Wall clock time and date at job start Mon Mar 8 2021 15:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35989 * 117.00122 * 2 1 4 4 C 1.39137 * 120.04336 * 179.97438 * 3 2 1 5 5 O 1.36071 * 120.01797 * 0.02562 * 4 3 2 6 6 C 1.42901 * 117.00165 * 179.97438 * 5 4 3 7 7 C 1.38534 * 119.96290 * 179.97438 * 4 3 2 8 8 C 1.38228 * 120.05207 * 0.02562 * 7 4 3 9 9 C 1.50700 * 119.95419 * 179.97438 * 8 7 4 10 10 O 1.42893 * 109.47137 * 102.33212 * 9 8 7 11 11 Si 1.86304 * 109.47173 * 342.33258 * 9 8 7 12 12 C 1.38698 * 120.09181 * 359.96146 * 8 7 4 13 13 O 1.35971 * 119.98329 * 180.02562 * 12 8 7 14 14 S 1.52206 * 113.99627 * 259.61471 * 13 12 8 15 15 O 1.42106 * 104.27843 * 322.19881 * 14 13 12 16 16 O 1.42098 * 104.27820 * 194.34021 * 14 13 12 17 17 C 1.81403 * 104.44845 * 78.26907 * 14 13 12 18 18 C 1.53005 * 109.46967 * 179.97438 * 17 14 13 19 19 H 1.08996 * 112.85080 * 316.19699 * 18 17 14 20 20 C 1.54049 * 113.68734 * 87.47250 * 18 17 14 21 21 C 1.53780 * 86.98547 * 89.12633 * 20 18 17 22 22 O 1.42905 * 113.61062 * 270.83753 * 21 20 18 23 23 C 1.42905 * 113.99891 * 170.89572 * 22 21 20 24 24 C 1.53002 * 113.61768 * 140.02263 * 21 20 18 25 25 F 1.39889 * 109.47104 * 192.65537 * 24 21 20 26 26 F 1.39900 * 109.46756 * 312.65407 * 24 21 20 27 27 F 1.39902 * 109.47107 * 72.64992 * 24 21 20 28 28 C 1.53775 * 113.61173 * 185.00258 * 18 17 14 29 29 C 1.38538 * 120.04653 * 0.24382 * 3 2 1 30 30 H 1.09001 * 109.47199 * 300.00662 * 1 2 3 31 31 H 1.08997 * 109.46900 * 60.00040 * 1 2 3 32 32 H 1.09002 * 109.47310 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47422 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47258 * 300.00513 * 6 5 4 35 35 H 1.08998 * 109.46859 * 59.99889 * 6 5 4 36 36 H 1.07997 * 119.97389 * 180.02562 * 7 4 3 37 37 H 1.08999 * 109.47232 * 222.33203 * 9 8 7 38 38 H 0.96697 * 114.00343 * 65.24317 * 10 9 8 39 39 H 1.48501 * 110.00138 * 178.68420 * 11 9 8 40 40 H 1.48500 * 109.99909 * 300.00149 * 11 9 8 41 41 H 1.09006 * 109.46961 * 60.00076 * 17 14 13 42 42 H 1.09000 * 109.46943 * 300.00190 * 17 14 13 43 43 H 1.09007 * 113.69784 * 334.61030 * 20 18 17 44 44 H 1.08997 * 113.61478 * 203.63215 * 20 18 17 45 45 H 1.08996 * 109.46946 * 60.22541 * 23 22 21 46 46 H 1.09000 * 109.47061 * 300.23117 * 23 22 21 47 47 H 1.09004 * 109.47329 * 180.22901 * 23 22 21 48 48 H 1.08994 * 113.61750 * 156.25619 * 28 18 17 49 49 H 1.09003 * 113.69250 * 25.35936 * 28 18 17 50 50 H 1.07999 * 120.02640 * 0.03399 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4358 1.2855 0.0005 5 8 4.1781 0.1451 0.0005 6 6 5.5991 0.2959 0.0005 7 6 4.0630 2.5207 0.0000 8 6 3.3096 3.6796 -0.0005 9 6 3.9942 5.0222 -0.0005 10 8 3.9548 5.5769 -1.3168 11 14 5.7671 4.8152 0.5333 12 6 1.9245 3.6086 -0.0013 13 8 1.1855 4.7500 -0.0024 14 16 0.6379 5.1341 1.3648 15 8 0.2879 3.8937 1.9633 16 8 -0.3497 6.1163 1.0834 17 6 2.0503 5.8798 2.2249 18 6 1.6218 6.3132 3.6284 19 1 0.6538 6.8141 3.6396 20 6 1.7539 5.2016 4.6866 21 6 3.1910 5.6997 4.9128 22 8 4.1543 5.0734 4.0631 23 6 5.4522 5.6690 4.1178 24 6 3.6126 5.7081 6.3836 25 9 4.8007 6.4330 6.5240 26 9 2.6083 6.3050 7.1531 27 9 3.8140 4.3937 6.8184 28 6 2.7158 7.0695 4.4003 29 6 1.2928 2.3742 0.0051 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 6.0689 -0.6876 0.0001 34 1 5.9062 0.8453 -0.8894 35 1 5.9061 0.8452 0.8905 36 1 5.1415 2.5782 0.0000 37 1 3.4822 5.6911 0.6912 38 1 3.0639 5.7869 -1.6286 39 1 6.4620 6.1274 0.5070 40 1 5.8218 4.2389 1.9008 41 1 2.3977 6.7493 1.6668 42 1 2.8565 5.1502 2.2998 43 1 1.7008 4.1944 4.2731 44 1 1.1027 5.3407 5.5496 45 1 5.8375 5.6074 5.1356 46 1 5.3851 6.7146 3.8175 47 1 6.1239 5.1392 3.4423 48 1 2.3272 7.7184 5.1851 49 1 3.4394 7.5701 3.7569 50 1 0.2143 2.3190 0.0096 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8159502_17541816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:23:00 Heat of formation + Delta-G solvation = -313.534756 kcal Electronic energy + Delta-G solvation = -47417.887258 eV Core-core repulsion = 41093.828972 eV Total energy + Delta-G solvation = -6324.058286 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.113 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -51.32889 -48.88892 -48.72877 -42.74331 -41.65427 -41.08543 -39.64174 -38.53889 -38.41465 -37.61901 -37.26683 -36.90398 -32.67025 -31.91749 -31.19623 -28.93613 -28.56530 -28.31750 -28.01011 -27.18568 -26.54923 -24.20982 -23.89402 -23.16820 -21.92089 -20.99431 -20.12832 -19.91047 -19.61853 -19.46232 -19.40147 -18.94864 -18.70475 -18.43498 -17.87845 -17.50766 -17.36210 -17.20735 -16.82175 -16.46599 -16.34411 -16.31727 -16.15999 -15.89849 -15.78161 -15.69089 -15.62636 -15.49039 -15.38204 -15.25525 -15.03651 -14.94310 -14.81392 -14.65536 -14.44828 -14.27874 -13.94367 -13.90557 -13.64990 -13.55652 -13.44328 -13.40654 -13.36394 -13.24782 -13.22547 -12.78230 -12.62118 -12.53989 -12.41164 -12.34481 -12.27478 -12.12622 -11.90556 -11.66985 -11.47844 -11.34411 -11.00733 -10.08334 -9.09119 -5.14486 -1.25864 -0.15934 -0.12943 0.85218 1.10311 1.38795 1.41181 1.73653 1.82950 2.01443 2.06934 2.13462 2.32753 2.39005 2.45913 2.64694 2.68018 2.89540 2.99012 3.17275 3.18505 3.33148 3.34207 3.45331 3.57981 3.66429 3.74077 3.79274 3.88151 3.94642 3.98426 4.04734 4.10786 4.12899 4.14694 4.15509 4.16362 4.22976 4.28101 4.31459 4.36646 4.46416 4.47002 4.53343 4.53890 4.60831 4.61092 4.76947 4.81292 5.19529 5.45125 5.81397 6.29367 6.34601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.295 6.295 3 C 0.123 3.877 4 C 0.135 3.865 5 O -0.294 6.294 6 C 0.015 3.985 7 C -0.153 4.153 8 C -0.101 4.101 9 C -0.097 4.097 10 O -0.527 6.527 11 Si 0.722 3.278 12 C 0.069 3.931 13 O -0.658 6.658 14 S 2.588 3.412 15 O -0.940 6.940 16 O -0.920 6.920 17 C -0.651 4.651 18 C -0.090 4.090 19 H 0.112 0.888 20 C -0.123 4.123 21 C 0.042 3.958 22 O -0.332 6.332 23 C -0.010 4.010 24 C 0.439 3.561 25 F -0.179 7.179 26 F -0.173 7.173 27 F -0.172 7.172 28 C -0.138 4.138 29 C -0.141 4.141 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.155 0.845 37 H 0.075 0.925 38 H 0.372 0.628 39 H -0.246 1.246 40 H -0.223 1.223 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.102 0.898 48 H 0.116 0.884 49 H 0.096 0.904 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -0.857 -0.982 3.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.207 6.207 3 C 0.076 3.924 4 C 0.087 3.913 5 O -0.207 6.207 6 C -0.079 4.079 7 C -0.171 4.171 8 C -0.104 4.104 9 C -0.204 4.204 10 O -0.332 6.332 11 Si 0.619 3.381 12 C 0.027 3.973 13 O -0.616 6.616 14 S 2.683 3.317 15 O -0.938 6.938 16 O -0.918 6.918 17 C -0.776 4.776 18 C -0.109 4.109 19 H 0.130 0.870 20 C -0.160 4.160 21 C -0.001 4.001 22 O -0.250 6.250 23 C -0.105 4.105 24 C 0.384 3.616 25 F -0.161 7.161 26 F -0.155 7.155 27 F -0.153 7.153 28 C -0.176 4.176 29 C -0.162 4.162 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.172 0.828 37 H 0.093 0.907 38 H 0.220 0.780 39 H -0.170 1.170 40 H -0.148 1.148 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.129 0.871 44 H 0.143 0.857 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.120 0.880 48 H 0.135 0.865 49 H 0.115 0.885 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.310 -1.358 -0.745 4.580 hybrid contribution -0.972 1.610 0.818 2.051 sum 3.338 0.252 0.073 3.348 Atomic orbital electron populations 1.23282 0.77470 1.04966 1.02040 1.86235 1.21905 1.24368 1.88224 1.17900 0.88928 0.85192 1.00361 1.18287 0.88402 0.86230 0.98344 1.86272 1.19437 1.27174 1.87799 1.23311 0.77639 1.05043 1.01941 1.20658 1.00046 0.89699 1.06715 1.20035 0.91153 0.96978 1.02244 1.25881 1.14456 0.90787 0.89323 1.86759 1.33708 1.83394 1.29358 0.93230 0.76167 0.86549 0.82149 1.17287 0.88071 0.81235 1.10698 1.85733 1.71557 1.46793 1.57563 1.05801 0.76443 0.75546 0.73951 1.93667 1.81763 1.41238 1.77142 1.93677 1.54082 1.62416 1.81617 1.31088 1.22749 1.15144 1.08664 1.21738 1.00904 0.98169 0.90103 0.87007 1.23497 0.90334 1.01449 1.00738 1.23949 0.92607 0.98951 0.84592 1.88043 1.19864 1.55923 1.61183 1.23577 0.83609 0.99101 1.04257 1.21152 0.75098 0.74132 0.91226 1.93144 1.48020 1.78266 1.96628 1.93196 1.60634 1.83820 1.77800 1.93235 1.94830 1.35930 1.91321 1.23614 0.98380 0.94572 1.01065 1.21205 1.01702 0.89760 1.03486 0.91641 0.92265 0.87345 0.87289 0.91738 0.92020 0.82780 0.90732 0.78005 1.17005 1.14757 0.83462 0.82905 0.87147 0.85734 0.91204 0.92620 0.87985 0.86541 0.88504 0.82542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 9.81 101.05 0.99 0.98 16 2 O -0.29 -0.68 10.28 -34.29 -0.35 -1.03 16 3 C 0.12 0.27 6.70 -39.14 -0.26 0.01 16 4 C 0.13 0.17 6.70 -39.14 -0.26 -0.09 16 5 O -0.29 -0.30 10.28 -34.55 -0.36 -0.66 16 6 C 0.02 -0.05 9.81 101.05 0.99 0.94 16 7 C -0.15 0.07 7.64 -39.48 -0.30 -0.23 16 8 C -0.10 -0.03 4.85 -104.46 -0.51 -0.53 16 9 C -0.10 0.06 1.98 36.01 0.07 0.14 16 10 O -0.53 -0.02 12.63 -35.23 -0.45 -0.47 16 11 Si 0.72 -1.41 29.40 -169.99 -5.00 -6.41 16 12 C 0.07 0.10 4.96 -39.25 -0.19 -0.09 16 13 O -0.66 -0.81 9.26 -51.97 -0.48 -1.30 16 14 S 2.59 3.56 5.17 -107.50 -0.56 3.00 16 15 O -0.94 -2.64 15.49 -67.04 -1.04 -3.68 16 16 O -0.92 -4.03 18.09 -67.04 -1.21 -5.25 16 17 C -0.65 0.96 3.68 37.16 0.14 1.09 16 18 C -0.09 0.17 3.85 -89.67 -0.34 -0.17 16 19 H 0.11 -0.36 8.13 -51.93 -0.42 -0.79 16 20 C -0.12 0.16 6.94 -25.78 -0.18 -0.02 16 21 C 0.04 -0.03 0.80 -89.81 -0.07 -0.10 16 22 O -0.33 0.02 8.58 -35.23 -0.30 -0.28 16 23 C -0.01 0.01 9.83 101.05 0.99 1.01 16 24 C 0.44 0.30 2.54 37.16 0.09 0.39 16 25 F -0.18 -0.16 14.29 2.25 0.03 -0.13 16 26 F -0.17 -0.11 15.70 2.25 0.04 -0.07 16 27 F -0.17 -0.39 17.30 2.25 0.04 -0.35 16 28 C -0.14 0.34 6.74 -25.92 -0.17 0.16 16 29 C -0.14 -0.25 7.43 -39.31 -0.29 -0.55 16 30 H 0.06 -0.08 7.65 -51.93 -0.40 -0.47 16 31 H 0.06 -0.12 7.67 -51.93 -0.40 -0.52 16 32 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 33 H 0.11 -0.50 8.14 -51.93 -0.42 -0.92 16 34 H 0.06 -0.31 7.66 -51.93 -0.40 -0.71 16 35 H 0.06 -0.28 7.66 -51.93 -0.40 -0.68 16 36 H 0.16 -0.53 3.44 -52.49 -0.18 -0.71 16 37 H 0.08 -0.14 3.38 -51.93 -0.18 -0.32 16 38 H 0.37 -0.67 9.00 45.56 0.41 -0.26 16 39 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 40 H -0.22 0.48 5.20 56.52 0.29 0.77 16 41 H 0.15 -0.57 7.22 -51.92 -0.37 -0.94 16 42 H 0.15 -0.24 4.62 -51.92 -0.24 -0.48 16 43 H 0.11 -0.08 8.11 -51.93 -0.42 -0.50 16 44 H 0.12 -0.34 7.44 -51.93 -0.39 -0.73 16 45 H 0.07 -0.06 5.65 -51.93 -0.29 -0.35 16 46 H 0.06 -0.14 7.16 -51.93 -0.37 -0.51 16 47 H 0.10 -0.20 5.54 -51.93 -0.29 -0.49 16 48 H 0.12 -0.41 7.54 -51.93 -0.39 -0.80 16 49 H 0.10 -0.33 7.19 -51.93 -0.37 -0.70 16 50 H 0.16 0.11 6.06 -52.49 -0.32 -0.21 16 LS Contribution 410.45 15.07 6.19 6.19 Total: 0.00 -9.86 410.45 -8.33 -18.19 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: -5.57 Total: -10.69 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 0.69 Total: 2.93 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -4.19 Total: -12.66 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.11 Total: -0.55 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.00 Total: -6.41 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -0.56 Total: 3.00 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -9.86 -8.33 -18.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8159502_17541816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -295.347 kcal (2) G-P(sol) polarization free energy of solvation -9.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -305.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -313.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds