Wall clock time and date at job start Mon Mar 8 2021 14:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47057 * 2 1 4 4 C 1.34232 * 116.99330 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00389 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99567 * 179.97438 * 4 3 2 7 7 H 1.09002 * 112.90791 * 311.25185 * 6 4 3 8 8 C 1.53779 * 113.61429 * 82.50513 * 6 4 3 9 9 C 1.53779 * 87.08402 * 139.98140 * 8 6 4 10 10 F 1.39901 * 113.61703 * 89.11572 * 9 8 6 11 11 C 1.53000 * 113.61731 * 220.02348 * 9 8 6 12 12 S 1.81408 * 109.46704 * 282.49498 * 11 9 8 13 13 O 1.42101 * 110.54170 * 291.62172 * 12 11 9 14 14 O 1.42097 * 110.54302 * 68.37560 * 12 11 9 15 15 O 1.52200 * 104.44634 * 179.97438 * 12 11 9 16 16 C 1.35978 * 114.00293 * 75.00289 * 15 12 11 17 17 C 1.38654 * 119.98532 * 89.99580 * 16 15 12 18 18 C 1.50700 * 119.95484 * 359.97438 * 17 16 15 19 19 O 1.42894 * 109.47141 * 74.99841 * 18 17 16 20 20 Si 1.86295 * 109.47196 * 194.99995 * 18 17 16 21 21 C 1.38267 * 120.09051 * 179.97438 * 17 16 15 22 22 C 1.38493 * 120.05172 * 0.02562 * 21 17 16 23 23 O 1.36074 * 120.01938 * 179.97438 * 22 21 17 24 24 C 1.42898 * 116.99940 * 359.97438 * 23 22 21 25 25 C 1.39181 * 119.96460 * 359.97438 * 22 21 17 26 26 O 1.35989 * 120.04582 * 180.02562 * 25 22 21 27 27 C 1.42896 * 116.99926 * 179.97438 * 26 25 22 28 28 C 1.38502 * 119.90583 * 359.72830 * 25 22 21 29 29 C 1.53784 * 113.61308 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.47368 * 60.00138 * 1 2 3 31 31 H 1.09004 * 109.47629 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47289 * 300.00290 * 1 2 3 33 33 H 1.08995 * 109.46787 * 239.99688 * 2 1 3 34 34 H 1.08999 * 109.46928 * 120.00440 * 2 1 3 35 35 H 1.09006 * 113.61307 * 25.43343 * 8 6 4 36 36 H 1.09007 * 113.61642 * 254.53100 * 8 6 4 37 37 H 1.09000 * 109.46865 * 42.48925 * 11 9 8 38 38 H 1.08998 * 109.47760 * 162.49266 * 11 9 8 39 39 H 1.09005 * 109.46784 * 314.99763 * 18 17 16 40 40 H 0.96701 * 114.00138 * 299.99936 * 19 18 17 41 41 H 1.48505 * 109.99929 * 59.99725 * 20 18 17 42 42 H 1.48495 * 110.00154 * 181.31916 * 20 18 17 43 43 H 1.07994 * 119.97640 * 180.02562 * 21 17 16 44 44 H 1.09001 * 109.47001 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47223 * 300.00107 * 24 23 22 46 46 H 1.08999 * 109.47490 * 60.00173 * 24 23 22 47 47 H 1.09000 * 109.47592 * 300.00278 * 27 26 25 48 48 H 1.09000 * 109.46991 * 60.00247 * 27 26 25 49 49 H 1.08997 * 109.46820 * 179.97438 * 27 26 25 50 50 H 1.08007 * 120.01943 * 180.29552 * 28 25 22 51 51 H 1.09004 * 113.61451 * 105.47354 * 29 6 4 52 52 H 1.08994 * 113.61477 * 334.56656 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9372 0.0000 7 1 3.4716 3.5819 -0.7555 8 6 3.9858 3.5775 1.3966 9 6 5.3561 4.1429 0.9876 10 9 5.2832 5.3933 0.3645 11 6 6.3978 4.0951 2.1071 12 16 6.0846 5.4412 3.2822 13 8 6.3534 6.7005 2.6811 14 8 4.8756 5.2117 3.9926 15 8 7.1730 5.2872 4.3349 16 6 8.4022 5.6985 3.9240 17 6 8.7938 7.0142 4.1190 18 6 7.8561 7.9874 4.7859 19 8 7.8153 7.7237 6.1897 20 14 8.4584 9.7266 4.4980 21 6 10.0434 7.4346 3.7025 22 6 10.9065 6.5420 3.0889 23 8 12.1360 6.9566 2.6787 24 6 12.4702 8.3261 2.9124 25 6 10.5157 5.2208 2.8920 26 8 11.3621 4.3429 2.2902 27 6 10.8947 3.0031 2.1214 28 6 9.2660 4.7999 3.3154 29 6 5.4583 2.9678 0.0001 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 4.0375 2.8514 2.2079 36 1 3.2286 4.3443 1.5612 37 1 6.3313 3.1382 2.6248 38 1 7.3947 4.2092 1.6812 39 1 6.8566 7.8748 4.3658 40 1 7.5100 6.8340 6.4141 41 1 8.5054 10.0133 3.0417 42 1 7.5600 10.6943 5.1774 43 1 10.3467 8.4597 3.8557 44 1 13.4746 8.5240 2.5382 45 1 11.7570 8.9676 2.3947 46 1 12.4337 8.5317 3.9822 47 1 10.6696 2.5712 3.0965 48 1 9.9930 3.0073 1.5090 49 1 11.6648 2.4090 1.6295 50 1 8.9627 3.7739 3.1678 51 1 5.8897 3.2425 -0.9626 52 1 5.9128 2.0750 0.4294 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8159502_16464788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:18:53 Heat of formation + Delta-G solvation = -269.485692 kcal Electronic energy + Delta-G solvation = -43602.304719 eV Core-core repulsion = 37772.156163 eV Total energy + Delta-G solvation = -5830.148556 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 435.131 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -49.27768 -42.82468 -41.91098 -41.14510 -39.65874 -39.41802 -38.71317 -38.41643 -37.60442 -37.56265 -36.93598 -32.92484 -32.56823 -31.97892 -31.19892 -28.75118 -28.13841 -27.37799 -27.01127 -26.62001 -24.27451 -23.90105 -23.30088 -22.45080 -21.77146 -20.93599 -20.10488 -19.62673 -19.40425 -19.02458 -18.89465 -18.34227 -18.04482 -17.79999 -17.71107 -17.65089 -17.24973 -17.19392 -16.50591 -16.43348 -16.35056 -16.23442 -16.10556 -15.80694 -15.57911 -15.49929 -15.39486 -14.76914 -14.70853 -14.66467 -14.37563 -14.25651 -14.16947 -13.90139 -13.75644 -13.72161 -13.62548 -13.57495 -13.46734 -13.38240 -13.15133 -13.02453 -12.99558 -12.67090 -12.58235 -12.52435 -12.45688 -12.28605 -12.15000 -12.02643 -11.94398 -11.61358 -11.58052 -11.54303 -11.49785 -11.32307 -10.17688 -9.12955 -5.08931 -1.43021 -0.28200 -0.18490 0.69948 0.93261 1.19983 1.50680 1.53550 1.87041 2.01805 2.09240 2.11697 2.17586 2.52538 2.55751 2.67484 2.83045 3.08804 3.12229 3.20208 3.32384 3.39893 3.58585 3.67044 3.73576 3.77408 3.83514 3.93852 3.99513 4.00892 4.05691 4.21548 4.26107 4.26785 4.27811 4.29209 4.34766 4.35887 4.37893 4.47687 4.50333 4.55017 4.66827 4.68025 4.77888 4.78486 4.79165 4.85927 4.88066 4.95407 5.09007 5.13455 5.36071 5.86783 6.30886 6.36035 6.54357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.477 3.523 5 O -0.527 6.527 6 C -0.109 4.109 7 H 0.149 0.851 8 C -0.156 4.156 9 C 0.093 3.907 10 F -0.185 7.185 11 C -0.657 4.657 12 S 2.576 3.424 13 O -0.963 6.963 14 O -0.948 6.948 15 O -0.654 6.654 16 C 0.051 3.949 17 C -0.086 4.086 18 C -0.119 4.119 19 O -0.537 6.537 20 Si 0.819 3.181 21 C -0.153 4.153 22 C 0.129 3.871 23 O -0.312 6.312 24 C -0.001 4.001 25 C 0.117 3.883 26 O -0.311 6.311 27 C 0.002 3.998 28 C -0.178 4.178 29 C -0.111 4.111 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.199 0.801 38 H 0.177 0.823 39 H 0.069 0.931 40 H 0.374 0.626 41 H -0.252 1.252 42 H -0.286 1.286 43 H 0.178 0.822 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.120 0.880 50 H 0.189 0.811 51 H 0.113 0.887 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.385 -3.851 -2.214 6.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.321 3.679 5 O -0.416 6.416 6 C -0.128 4.128 7 H 0.167 0.833 8 C -0.194 4.194 9 C 0.073 3.927 10 F -0.166 7.166 11 C -0.785 4.785 12 S 2.675 3.325 13 O -0.961 6.961 14 O -0.946 6.946 15 O -0.614 6.614 16 C 0.010 3.990 17 C -0.090 4.090 18 C -0.225 4.225 19 O -0.344 6.344 20 Si 0.718 3.282 21 C -0.171 4.171 22 C 0.081 3.919 23 O -0.225 6.225 24 C -0.094 4.094 25 C 0.070 3.930 26 O -0.224 6.224 27 C -0.092 4.092 28 C -0.198 4.198 29 C -0.149 4.149 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.125 0.875 37 H 0.217 0.783 38 H 0.195 0.805 39 H 0.086 0.914 40 H 0.223 0.777 41 H -0.177 1.177 42 H -0.213 1.213 43 H 0.194 0.806 44 H 0.142 0.858 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.138 0.862 50 H 0.206 0.794 51 H 0.132 0.868 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.563 -2.371 -2.176 5.584 hybrid contribution -1.820 -1.863 -0.367 2.630 sum 2.743 -4.234 -2.543 5.649 Atomic orbital electron populations 1.21844 0.90955 1.04318 1.03664 1.23297 0.96800 0.79050 1.02826 1.86534 1.24176 1.33835 1.83257 1.23573 0.80707 0.92266 0.71359 1.90667 1.60942 1.43645 1.46388 1.22577 0.97933 0.91017 1.01242 0.83303 1.23954 0.96039 1.02205 0.97160 1.21382 0.95758 0.82009 0.93576 1.92990 1.97084 1.42698 1.83802 1.31268 1.10709 1.23264 1.13285 1.05955 0.74291 0.76983 0.75258 1.93629 1.83341 1.40378 1.78800 1.93637 1.43616 1.86959 1.70410 1.85718 1.28937 1.85766 1.60936 1.17536 0.82546 0.93136 1.05832 1.20174 0.96205 0.93452 0.99129 1.26082 0.99947 1.12709 0.83749 1.86708 1.90050 1.37960 1.19638 0.92945 0.88108 0.68566 0.78623 1.20953 0.92535 1.01126 1.02510 1.18507 0.86580 0.90901 0.95923 1.86241 1.28308 1.31412 1.76501 1.23681 1.03953 0.78114 1.03698 1.18011 0.89547 0.88408 0.97010 1.86261 1.40548 1.21789 1.73807 1.23609 1.03390 0.78925 1.03243 1.21337 0.93075 1.01977 1.03444 1.23619 0.93139 0.97129 1.00999 0.91361 0.88411 0.91397 0.91029 0.90960 0.85336 0.87525 0.78312 0.80503 0.91392 0.77695 1.17701 1.21340 0.80583 0.85783 0.90900 0.89959 0.90757 0.90427 0.86164 0.79444 0.86828 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.59 10.29 71.98 0.74 1.33 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.43 16 3 O -0.36 -0.91 10.22 -51.44 -0.53 -1.44 16 4 C 0.48 0.98 7.48 71.24 0.53 1.51 16 5 O -0.53 -3.32 15.65 21.97 0.34 -2.98 16 6 C -0.11 0.30 4.24 -11.01 -0.05 0.25 16 7 H 0.15 -0.77 8.14 -2.39 -0.02 -0.79 16 8 C -0.16 0.35 6.90 31.12 0.21 0.56 16 9 C 0.09 -0.20 1.57 -10.25 -0.02 -0.22 16 10 F -0.19 -0.66 16.51 44.97 0.74 0.08 16 11 C -0.66 3.56 5.13 71.98 0.37 3.93 16 12 S 2.58 12.35 4.67 -56.49 -0.26 12.08 16 13 O -0.96 -10.13 13.79 -118.57 -1.64 -11.77 16 14 O -0.95 -9.87 17.96 -118.57 -2.13 -12.00 16 15 O -0.65 -2.07 9.03 -62.40 -0.56 -2.64 16 16 C 0.05 0.15 4.73 22.48 0.11 0.26 16 17 C -0.09 -0.42 4.68 -19.76 -0.09 -0.51 16 18 C -0.12 -0.88 2.18 71.24 0.16 -0.72 16 19 O -0.54 -3.78 12.65 -148.98 -1.89 -5.66 16 20 Si 0.82 2.60 30.17 68.60 2.07 4.67 16 21 C -0.15 -0.16 7.64 22.34 0.17 0.01 16 22 C 0.13 0.24 6.70 22.56 0.15 0.39 16 23 O -0.31 -0.37 10.28 -80.47 -0.83 -1.20 16 24 C 0.00 0.01 9.81 113.37 1.11 1.12 16 25 C 0.12 0.09 6.70 22.56 0.15 0.24 16 26 O -0.31 0.01 10.28 -79.50 -0.82 -0.81 16 27 C 0.00 -0.02 9.81 113.37 1.11 1.09 16 28 C -0.18 0.38 7.45 22.44 0.17 0.55 16 29 C -0.11 0.59 6.86 31.14 0.21 0.81 16 30 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 34 H 0.07 -0.04 8.13 -2.39 -0.02 -0.06 16 35 H 0.13 -0.62 7.99 -2.38 -0.02 -0.64 16 36 H 0.11 -0.17 8.14 -2.38 -0.02 -0.19 16 37 H 0.20 -2.64 8.05 -2.39 -0.02 -2.66 16 38 H 0.18 -1.85 6.63 -2.39 -0.02 -1.86 16 39 H 0.07 0.74 5.41 -2.38 -0.01 0.73 16 40 H 0.37 1.25 8.59 -74.06 -0.64 0.62 16 41 H -0.25 -1.21 7.11 99.48 0.71 -0.50 16 42 H -0.29 -2.64 7.11 99.48 0.71 -1.93 16 43 H 0.18 -0.82 3.35 -2.91 -0.01 -0.83 16 44 H 0.12 -1.25 8.14 -2.39 -0.02 -1.27 16 45 H 0.07 -0.65 7.66 -2.39 -0.02 -0.67 16 46 H 0.08 -0.84 7.66 -2.39 -0.02 -0.86 16 47 H 0.07 -0.84 7.65 -2.39 -0.02 -0.86 16 48 H 0.08 -0.99 7.67 -2.39 -0.02 -1.01 16 49 H 0.12 -1.32 8.14 -2.39 -0.02 -1.34 16 50 H 0.19 -1.96 5.76 -2.91 -0.02 -1.98 16 51 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 52 H 0.13 -0.98 7.39 -2.39 -0.02 -0.99 16 Total: 0.00 -30.25 439.02 0.40 -29.85 By element: Atomic # 1 Polarization: -19.62 SS G_CDS: 0.40 Total: -19.22 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.49 Total: 11.02 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -8.04 Total: -38.48 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.74 Total: 0.08 kcal Atomic # 14 Polarization: 2.60 SS G_CDS: 2.07 Total: 4.67 kcal Atomic # 16 Polarization: 12.35 SS G_CDS: -0.26 Total: 12.08 kcal Total: -30.25 0.40 -29.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159502_16464788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -239.632 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds