Wall clock time and date at job start Mon Mar 8 2021 11:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35992 * 116.99823 * 2 1 4 4 C 1.38498 * 120.04366 * 0.23246 * 3 2 1 5 5 C 1.38714 * 119.94550 * 180.25058 * 4 3 2 6 6 O 1.35974 * 119.97966 * 179.76551 * 5 4 3 7 7 S 1.52204 * 113.99941 * 269.72629 * 6 5 4 8 8 O 1.42101 * 104.27993 * 318.93092 * 7 6 5 9 9 O 1.42102 * 104.27313 * 191.07344 * 7 6 5 10 10 C 1.81399 * 104.45031 * 75.00365 * 7 6 5 11 11 C 1.52996 * 109.47218 * 179.97438 * 10 7 6 12 12 C 1.52996 * 109.47168 * 179.97438 * 11 10 7 13 13 Si 1.86302 * 109.47273 * 179.97438 * 12 11 10 14 14 C 1.86300 * 109.46959 * 60.00084 * 13 12 11 15 15 C 1.86300 * 109.47448 * 180.02562 * 13 12 11 16 16 C 1.86307 * 109.47131 * 300.00273 * 13 12 11 17 17 C 1.38656 * 120.03285 * 359.49833 * 5 4 3 18 18 C 1.50702 * 119.95329 * 180.25116 * 17 5 4 19 19 O 1.42901 * 109.46981 * 74.99637 * 18 17 5 20 20 Si 1.86292 * 109.47326 * 194.99485 * 18 17 5 21 21 H 1.48506 * 109.46965 * 59.99717 * 20 18 17 22 22 H 1.48497 * 109.47381 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47093 * 300.00231 * 20 18 17 24 24 C 1.38274 * 120.09282 * 0.26512 * 17 5 4 25 25 C 1.38493 * 120.05068 * 359.97438 * 24 17 5 26 26 O 1.36073 * 120.01911 * 179.97438 * 25 24 17 27 27 C 1.42900 * 116.99848 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47249 * 300.00274 * 1 2 3 29 29 H 1.09002 * 109.47052 * 59.99862 * 1 2 3 30 30 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.03130 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.46838 * 300.00066 * 10 7 6 33 33 H 1.08998 * 109.46934 * 59.99866 * 10 7 6 34 34 H 1.09004 * 109.47227 * 300.00383 * 11 10 7 35 35 H 1.09001 * 109.46834 * 59.99744 * 11 10 7 36 36 H 1.08994 * 109.47198 * 300.00064 * 12 11 10 37 37 H 1.09007 * 109.46582 * 60.00331 * 12 11 10 38 38 H 1.09001 * 109.46918 * 59.99807 * 14 13 12 39 39 H 1.09004 * 109.47255 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.47145 * 300.00148 * 14 13 12 41 41 H 1.09009 * 109.46602 * 59.99700 * 15 13 12 42 42 H 1.08992 * 109.47415 * 179.97438 * 15 13 12 43 43 H 1.09001 * 109.46835 * 300.00441 * 15 13 12 44 44 H 1.09002 * 109.46809 * 60.00184 * 16 13 12 45 45 H 1.08995 * 109.46840 * 179.97438 * 16 13 12 46 46 H 1.08998 * 109.47322 * 299.99954 * 16 13 12 47 47 H 1.09001 * 109.46936 * 315.00069 * 18 17 5 48 48 H 0.96706 * 114.00326 * 299.99660 * 19 18 17 49 49 H 1.07999 * 119.97687 * 179.97438 * 24 17 5 50 50 H 1.09001 * 109.47115 * 59.99515 * 27 26 25 51 51 H 1.08996 * 109.47601 * 180.02562 * 27 26 25 52 52 H 1.09011 * 109.47235 * 300.00184 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2929 2.3738 0.0049 5 6 1.9247 3.6087 -0.0004 6 8 1.1856 4.7500 -0.0005 7 16 0.8496 5.2699 -1.3909 8 8 2.0473 5.0854 -2.1330 9 8 0.3230 6.5696 -1.1612 10 6 -0.4488 4.1538 -1.9900 11 6 -0.8770 4.5779 -3.3963 12 6 -1.9717 3.6361 -3.9018 13 14 -2.4937 4.1530 -5.6139 14 6 -1.0277 4.0733 -6.7607 15 6 -3.8272 3.0067 -6.2292 16 6 -3.1488 5.8963 -5.5636 17 6 3.3094 3.6798 0.0000 18 6 3.9939 5.0223 0.0000 19 8 3.8992 5.6053 1.3012 20 14 5.7876 4.8049 -0.4539 21 1 5.8860 4.1990 -1.8062 22 1 6.4623 6.1278 -0.4533 23 1 6.4444 3.9144 0.5365 24 6 4.0631 2.5205 0.0001 25 6 3.4361 1.2856 0.0003 26 8 4.1785 0.1452 -0.0001 27 6 5.5995 0.2962 -0.0014 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2143 2.3187 0.0091 32 1 -0.0662 3.1335 -2.0185 33 1 -1.3068 4.2015 -1.3195 34 1 -1.2597 5.5981 -3.3674 35 1 -0.0192 4.5306 -4.0670 36 1 -1.5886 2.6161 -3.9308 37 1 -2.8297 3.6831 -3.2310 38 1 -0.6444 3.0533 -6.7900 39 1 -1.3330 4.3762 -7.7623 40 1 -0.2478 4.7443 -6.4005 41 1 -4.6849 3.0537 -5.5580 42 1 -4.1329 3.3093 -7.2306 43 1 -3.4443 1.9865 -6.2585 44 1 -2.3689 6.5673 -5.2035 45 1 -3.4538 6.1988 -6.5653 46 1 -4.0065 5.9430 -4.8926 47 1 3.5118 5.6760 -0.7269 48 1 2.9916 5.7478 1.6033 49 1 5.1416 2.5780 0.0000 50 1 5.9073 0.8458 0.8882 51 1 6.0694 -0.6873 -0.0021 52 1 5.9057 0.8454 -0.8918 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8159502_14927650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:59:01 Heat of formation + Delta-G solvation = -224.514074 kcal Electronic energy + Delta-G solvation = -34833.787764 eV Core-core repulsion = 30244.190862 eV Total energy + Delta-G solvation = -4589.596903 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 392.142 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.76511 -41.11272 -39.67890 -38.59984 -38.34148 -37.41084 -36.93199 -35.87543 -32.48679 -31.24103 -29.61707 -28.81511 -28.36198 -28.30910 -28.22312 -28.17770 -26.59775 -24.20204 -23.30817 -22.82885 -21.66093 -20.01686 -19.54192 -19.12028 -18.85890 -18.25206 -17.74818 -17.70315 -17.22235 -16.77019 -16.44966 -16.28586 -16.02205 -15.83740 -15.63960 -15.47981 -15.05553 -14.76498 -14.29105 -14.17202 -14.14890 -14.03150 -13.97602 -13.87051 -13.63288 -13.58158 -13.54034 -13.46095 -13.39371 -13.29664 -13.15618 -13.05719 -12.98340 -12.98011 -12.73309 -12.48351 -12.32205 -12.20896 -12.08056 -11.96269 -11.82921 -11.79267 -11.49268 -11.19439 -10.71208 -10.68567 -10.43237 -10.17287 -9.12867 -1.20294 -0.25969 -0.15477 0.85072 1.03291 1.35890 1.43067 1.82580 1.91153 2.00491 2.01510 2.01856 2.07569 2.09903 2.43114 2.73143 2.76459 3.21429 3.33036 3.42214 3.59802 3.65388 3.72332 3.77481 3.85638 4.11298 4.16205 4.21443 4.27569 4.32079 4.33899 4.38254 4.41204 4.48319 4.61376 4.65831 4.73517 4.78272 4.80094 4.81227 4.82921 4.83606 4.86504 4.87277 4.87610 4.88539 5.09169 5.16396 5.44964 5.59936 5.66640 5.66892 5.83278 6.28488 6.41021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.312 6.312 3 C 0.119 3.881 4 C -0.175 4.175 5 C 0.064 3.936 6 O -0.661 6.661 7 S 2.566 3.434 8 O -0.969 6.969 9 O -0.964 6.964 10 C -0.626 4.626 11 C -0.121 4.121 12 C -0.408 4.408 13 Si 1.068 2.932 14 C -0.474 4.474 15 C -0.463 4.463 16 C -0.476 4.476 17 C -0.089 4.089 18 C -0.123 4.123 19 O -0.542 6.542 20 Si 1.018 2.982 21 H -0.230 1.230 22 H -0.262 1.262 23 H -0.233 1.233 24 C -0.169 4.169 25 C 0.123 3.877 26 O -0.311 6.311 27 C 0.004 3.996 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.189 0.811 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.377 0.623 49 H 0.163 0.837 50 H 0.068 0.932 51 H 0.127 0.873 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 -6.597 -1.380 7.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.226 6.226 3 C 0.072 3.928 4 C -0.196 4.196 5 C 0.022 3.978 6 O -0.620 6.620 7 S 2.668 3.332 8 O -0.968 6.968 9 O -0.963 6.963 10 C -0.758 4.758 11 C -0.160 4.160 12 C -0.494 4.494 13 Si 1.260 2.740 14 C -0.580 4.580 15 C -0.569 4.569 16 C -0.581 4.581 17 C -0.092 4.092 18 C -0.229 4.229 19 O -0.349 6.349 20 Si 0.834 3.166 21 H -0.152 1.152 22 H -0.187 1.187 23 H -0.156 1.156 24 C -0.188 4.188 25 C 0.075 3.925 26 O -0.224 6.224 27 C -0.090 4.090 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.139 0.861 31 H 0.206 0.794 32 H 0.177 0.823 33 H 0.187 0.813 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.226 0.774 49 H 0.180 0.820 50 H 0.087 0.913 51 H 0.145 0.855 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.187 -6.436 -1.403 6.693 hybrid contribution -1.793 0.522 0.098 1.870 sum -2.980 -5.914 -1.305 6.750 Atomic orbital electron populations 1.23609 0.75778 1.06526 1.03177 1.86254 1.23811 1.24277 1.88224 1.17967 0.88941 0.85545 1.00337 1.21359 1.02851 0.88598 1.06763 1.17437 0.88302 0.81596 1.10421 1.85691 1.72543 1.46280 1.57443 1.06248 0.77242 0.76441 0.73307 1.93606 1.44207 1.86623 1.72327 1.93618 1.81876 1.37716 1.83052 1.30792 1.18300 1.17029 1.09642 1.21226 1.01516 1.01676 0.91563 1.26193 1.01713 1.03524 1.17988 0.78317 0.65215 0.65105 0.65376 1.26441 1.15701 1.04595 1.11255 1.26268 1.13379 1.11107 1.06167 1.26455 1.06783 1.20506 1.04360 1.20148 0.92349 0.96824 0.99846 1.25830 1.16825 0.91471 0.88814 1.86678 1.33380 1.83218 1.31626 0.84497 0.69933 0.81354 0.80798 1.15197 1.18658 1.15594 1.21045 1.01601 0.89741 1.06368 1.18498 0.89101 0.86296 0.98609 1.86227 1.20946 1.27402 1.87843 1.23586 0.76224 1.06423 1.02748 0.90918 0.90226 0.86138 0.79351 0.82292 0.81307 0.89735 0.89508 0.88572 0.88561 0.90962 0.91651 0.91471 0.91019 0.91755 0.90983 0.91512 0.91642 0.90976 0.90228 0.77405 0.82024 0.91326 0.85487 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.31 -0.18 10.28 -79.53 -0.82 -0.99 16 3 C 0.12 0.19 6.70 22.56 0.15 0.34 16 4 C -0.18 0.28 7.45 22.45 0.17 0.45 16 5 C 0.06 0.21 4.73 22.48 0.11 0.31 16 6 O -0.66 -2.10 9.03 -62.35 -0.56 -2.67 16 7 S 2.57 9.66 4.92 -56.49 -0.28 9.38 16 8 O -0.97 -7.61 14.23 -118.57 -1.69 -9.30 16 9 O -0.96 -10.70 18.09 -118.57 -2.15 -12.85 16 10 C -0.63 3.89 5.47 71.98 0.39 4.28 16 11 C -0.12 0.64 4.59 30.59 0.14 0.78 16 12 C -0.41 3.60 4.45 71.98 0.32 3.92 16 13 Si 1.07 -8.12 12.19 68.60 0.84 -7.28 16 14 C -0.47 1.81 8.65 113.37 0.98 2.79 16 15 C -0.46 2.51 8.65 113.37 0.98 3.49 16 16 C -0.48 1.71 8.65 113.37 0.98 2.69 16 17 C -0.09 -0.50 4.68 -19.76 -0.09 -0.60 16 18 C -0.12 -0.90 2.18 71.24 0.16 -0.75 16 19 O -0.54 -4.12 12.65 -148.98 -1.89 -6.01 16 20 Si 1.02 4.15 25.74 68.60 1.77 5.92 16 21 H -0.23 -0.51 7.11 99.48 0.71 0.20 16 22 H -0.26 -1.65 7.11 99.48 0.71 -0.94 16 23 H -0.23 -0.23 6.73 99.48 0.67 0.44 16 24 C -0.17 -0.58 7.64 22.34 0.17 -0.41 16 25 C 0.12 0.45 6.70 22.56 0.15 0.60 16 26 O -0.31 -1.00 10.28 -80.45 -0.83 -1.83 16 27 C 0.00 -0.02 9.81 113.37 1.11 1.10 16 28 H 0.07 -0.79 7.65 -2.39 -0.02 -0.81 16 29 H 0.08 -1.02 7.67 -2.39 -0.02 -1.04 16 30 H 0.12 -1.32 8.14 -2.39 -0.02 -1.34 16 31 H 0.19 -1.86 5.76 -2.91 -0.02 -1.87 16 32 H 0.16 -1.73 6.62 -2.39 -0.02 -1.74 16 33 H 0.17 -1.98 8.14 -2.39 -0.02 -2.00 16 34 H 0.08 -0.46 7.79 -2.38 -0.02 -0.48 16 35 H 0.09 -0.51 7.79 -2.39 -0.02 -0.53 16 36 H 0.10 -1.07 7.96 -2.39 -0.02 -1.09 16 37 H 0.10 -1.06 7.96 -2.38 -0.02 -1.08 16 38 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 39 H 0.06 -0.18 7.96 -2.38 -0.02 -0.20 16 40 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 41 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 42 H 0.06 -0.25 7.96 -2.39 -0.02 -0.27 16 43 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 44 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 45 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 46 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 47 H 0.08 0.69 5.41 -2.39 -0.01 0.67 16 48 H 0.38 1.36 8.59 -74.05 -0.64 0.72 16 49 H 0.16 -0.01 3.11 -2.91 -0.01 -0.02 16 50 H 0.07 -0.38 7.66 -2.39 -0.02 -0.39 16 51 H 0.13 -1.00 8.14 -2.39 -0.02 -1.02 16 52 H 0.07 -0.44 7.66 -2.38 -0.02 -0.46 16 Total: 0.00 -23.15 425.95 2.25 -20.90 By element: Atomic # 1 Polarization: -16.39 SS G_CDS: 1.02 Total: -15.38 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 6.83 Total: 20.09 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -7.93 Total: -33.64 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.60 Total: -1.36 kcal Atomic # 16 Polarization: 9.66 SS G_CDS: -0.28 Total: 9.38 kcal Total: -23.15 2.25 -20.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159502_14927650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.611 kcal (2) G-P(sol) polarization free energy of solvation -23.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds