Wall clock time and date at job start Mon Mar 8 2021 13:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.47365 * 2 1 4 4 C 1.34228 * 117.00278 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99894 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99936 * 180.02562 * 4 3 2 7 7 H 1.09003 * 112.90808 * 311.25261 * 6 4 3 8 8 C 1.53784 * 113.61744 * 82.50435 * 6 4 3 9 9 C 1.53783 * 87.08073 * 89.11454 * 8 6 4 10 10 F 1.39897 * 113.61273 * 270.88363 * 9 8 6 11 11 C 1.52997 * 113.61312 * 139.98175 * 9 8 6 12 12 S 1.81401 * 109.47098 * 82.49965 * 11 9 8 13 13 O 1.42093 * 110.54662 * 286.52752 * 12 11 9 14 14 O 1.42104 * 110.54053 * 63.27797 * 12 11 9 15 15 O 1.52198 * 104.45153 * 174.89893 * 12 11 9 16 16 C 1.35981 * 113.99942 * 75.44383 * 15 12 11 17 17 C 1.38655 * 119.97939 * 95.45367 * 16 15 12 18 18 C 1.50693 * 119.95655 * 359.97438 * 17 16 15 19 19 O 1.42902 * 109.46944 * 75.33346 * 18 17 16 20 20 Si 1.86294 * 109.47297 * 195.33133 * 18 17 16 21 21 C 1.38277 * 120.08449 * 179.73003 * 17 16 15 22 22 C 1.38487 * 120.05373 * 0.54436 * 21 17 16 23 23 O 1.36077 * 120.01849 * 179.74856 * 22 21 17 24 24 C 1.42898 * 116.99881 * 359.97438 * 23 22 21 25 25 C 1.39172 * 119.96274 * 359.73031 * 22 21 17 26 26 O 1.35992 * 120.04284 * 179.97438 * 25 22 21 27 27 C 1.42901 * 117.00118 * 180.02562 * 26 25 22 28 28 C 1.38494 * 119.91509 * 359.97438 * 25 22 21 29 29 C 1.53784 * 113.61486 * 180.02562 * 6 4 3 30 30 H 1.08994 * 109.47103 * 299.99747 * 1 2 3 31 31 H 1.09001 * 109.46749 * 60.00001 * 1 2 3 32 32 H 1.09002 * 109.46857 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47480 * 240.00276 * 2 1 3 34 34 H 1.09000 * 109.47371 * 120.00427 * 2 1 3 35 35 H 1.09001 * 113.61036 * 203.66785 * 8 6 4 36 36 H 1.08998 * 113.61201 * 334.56357 * 8 6 4 37 37 H 1.08998 * 109.47287 * 202.50271 * 11 9 8 38 38 H 1.09002 * 109.47094 * 322.50447 * 11 9 8 39 39 H 1.09004 * 109.47446 * 315.33362 * 18 17 16 40 40 H 0.96702 * 114.00020 * 185.00359 * 19 18 17 41 41 H 1.48502 * 110.00367 * 178.68287 * 20 18 17 42 42 H 1.48501 * 110.00171 * 300.00599 * 20 18 17 43 43 H 1.08004 * 119.96882 * 180.27392 * 21 17 16 44 44 H 1.08997 * 109.47461 * 59.99808 * 24 23 22 45 45 H 1.09002 * 109.47180 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46979 * 299.99605 * 24 23 22 47 47 H 1.09005 * 109.47286 * 300.00206 * 27 26 25 48 48 H 1.09007 * 109.47243 * 60.00136 * 27 26 25 49 49 H 1.09004 * 109.47589 * 180.02562 * 27 26 25 50 50 H 1.07999 * 120.02971 * 179.97438 * 28 25 22 51 51 H 1.08993 * 113.61220 * 25.42623 * 29 6 4 52 52 H 1.09000 * 113.61511 * 156.33577 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.4714 3.5827 -0.7537 8 6 3.9858 3.5766 1.3984 9 6 5.3799 2.9424 1.5373 10 9 5.3571 1.6514 2.0758 11 6 6.4027 3.8539 2.2184 12 16 6.2119 3.7376 4.0186 13 8 5.0385 4.4188 4.4408 14 8 6.4943 2.4186 4.4658 15 8 7.3536 4.5754 4.5765 16 6 7.1552 5.9169 4.4766 17 6 6.6291 6.6213 5.5488 18 6 6.2771 5.8990 6.8236 19 8 7.4735 5.5877 7.5405 20 14 5.1893 6.9872 7.8739 21 6 6.4317 7.9865 5.4515 22 6 6.7487 8.6512 4.2787 23 8 6.5494 9.9938 4.1820 24 6 6.0095 10.6538 5.3287 25 6 7.2715 7.9454 3.1992 26 8 7.5829 8.5965 2.0465 27 6 8.1149 7.8085 0.9797 28 6 7.4744 6.5791 3.3003 29 6 5.4582 2.9681 0.0011 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.0017 4.6663 1.3796 36 1 3.2518 3.1749 2.0969 37 1 7.4093 3.5431 1.9389 38 1 6.2392 4.8839 1.9016 39 1 5.7466 4.9773 6.5845 40 1 7.3289 5.0549 8.3345 41 1 4.8091 6.2742 9.1198 42 1 5.9012 8.2472 8.2067 43 1 6.0259 8.5340 6.2894 44 1 6.6813 10.5177 6.1761 45 1 5.9015 11.7178 5.1183 46 1 5.0341 10.2293 5.5665 47 1 9.0395 7.3321 1.3059 48 1 7.3917 7.0432 0.6976 49 1 8.3197 8.4491 0.1219 50 1 7.8796 6.0295 2.4636 51 1 5.9127 2.0753 -0.4281 52 1 5.8765 3.8916 -0.3994 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8159502_15494190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:25:18 Heat of formation + Delta-G solvation = -261.958178 kcal Electronic energy + Delta-G solvation = -44080.024914 eV Core-core repulsion = 38250.202775 eV Total energy + Delta-G solvation = -5829.822139 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 435.131 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -49.16893 -42.71562 -41.85241 -41.07687 -39.62093 -39.30361 -38.60518 -38.41247 -37.53324 -37.44525 -37.05061 -32.91998 -32.62284 -31.92622 -31.14633 -28.76946 -28.12525 -27.22260 -26.75396 -26.50604 -24.28689 -23.87251 -23.11800 -22.66066 -21.76902 -20.69963 -20.03330 -19.41554 -19.25104 -18.96819 -18.77420 -18.53470 -17.97415 -17.81164 -17.70855 -17.43933 -17.15561 -17.07319 -16.83693 -16.44257 -16.27665 -16.20929 -16.13290 -15.82554 -15.54933 -15.33012 -15.21914 -14.74684 -14.63792 -14.53801 -14.35482 -14.17252 -13.96906 -13.82952 -13.75194 -13.63657 -13.52720 -13.46582 -13.41931 -13.37394 -13.22666 -12.97634 -12.87259 -12.82194 -12.54684 -12.46765 -12.41748 -12.24461 -12.13303 -12.02462 -11.86823 -11.66161 -11.60283 -11.53880 -11.37570 -10.63675 -10.16136 -9.08371 -5.02680 -1.32060 -0.24629 -0.14124 0.81602 1.02136 1.13019 1.47451 1.54840 1.78569 2.01007 2.13196 2.14951 2.28457 2.60949 2.75544 2.79995 2.92989 3.07345 3.22034 3.34806 3.42017 3.45710 3.60785 3.65443 3.75959 3.80908 3.91345 3.93635 4.00940 4.07725 4.15226 4.27696 4.28791 4.31143 4.35863 4.39055 4.41887 4.46278 4.53582 4.54028 4.57369 4.64805 4.70633 4.78193 4.81783 4.82401 4.86851 4.87102 4.89807 5.03090 5.11144 5.17907 5.40607 5.89532 6.33909 6.40793 6.61821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.462 3.538 5 O -0.529 6.529 6 C -0.112 4.112 7 H 0.170 0.830 8 C -0.144 4.144 9 C 0.065 3.935 10 F -0.201 7.201 11 C -0.652 4.652 12 S 2.572 3.428 13 O -0.950 6.950 14 O -0.967 6.967 15 O -0.659 6.659 16 C 0.067 3.933 17 C -0.054 4.054 18 C -0.117 4.117 19 O -0.551 6.551 20 Si 0.773 3.227 21 C -0.159 4.159 22 C 0.124 3.876 23 O -0.309 6.309 24 C 0.004 3.996 25 C 0.129 3.871 26 O -0.309 6.309 27 C -0.001 4.001 28 C -0.189 4.189 29 C -0.111 4.111 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.172 0.828 36 H 0.083 0.917 37 H 0.182 0.818 38 H 0.203 0.797 39 H 0.068 0.932 40 H 0.396 0.604 41 H -0.278 1.278 42 H -0.255 1.255 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.125 0.875 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.191 0.809 51 H 0.085 0.915 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 9.287 -6.311 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.306 3.694 5 O -0.418 6.418 6 C -0.130 4.130 7 H 0.188 0.812 8 C -0.181 4.181 9 C 0.045 3.955 10 F -0.181 7.181 11 C -0.781 4.781 12 S 2.671 3.329 13 O -0.949 6.949 14 O -0.965 6.965 15 O -0.618 6.618 16 C 0.025 3.975 17 C -0.057 4.057 18 C -0.224 4.224 19 O -0.360 6.360 20 Si 0.673 3.327 21 C -0.177 4.177 22 C 0.076 3.924 23 O -0.222 6.222 24 C -0.090 4.090 25 C 0.082 3.918 26 O -0.222 6.222 27 C -0.095 4.095 28 C -0.210 4.210 29 C -0.149 4.149 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.190 0.810 36 H 0.101 0.899 37 H 0.200 0.800 38 H 0.220 0.780 39 H 0.087 0.913 40 H 0.246 0.754 41 H -0.205 1.205 42 H -0.181 1.181 43 H 0.187 0.813 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.139 0.861 50 H 0.208 0.792 51 H 0.103 0.897 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.503 9.689 -5.481 11.670 hybrid contribution 1.256 -2.469 0.680 2.852 sum -2.247 7.220 -4.801 8.957 Atomic orbital electron populations 1.21822 0.90369 1.04298 1.03914 1.23256 0.97135 0.79375 1.02277 1.86487 1.24034 1.33373 1.83568 1.23864 0.80810 0.93085 0.71669 1.90703 1.61093 1.44245 1.45744 1.22168 0.98200 0.90141 1.02525 0.81215 1.24042 0.93473 1.05409 0.95207 1.22072 0.97316 0.78263 0.97862 1.92992 1.97342 1.40436 1.87345 1.31287 1.11213 1.11992 1.23602 1.06024 0.73671 0.73867 0.79297 1.93617 1.49179 1.72567 1.79507 1.93627 1.83687 1.38822 1.80370 1.85767 1.65890 1.25399 1.84783 1.17594 1.06196 0.77317 0.96385 1.19204 0.98829 0.93603 0.94097 1.25398 0.93881 1.06276 0.96828 1.86544 1.30510 1.75564 1.43426 0.93961 0.83056 0.77433 0.78233 1.21046 1.05172 0.92920 0.98565 1.18423 0.97544 0.84476 0.91966 1.86235 1.78904 1.15973 1.41090 1.23597 0.99323 0.99325 0.86787 1.17899 0.97901 0.89016 0.86969 1.86272 1.78155 1.37111 1.20643 1.23676 0.99469 0.98316 0.88053 1.21394 1.06678 0.93728 0.99175 1.23738 0.93169 1.07900 0.90073 0.91306 0.90760 0.88632 0.91154 0.92186 0.81001 0.89856 0.79989 0.77967 0.91348 0.75400 1.20465 1.18093 0.81322 0.92073 0.85655 0.89991 0.91345 0.89275 0.86082 0.79212 0.89676 0.80899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.34 10.29 71.98 0.74 1.08 16 2 C 0.05 0.17 6.19 71.98 0.45 0.61 16 3 O -0.36 -1.69 10.22 -51.40 -0.53 -2.21 16 4 C 0.46 2.53 6.92 71.23 0.49 3.02 16 5 O -0.53 -6.86 14.47 21.97 0.32 -6.54 16 6 C -0.11 0.54 4.45 -11.01 -0.05 0.49 16 7 H 0.17 -2.16 8.14 -2.39 -0.02 -2.18 16 8 C -0.14 0.74 7.11 31.12 0.22 0.96 16 9 C 0.06 -0.04 1.61 -10.25 -0.02 -0.06 16 10 F -0.20 -2.35 14.38 44.97 0.65 -1.70 16 11 C -0.65 3.60 4.82 71.98 0.35 3.94 16 12 S 2.57 17.79 4.79 -56.49 -0.27 17.52 16 13 O -0.95 -7.22 15.02 -118.57 -1.78 -9.00 16 14 O -0.97 -16.90 17.26 -118.57 -2.05 -18.95 16 15 O -0.66 -4.83 9.39 -62.43 -0.59 -5.41 16 16 C 0.07 0.30 4.69 22.48 0.11 0.40 16 17 C -0.05 -0.30 4.81 -19.76 -0.10 -0.40 16 18 C -0.12 -0.73 2.28 71.23 0.16 -0.57 16 19 O -0.55 -4.30 12.79 -148.98 -1.91 -6.21 16 20 Si 0.77 0.03 30.29 68.60 2.08 2.10 16 21 C -0.16 -0.22 7.64 22.34 0.17 -0.05 16 22 C 0.12 0.16 6.70 22.55 0.15 0.31 16 23 O -0.31 -0.19 10.28 -80.49 -0.83 -1.02 16 24 C 0.00 -0.02 9.81 113.37 1.11 1.09 16 25 C 0.13 -0.08 6.70 22.56 0.15 0.07 16 26 O -0.31 0.72 10.28 -79.54 -0.82 -0.10 16 27 C 0.00 0.02 9.81 113.37 1.11 1.13 16 28 C -0.19 0.50 7.45 22.44 0.17 0.67 16 29 C -0.11 0.76 6.93 31.14 0.22 0.98 16 30 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.07 -0.25 8.14 -2.39 -0.02 -0.26 16 32 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.07 0.21 8.13 -2.38 -0.02 0.19 16 34 H 0.06 0.31 8.13 -2.39 -0.02 0.29 16 35 H 0.17 -2.46 7.96 -2.39 -0.02 -2.48 16 36 H 0.08 -0.08 8.09 -2.39 -0.02 -0.10 16 37 H 0.18 -1.94 8.14 -2.39 -0.02 -1.96 16 38 H 0.20 -3.20 6.31 -2.39 -0.02 -3.21 16 39 H 0.07 0.52 6.10 -2.38 -0.01 0.51 16 40 H 0.40 -0.01 8.86 -74.06 -0.66 -0.67 16 41 H -0.28 -1.12 7.11 99.48 0.71 -0.41 16 42 H -0.26 -0.23 6.73 99.48 0.67 0.44 16 43 H 0.17 -0.46 3.13 -2.91 -0.01 -0.47 16 44 H 0.06 -0.41 7.66 -2.39 -0.02 -0.43 16 45 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 46 H 0.08 -0.82 7.66 -2.39 -0.02 -0.84 16 47 H 0.07 -0.88 7.66 -2.38 -0.02 -0.90 16 48 H 0.09 -1.59 7.66 -2.38 -0.02 -1.61 16 49 H 0.12 -1.67 8.14 -2.39 -0.02 -1.69 16 50 H 0.19 -2.21 5.19 -2.91 -0.02 -2.22 16 51 H 0.08 -0.14 7.43 -2.39 -0.02 -0.15 16 52 H 0.17 -3.08 8.10 -2.39 -0.02 -3.10 16 Total: 0.00 -41.09 436.32 0.06 -41.03 By element: Atomic # 1 Polarization: -23.54 SS G_CDS: 0.34 Total: -23.20 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 5.44 Total: 13.68 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -8.17 Total: -49.44 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.65 Total: -1.70 kcal Atomic # 14 Polarization: 0.03 SS G_CDS: 2.08 Total: 2.10 kcal Atomic # 16 Polarization: 17.79 SS G_CDS: -0.27 Total: 17.52 kcal Total: -41.09 0.06 -41.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159502_15494190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.929 kcal (2) G-P(sol) polarization free energy of solvation -41.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds