Wall clock time and date at job start Mon Mar 8 2021 13:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34228 * 116.99894 * 2 1 4 4 O 1.20824 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99764 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.85096 * 48.80119 * 5 3 2 7 7 C 1.53780 * 113.61379 * 180.02562 * 5 3 2 8 8 C 1.53774 * 87.08552 * 139.97749 * 7 5 3 9 9 H 1.09004 * 113.61771 * 89.19598 * 8 7 5 10 10 S 1.81395 * 113.61742 * 220.01667 * 8 7 5 11 11 O 1.42102 * 110.54273 * 67.02276 * 10 8 7 12 12 O 1.42097 * 110.54506 * 290.27064 * 10 8 7 13 13 O 1.52203 * 104.44996 * 178.64230 * 10 8 7 14 14 C 1.35919 * 113.99881 * 76.70708 * 13 10 8 15 15 C 1.38707 * 120.04589 * 80.26375 * 14 13 10 16 16 C 1.50700 * 120.02693 * 0.02562 * 15 14 13 17 17 C 1.38168 * 119.95308 * 180.25286 * 15 14 13 18 18 C 1.38322 * 120.04206 * 359.77794 * 17 15 14 19 19 Br 1.89103 * 119.95215 * 179.97438 * 18 17 15 20 20 C 1.38356 * 120.09345 * 359.94773 * 18 17 15 21 21 C 1.38123 * 120.04758 * 0.02858 * 20 18 17 22 22 C 1.50700 * 120.02169 * 180.02562 * 21 20 18 23 23 O 1.42895 * 109.47270 * 104.54197 * 22 21 20 24 24 Si 1.86297 * 109.47289 * 344.53451 * 22 21 20 25 25 C 1.53784 * 87.17103 * 334.60731 * 8 7 5 26 26 H 1.08995 * 109.46810 * 59.99887 * 1 2 3 27 27 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46621 * 299.99976 * 1 2 3 29 29 H 1.08997 * 113.61503 * 25.42394 * 7 5 3 30 30 H 1.09006 * 113.61084 * 254.52457 * 7 5 3 31 31 H 1.08998 * 109.47131 * 264.46440 * 16 15 14 32 32 H 1.09004 * 109.46749 * 24.45873 * 16 15 14 33 33 H 1.08994 * 109.47579 * 144.45769 * 16 15 14 34 34 H 1.08002 * 119.97701 * 179.74902 * 17 15 14 35 35 H 1.08008 * 119.97680 * 180.02562 * 20 18 17 36 36 H 1.09010 * 109.47023 * 224.53928 * 22 21 20 37 37 H 0.96697 * 114.00675 * 65.51880 * 23 22 21 38 38 H 1.48501 * 110.00513 * 300.00451 * 24 22 21 39 39 H 1.48506 * 109.99997 * 61.32519 * 24 22 21 40 40 H 1.09005 * 113.61505 * 139.93999 * 25 8 7 41 41 H 1.08993 * 113.61683 * 270.84027 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0234 0.6364 -0.7567 7 6 4.1078 2.7142 0.0001 8 6 5.1815 2.2263 0.9870 9 1 6.0817 1.8492 0.5016 10 16 5.5399 3.4095 2.3143 11 8 4.4174 3.5492 3.1744 12 8 6.2136 4.5491 1.7980 13 8 6.5857 2.7121 3.1726 14 6 7.8352 2.7211 2.6378 15 6 8.6327 3.8499 2.7552 16 6 8.1148 5.0675 3.4765 17 6 9.9007 3.8588 2.2063 18 6 10.3765 2.7415 1.5441 19 35 12.1119 2.7568 0.7931 20 6 9.5847 1.6126 1.4308 21 6 8.3167 1.5993 1.9786 22 6 7.4550 0.3692 1.8554 23 8 7.4245 -0.3184 3.1076 24 14 8.1597 -0.7542 0.5469 25 6 4.1937 1.1212 1.3969 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.4175 3.4401 0.4296 30 1 4.5106 3.0296 -0.9624 31 1 7.6961 5.7674 2.7534 32 1 7.3407 4.7690 4.1835 33 1 8.9328 5.5466 4.0143 34 1 10.5204 4.7389 2.2940 35 1 9.9582 0.7411 0.9137 36 1 6.4425 0.6613 1.5765 37 1 6.9918 0.1757 3.8173 38 1 8.1968 -0.0508 -0.7604 39 1 9.5280 -1.1852 0.9308 40 1 4.6657 0.1523 1.5605 41 1 3.5270 1.4107 2.2091 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8227984_13206342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:48:40 Heat of formation + Delta-G solvation = -140.373808 kcal Electronic energy + Delta-G solvation = -32074.342840 eV Core-core repulsion = 27483.406209 eV Total energy + Delta-G solvation = -4590.936631 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.005 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.90037 -41.96921 -39.90888 -39.65007 -38.61791 -37.93675 -37.50080 -37.43491 -34.52893 -33.51966 -30.66254 -29.97391 -28.65909 -28.11662 -27.35604 -26.86876 -24.19813 -23.48767 -22.75187 -21.77116 -20.83513 -20.09728 -19.46520 -19.02624 -18.58743 -18.49354 -17.93022 -17.52936 -17.41621 -16.79483 -16.62367 -16.46637 -15.82369 -15.61843 -15.33162 -14.94938 -14.85748 -14.69571 -14.52543 -14.21967 -13.99160 -13.96662 -13.87979 -13.83407 -13.74481 -13.57788 -13.42891 -13.20233 -13.09217 -13.04713 -12.94448 -12.78502 -12.25993 -12.01800 -11.95477 -11.84659 -11.68552 -11.65452 -11.46029 -11.36086 -11.21425 -10.28764 -10.05264 -4.89161 -1.43033 -0.52981 -0.36583 0.19987 0.66706 1.02005 1.16137 1.58636 1.66992 1.82651 1.91111 2.25307 2.41965 2.67065 2.88116 2.98016 3.12335 3.13652 3.42956 3.50961 3.60321 3.65195 3.70343 3.82237 3.86443 3.97433 4.16062 4.23359 4.28136 4.29538 4.30670 4.34171 4.39211 4.53440 4.58126 4.58865 4.63714 4.68435 4.72598 4.82955 4.89433 4.93444 5.25278 5.31778 6.46314 6.60947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.354 6.354 3 C 0.464 3.536 4 O -0.540 6.540 5 C -0.088 4.088 6 H 0.182 0.818 7 C -0.096 4.096 8 C -0.647 4.647 9 H 0.191 0.809 10 S 2.584 3.416 11 O -0.952 6.952 12 O -0.958 6.958 13 O -0.655 6.655 14 C 0.068 3.932 15 C -0.046 4.046 16 C -0.136 4.136 17 C -0.076 4.076 18 C -0.069 4.069 19 Br -0.022 7.022 20 C -0.100 4.100 21 C -0.099 4.099 22 C -0.117 4.117 23 O -0.531 6.531 24 Si 0.795 3.205 25 C -0.102 4.102 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.172 0.828 35 H 0.152 0.848 36 H 0.102 0.898 37 H 0.379 0.621 38 H -0.236 1.236 39 H -0.280 1.280 40 H 0.147 0.853 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 -5.512 -3.701 6.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.308 3.692 4 O -0.429 6.429 5 C -0.107 4.107 6 H 0.199 0.801 7 C -0.134 4.134 8 C -0.756 4.756 9 H 0.209 0.791 10 S 2.684 3.316 11 O -0.950 6.950 12 O -0.956 6.956 13 O -0.613 6.613 14 C 0.026 3.974 15 C -0.049 4.049 16 C -0.193 4.193 17 C -0.095 4.095 18 C -0.149 4.149 19 Br 0.065 6.935 20 C -0.119 4.119 21 C -0.103 4.103 22 C -0.224 4.224 23 O -0.338 6.338 24 Si 0.693 3.307 25 C -0.140 4.140 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.190 0.810 35 H 0.169 0.831 36 H 0.120 0.880 37 H 0.229 0.771 38 H -0.160 1.160 39 H -0.207 1.207 40 H 0.165 0.835 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.152 -5.256 -4.260 7.100 hybrid contribution -0.930 1.470 1.059 2.036 sum 1.222 -3.787 -3.202 5.107 Atomic orbital electron populations 1.23557 0.75055 1.05777 1.02388 1.86508 1.24644 1.32528 1.83296 1.24078 0.92672 0.81248 0.71180 1.90702 1.67968 1.37690 1.46577 1.22668 0.85951 1.00060 1.02042 0.80076 1.22754 0.93455 0.96496 1.00736 1.32347 1.09628 1.15871 1.17734 0.79141 1.05865 0.73757 0.76045 0.75947 1.93641 1.51907 1.85567 1.63871 1.93644 1.71128 1.49129 1.81730 1.85657 1.27401 1.85166 1.63115 1.17877 0.82172 0.95947 1.01413 1.20350 0.93299 0.95114 0.96177 1.21215 1.02770 0.94931 1.00346 1.21260 0.94589 0.98407 0.95281 1.22102 0.93970 0.96974 1.01889 1.96870 1.15490 1.99030 1.82146 1.21020 0.92620 0.98142 1.00121 1.20630 0.96322 0.95670 0.97631 1.26218 1.02822 0.96644 0.96684 1.86739 1.82795 1.44926 1.19313 0.92415 0.80326 0.84569 0.73390 1.23021 0.95047 0.99516 0.96385 0.91977 0.85036 0.92328 0.89235 0.85132 0.87717 0.92297 0.87672 0.81020 0.83105 0.88019 0.77124 1.15986 1.20703 0.83522 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.12 16 2 O -0.35 0.17 10.57 -51.40 -0.54 -0.37 16 3 C 0.46 0.59 7.49 71.24 0.53 1.13 16 4 O -0.54 -4.91 15.65 21.97 0.34 -4.56 16 5 C -0.09 0.59 4.26 -10.95 -0.05 0.55 16 6 H 0.18 -2.69 8.14 -2.39 -0.02 -2.71 16 7 C -0.10 0.42 6.99 31.12 0.22 0.64 16 8 C -0.65 3.51 2.86 31.12 0.09 3.60 16 9 H 0.19 -2.15 5.88 -2.38 -0.01 -2.17 16 10 S 2.58 8.59 4.92 -56.49 -0.28 8.31 16 11 O -0.95 -10.09 17.31 -118.57 -2.05 -12.14 16 12 O -0.96 -6.25 13.27 -118.57 -1.57 -7.82 16 13 O -0.65 -1.31 8.22 -61.73 -0.51 -1.82 16 14 C 0.07 0.14 4.92 22.50 0.11 0.25 16 15 C -0.05 -0.11 5.16 -19.77 -0.10 -0.21 16 16 C -0.14 -0.22 8.40 71.24 0.60 0.37 16 17 C -0.08 0.00 9.46 22.27 0.21 0.21 16 18 C -0.07 -0.06 6.22 22.32 0.14 0.08 16 19 Br -0.02 -0.01 33.70 -20.37 -0.69 -0.69 16 20 C -0.10 -0.06 8.40 22.27 0.19 0.12 16 21 C -0.10 0.02 4.80 -19.77 -0.09 -0.07 16 22 C -0.12 0.54 1.88 71.24 0.13 0.68 16 23 O -0.53 1.41 12.63 -148.98 -1.88 -0.47 16 24 Si 0.80 -5.11 30.42 68.60 2.09 -3.03 16 25 C -0.10 0.74 6.66 31.18 0.21 0.95 16 26 H 0.06 -0.13 8.13 -2.39 -0.02 -0.15 16 27 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 28 H 0.06 -0.08 8.13 -2.38 -0.02 -0.10 16 29 H 0.09 0.03 7.39 -2.39 -0.02 0.01 16 30 H 0.13 -1.19 8.14 -2.38 -0.02 -1.21 16 31 H 0.10 0.33 6.72 -2.39 -0.02 0.31 16 32 H 0.06 0.18 7.27 -2.38 -0.02 0.17 16 33 H 0.10 -0.35 8.12 -2.39 -0.02 -0.37 16 34 H 0.17 -0.76 8.06 -2.91 -0.02 -0.78 16 35 H 0.15 -0.11 4.94 -2.91 -0.01 -0.12 16 36 H 0.10 -0.96 2.08 -2.38 0.00 -0.97 16 37 H 0.38 -2.19 8.81 -74.06 -0.65 -2.84 16 38 H -0.24 1.50 7.11 99.48 0.71 2.21 16 39 H -0.28 -0.07 6.79 99.48 0.68 0.60 16 40 H 0.15 -2.11 6.98 -2.38 -0.02 -2.13 16 41 H 0.10 -0.37 7.41 -2.39 -0.02 -0.39 16 Total: 0.00 -23.73 363.00 -1.24 -24.97 By element: Atomic # 1 Polarization: -12.26 SS G_CDS: 0.47 Total: -11.79 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 3.38 Total: 9.42 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -6.21 Total: -27.19 kcal Atomic # 14 Polarization: -5.11 SS G_CDS: 2.09 Total: -3.03 kcal Atomic # 16 Polarization: 8.59 SS G_CDS: -0.28 Total: 8.31 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.69 Total: -0.69 kcal Total: -23.73 -1.24 -24.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8227984_13206342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.408 kcal (2) G-P(sol) polarization free energy of solvation -23.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds