -0.72 16 37 H 0.08 -0.31 7.96 -51.92 -0.41 -0.72 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 40 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 41 H 0.07 -0.15 7.96 -51.92 -0.41 -0.57 16 42 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 43 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 44 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 45 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 46 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 47 H 0.09 0.27 5.41 -51.93 -0.28 -0.01 16 48 H 0.37 0.28 8.59 45.56 0.39 0.68 16 49 H 0.15 -0.03 3.11 -52.49 -0.16 -0.19 16 50 H 0.06 -0.17 7.66 -51.93 -0.40 -0.56 16 51 H 0.11 -0.41 8.14 -51.93 -0.42 -0.83 16 52 H 0.06 -0.18 7.66 -51.92 -0.40 -0.58 16 LS Contribution 425.95 15.07 6.42 6.42 Total: 0.00 -8.95 425.95 -8.93 -17.88 By element: Atomic # 1 Polarization: -5.95 SS G_CDS: -7.72 Total: -13.67 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 3.14 Total: 8.37 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -3.79 Total: -14.39 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: -6.45 Total: -8.23 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -0.53 Total: 3.62 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -8.95 -8.93 -17.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159502_14927650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.362 kcal (2) G-P(sol) polarization free energy of solvation -8.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds