Wall clock time and date at job start Mon Mar 8 2021 13:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34228 * 116.99894 * 2 1 4 4 O 1.20824 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99764 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.85096 * 48.80119 * 5 3 2 7 7 C 1.53780 * 113.61379 * 180.02562 * 5 3 2 8 8 C 1.53774 * 87.08552 * 139.97749 * 7 5 3 9 9 H 1.09004 * 113.61771 * 89.19598 * 8 7 5 10 10 S 1.81395 * 113.61742 * 220.01667 * 8 7 5 11 11 O 1.42102 * 110.54273 * 67.02276 * 10 8 7 12 12 O 1.42097 * 110.54506 * 290.27064 * 10 8 7 13 13 O 1.52203 * 104.44996 * 178.64230 * 10 8 7 14 14 C 1.35919 * 113.99881 * 76.70708 * 13 10 8 15 15 C 1.38707 * 120.04589 * 80.26375 * 14 13 10 16 16 C 1.50700 * 120.02693 * 0.02562 * 15 14 13 17 17 C 1.38168 * 119.95308 * 180.25286 * 15 14 13 18 18 C 1.38322 * 120.04206 * 359.77794 * 17 15 14 19 19 Br 1.89103 * 119.95215 * 179.97438 * 18 17 15 20 20 C 1.38356 * 120.09345 * 359.94773 * 18 17 15 21 21 C 1.38123 * 120.04758 * 0.02858 * 20 18 17 22 22 C 1.50700 * 120.02169 * 180.02562 * 21 20 18 23 23 O 1.42895 * 109.47270 * 104.54197 * 22 21 20 24 24 Si 1.86297 * 109.47289 * 344.53451 * 22 21 20 25 25 C 1.53784 * 87.17103 * 334.60731 * 8 7 5 26 26 H 1.08995 * 109.46810 * 59.99887 * 1 2 3 27 27 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46621 * 299.99976 * 1 2 3 29 29 H 1.08997 * 113.61503 * 25.42394 * 7 5 3 30 30 H 1.09006 * 113.61084 * 254.52457 * 7 5 3 31 31 H 1.08998 * 109.47131 * 264.46440 * 16 15 14 32 32 H 1.09004 * 109.46749 * 24.45873 * 16 15 14 33 33 H 1.08994 * 109.47579 * 144.45769 * 16 15 14 34 34 H 1.08002 * 119.97701 * 179.74902 * 17 15 14 35 35 H 1.08008 * 119.97680 * 180.02562 * 20 18 17 36 36 H 1.09010 * 109.47023 * 224.53928 * 22 21 20 37 37 H 0.96697 * 114.00675 * 65.51880 * 23 22 21 38 38 H 1.48501 * 110.00513 * 300.00451 * 24 22 21 39 39 H 1.48506 * 109.99997 * 61.32519 * 24 22 21 40 40 H 1.09005 * 113.61505 * 139.93999 * 25 8 7 41 41 H 1.08993 * 113.61683 * 270.84027 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0234 0.6364 -0.7567 7 6 4.1078 2.7142 0.0001 8 6 5.1815 2.2263 0.9870 9 1 6.0817 1.8492 0.5016 10 16 5.5399 3.4095 2.3143 11 8 4.4174 3.5492 3.1744 12 8 6.2136 4.5491 1.7980 13 8 6.5857 2.7121 3.1726 14 6 7.8352 2.7211 2.6378 15 6 8.6327 3.8499 2.7552 16 6 8.1148 5.0675 3.4765 17 6 9.9007 3.8588 2.2063 18 6 10.3765 2.7415 1.5441 19 35 12.1119 2.7568 0.7931 20 6 9.5847 1.6126 1.4308 21 6 8.3167 1.5993 1.9786 22 6 7.4550 0.3692 1.8554 23 8 7.4245 -0.3184 3.1076 24 14 8.1597 -0.7542 0.5469 25 6 4.1937 1.1212 1.3969 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.4175 3.4401 0.4296 30 1 4.5106 3.0296 -0.9624 31 1 7.6961 5.7674 2.7534 32 1 7.3407 4.7690 4.1835 33 1 8.9328 5.5466 4.0143 34 1 10.5204 4.7389 2.2940 35 1 9.9582 0.7411 0.9137 36 1 6.4425 0.6613 1.5765 37 1 6.9918 0.1757 3.8173 38 1 8.1968 -0.0508 -0.7604 39 1 9.5280 -1.1852 0.9308 40 1 4.6657 0.1523 1.5605 41 1 3.5270 1.4107 2.2091 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8227984_13206342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:48:41 Heat of formation + Delta-G solvation = -141.078287 kcal Electronic energy + Delta-G solvation = -32074.373388 eV Core-core repulsion = 27483.406209 eV Total energy + Delta-G solvation = -4590.967179 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.005 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.89218 -42.00139 -39.95988 -39.69583 -38.49510 -38.00368 -37.39549 -37.36852 -34.54108 -33.53309 -30.67118 -30.05917 -28.66097 -28.23322 -27.50681 -27.00003 -24.18132 -23.51709 -22.79036 -21.76365 -20.95370 -20.09527 -19.45373 -19.03996 -18.64592 -18.49336 -17.94084 -17.59135 -17.43930 -16.80282 -16.65209 -16.54887 -15.85316 -15.67091 -15.37263 -14.97489 -14.89640 -14.70016 -14.57437 -14.24053 -14.08906 -14.01999 -13.92124 -13.81787 -13.73472 -13.57066 -13.38459 -13.20165 -13.15478 -13.05635 -12.95413 -12.85973 -12.39085 -12.18490 -12.02228 -11.85713 -11.77107 -11.67518 -11.49617 -11.42325 -11.30998 -10.30495 -10.03660 -5.11076 -1.39205 -0.51458 -0.36741 0.20928 0.70002 0.98731 1.02525 1.37506 1.56752 1.70289 1.83142 2.23283 2.35879 2.59659 2.80858 2.91055 2.95133 3.11109 3.23353 3.49484 3.52474 3.55743 3.63288 3.71928 3.77423 3.88905 3.92683 4.10590 4.12445 4.13744 4.20007 4.20940 4.28917 4.38067 4.39396 4.55342 4.56179 4.58068 4.61865 4.67105 4.82394 4.93837 5.25649 5.28164 6.26488 6.60803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.468 3.532 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.141 0.859 7 C -0.084 4.084 8 C -0.666 4.666 9 H 0.163 0.837 10 S 2.591 3.409 11 O -0.910 6.910 12 O -0.936 6.936 13 O -0.656 6.656 14 C 0.079 3.921 15 C -0.033 4.033 16 C -0.132 4.132 17 C -0.076 4.076 18 C -0.063 4.063 19 Br -0.022 7.022 20 C -0.090 4.090 21 C -0.098 4.098 22 C -0.106 4.106 23 O -0.522 6.522 24 Si 0.740 3.260 25 C -0.098 4.098 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.083 0.917 37 H 0.373 0.627 38 H -0.237 1.237 39 H -0.240 1.240 40 H 0.111 0.889 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -3.968 -2.565 4.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.310 3.690 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.159 0.841 7 C -0.122 4.122 8 C -0.771 4.771 9 H 0.180 0.820 10 S 2.686 3.314 11 O -0.908 6.908 12 O -0.935 6.935 13 O -0.614 6.614 14 C 0.037 3.963 15 C -0.036 4.036 16 C -0.189 4.189 17 C -0.096 4.096 18 C -0.143 4.143 19 Br 0.064 6.936 20 C -0.110 4.110 21 C -0.101 4.101 22 C -0.214 4.214 23 O -0.327 6.327 24 Si 0.636 3.364 25 C -0.136 4.136 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.221 0.779 38 H -0.161 1.161 39 H -0.164 1.164 40 H 0.130 0.870 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.600 -3.740 -3.165 5.154 hybrid contribution -0.774 1.022 0.695 1.458 sum 0.826 -2.718 -2.470 3.765 Atomic orbital electron populations 1.23371 0.75596 1.04200 1.02897 1.86504 1.23969 1.32863 1.83689 1.23390 0.91399 0.81729 0.72529 1.90716 1.66808 1.36412 1.44568 1.22448 0.88138 1.00023 1.00846 0.84119 1.22613 0.93668 0.96095 0.99838 1.32466 1.08336 1.16850 1.19495 0.81976 1.05885 0.74518 0.75449 0.75542 1.93693 1.50605 1.84557 1.61951 1.93676 1.70987 1.47339 1.81470 1.85692 1.27402 1.85431 1.62914 1.17698 0.82201 0.95480 1.00963 1.20167 0.92798 0.94842 0.95769 1.21176 1.02260 0.94943 1.00508 1.21064 0.94753 0.97887 0.95854 1.22002 0.93886 0.96718 1.01723 1.96874 1.15510 1.99024 1.82153 1.20854 0.92388 0.97928 0.99824 1.20441 0.96206 0.95325 0.98177 1.25927 1.01914 0.97068 0.96497 1.86765 1.82571 1.44563 1.18800 0.92950 0.82701 0.86355 0.74435 1.22851 0.95486 0.98345 0.96871 0.91621 0.87646 0.91564 0.87152 0.87434 0.86955 0.91410 0.89696 0.82720 0.83552 0.89944 0.77892 1.16069 1.16406 0.87022 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 101.05 1.07 1.02 16 2 O -0.35 -0.04 10.57 -39.25 -0.41 -0.45 16 3 C 0.47 0.35 7.49 36.01 0.27 0.62 16 4 O -0.50 -1.96 15.65 -18.75 -0.29 -2.25 16 5 C -0.09 0.24 4.26 -90.87 -0.39 -0.15 16 6 H 0.14 -0.76 8.14 -51.93 -0.42 -1.18 16 7 C -0.08 0.16 6.99 -25.92 -0.18 -0.02 16 8 C -0.67 1.46 2.86 -25.92 -0.07 1.39 16 9 H 0.16 -0.71 5.88 -51.93 -0.31 -1.01 16 10 S 2.59 2.97 4.92 -107.50 -0.53 2.44 16 11 O -0.91 -3.80 17.31 -67.04 -1.16 -4.96 16 12 O -0.94 -2.40 13.27 -67.04 -0.89 -3.29 16 13 O -0.66 -0.43 8.22 -51.81 -0.43 -0.86 16 14 C 0.08 0.07 4.92 -39.22 -0.19 -0.12 16 15 C -0.03 -0.03 5.16 -104.47 -0.54 -0.57 16 16 C -0.13 -0.04 8.40 36.01 0.30 0.26 16 17 C -0.08 0.00 9.46 -39.58 -0.37 -0.38 16 18 C -0.06 -0.03 6.22 -39.51 -0.25 -0.28 16 19 Br -0.02 -0.01 33.70 -68.01 -2.29 -2.30 16 20 C -0.09 -0.05 8.40 -39.58 -0.33 -0.38 16 21 C -0.10 -0.02 4.80 -104.48 -0.50 -0.52 16 22 C -0.11 0.17 1.88 36.01 0.07 0.24 16 23 O -0.52 0.42 12.63 -35.23 -0.45 -0.02 16 24 Si 0.74 -1.76 30.42 -169.99 -5.17 -6.94 16 25 C -0.10 0.29 6.66 -25.82 -0.17 0.11 16 26 H 0.07 -0.09 8.13 -51.93 -0.42 -0.51 16 27 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 28 H 0.07 -0.07 8.13 -51.93 -0.42 -0.50 16 29 H 0.11 -0.06 7.39 -51.93 -0.38 -0.44 16 30 H 0.11 -0.40 8.14 -51.93 -0.42 -0.83 16 31 H 0.11 0.09 6.72 -51.93 -0.35 -0.26 16 32 H 0.07 0.04 7.27 -51.93 -0.38 -0.33 16 33 H 0.08 -0.16 8.12 -51.93 -0.42 -0.58 16 34 H 0.16 -0.32 8.06 -52.49 -0.42 -0.74 16 35 H 0.15 -0.03 4.94 -52.48 -0.26 -0.29 16 36 H 0.08 -0.30 2.08 -51.92 -0.11 -0.41 16 37 H 0.37 -0.97 8.81 45.56 0.40 -0.57 16 38 H -0.24 0.44 7.11 56.52 0.40 0.85 16 39 H -0.24 -0.03 6.79 56.52 0.38 0.35 16 40 H 0.11 -0.62 6.98 -51.93 -0.36 -0.99 16 41 H 0.11 -0.23 7.41 -51.93 -0.38 -0.61 16 LS Contribution 363.00 15.07 5.47 5.47 Total: 0.00 -9.06 363.00 -11.75 -20.80 By element: Atomic # 1 Polarization: -4.56 SS G_CDS: -4.30 Total: -8.86 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.29 Total: 1.22 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -3.63 Total: -11.84 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: -5.17 Total: -6.94 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -0.53 Total: 2.44 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.29 Total: -2.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -9.06 -11.75 -20.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8227984_13206342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.277 kcal (2) G-P(sol) polarization free energy of solvation -9.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds