Wall clock time and date at job start Mon Mar 8 2021 11:28:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38119 * 120.02302 * 2 1
4 4 C 1.38362 * 120.04882 * 179.97438 * 3 2 1
5 5 Br 1.89099 * 119.95903 * 179.97438 * 4 3 2
6 6 C 1.38330 * 120.09003 * 359.79021 * 4 3 2
7 7 C 1.38160 * 120.04055 * 0.46697 * 6 4 3
8 8 C 1.50705 * 120.02050 * 179.79057 * 7 6 4
9 9 O 1.42906 * 109.47133 * 103.06208 * 8 7 6
10 10 Si 1.86302 * 109.46941 * 343.06361 * 8 7 6
11 11 H 1.48499 * 109.47334 * 60.00042 * 10 8 7
12 12 H 1.48500 * 109.47286 * 299.99862 * 10 8 7
13 13 H 1.48497 * 109.46878 * 179.97438 * 10 8 7
14 14 C 1.38703 * 119.95667 * 359.51261 * 7 6 4
15 15 O 1.35923 * 120.04640 * 180.23231 * 14 7 6
16 16 S 1.52201 * 113.99703 * 89.70622 * 15 14 7
17 17 O 1.42101 * 104.27591 * 196.48144 * 16 15 14
18 18 O 1.42103 * 104.27733 * 324.33318 * 16 15 14
19 19 C 1.81398 * 104.45234 * 80.40572 * 16 15 14
20 20 C 1.53001 * 109.47190 * 171.61183 * 19 16 15
21 21 C 1.53001 * 109.46956 * 180.02562 * 20 19 16
22 22 Si 1.86293 * 109.46926 * 180.02562 * 21 20 19
23 23 C 1.86298 * 109.47751 * 59.99630 * 22 21 20
24 24 C 1.86302 * 109.47163 * 179.97438 * 22 21 20
25 25 C 1.86302 * 109.46893 * 299.99420 * 22 21 20
26 26 H 1.09007 * 109.46666 * 276.79579 * 1 2 3
27 27 H 1.08995 * 109.47544 * 36.79521 * 1 2 3
28 28 H 1.09003 * 109.47274 * 156.79972 * 1 2 3
29 29 H 1.08006 * 119.97925 * 359.97438 * 3 2 1
30 30 H 1.07992 * 119.98015 * 180.25116 * 6 4 3
31 31 H 1.08999 * 109.47413 * 223.06373 * 8 7 6
32 32 H 0.96692 * 113.99792 * 179.97438 * 9 8 7
33 33 H 1.09000 * 109.47148 * 291.61494 * 19 16 15
34 34 H 1.09001 * 109.46925 * 51.61112 * 19 16 15
35 35 H 1.08994 * 109.46956 * 300.00082 * 20 19 16
36 36 H 1.08998 * 109.46799 * 60.00375 * 20 19 16
37 37 H 1.09007 * 109.46455 * 299.99606 * 21 20 19
38 38 H 1.09001 * 109.47338 * 59.99820 * 21 20 19
39 39 H 1.09000 * 109.46881 * 59.99915 * 23 22 21
40 40 H 1.08993 * 109.47297 * 179.97438 * 23 22 21
41 41 H 1.09005 * 109.46505 * 300.00389 * 23 22 21
42 42 H 1.09001 * 109.47047 * 59.99429 * 24 22 21
43 43 H 1.09002 * 109.47423 * 179.97438 * 24 22 21
44 44 H 1.09000 * 109.47024 * 299.99812 * 24 22 21
45 45 H 1.08994 * 109.47174 * 60.00508 * 25 22 21
46 46 H 1.09002 * 109.47094 * 180.02562 * 25 22 21
47 47 H 1.09001 * 109.47109 * 300.00443 * 25 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1981 1.1959 0.0000
4 6 3.5817 1.1965 0.0005
5 35 4.5253 2.8352 -0.0002
6 6 4.2758 -0.0001 0.0055
7 6 3.5883 -1.1985 0.0001
8 6 4.3449 -2.5018 0.0007
9 8 4.3151 -3.0693 1.3119
10 14 6.1120 -2.1942 -0.5028
11 1 6.7440 -1.2544 0.4577
12 1 6.1430 -1.6044 -1.8654
13 1 6.8577 -3.4783 -0.5016
14 6 2.2012 -1.2012 0.0000
15 8 1.5230 -2.3792 -0.0005
16 16 1.2203 -2.9197 1.3897
17 8 0.8848 -4.2830 1.1702
18 8 2.3584 -2.5603 2.1610
19 6 -0.2368 -1.9848 1.9315
20 6 -0.7695 -2.5814 3.2358
21 6 -1.9989 -1.7933 3.6924
22 14 -2.6471 -2.5192 5.2809
23 6 -1.3265 -2.4243 6.5916
24 6 -4.1435 -1.5591 5.8374
25 6 -3.1192 -4.2998 5.0028
26 1 -0.3633 0.1216 1.0205
27 1 -0.3634 0.8229 -0.6155
28 1 -0.3634 -0.9446 -0.4048
29 1 1.6581 2.1312 -0.0004
30 1 5.3557 0.0025 0.0100
31 1 3.8811 -3.1916 -0.7044
32 1 4.7835 -3.9119 1.3864
33 1 0.0398 -0.9432 2.0947
34 1 -1.0094 -2.0397 1.1646
35 1 -1.0462 -3.6230 3.0726
36 1 0.0031 -2.5265 4.0026
37 1 -1.7225 -0.7515 3.8555
38 1 -2.7714 -1.8484 2.9254
39 1 -1.0504 -1.3825 6.7543
40 1 -1.7060 -2.8486 7.5211
41 1 -0.4508 -2.9858 6.2662
42 1 -4.9163 -1.6142 5.0706
43 1 -4.5231 -1.9840 6.7666
44 1 -3.8670 -0.5174 6.0002
45 1 -2.2435 -4.8613 4.6775
46 1 -3.4989 -4.7245 5.9321
47 1 -3.8918 -4.3553 4.2359
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_40_8227984_14927650.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 11:28:54
Heat of formation + Delta-G solvation = -138.768687 kcal
Electronic energy + Delta-G solvation = -30083.976083 eV
Core-core repulsion = 25951.181380 eV
Total energy + Delta-G solvation = -4132.794703 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 424.038 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.60795 -39.57828 -38.25862 -37.84222 -37.05586 -36.03108 -34.39973 -33.40889
-30.55894 -29.65377 -28.92976 -28.29809 -28.29083 -27.73513 -27.16686 -23.97067
-22.87028 -22.44518 -21.32242 -19.56367 -18.93778 -18.69051 -18.33284 -17.29245
-17.12794 -16.57444 -16.12546 -15.77471 -15.47147 -15.21547 -15.10108 -14.65794
-14.53341 -14.45556 -14.14908 -14.06967 -13.93859 -13.76585 -13.74400 -13.62160
-13.48313 -13.29323 -13.22897 -13.15843 -13.07564 -13.05461 -13.00602 -12.96902
-12.88114 -12.70892 -12.21401 -12.13023 -11.90234 -11.78723 -11.71974 -11.57679
-11.44340 -10.69417 -10.67077 -10.40875 -10.33599 -10.13535 -9.88217 -1.13106
-0.29507 -0.20126 0.34206 0.99234 1.04792 1.36484 1.42406 1.78814
1.93959 1.98870 2.02061 2.03967 2.62539 2.76400 2.93534 3.11524
3.30852 3.47619 3.66844 3.70207 3.76943 3.84887 3.89050 4.08123
4.16993 4.19390 4.39362 4.43023 4.57056 4.63906 4.69076 4.77311
4.80186 4.82395 4.84011 4.85350 4.87529 4.88640 4.89165 4.90683
4.95584 5.06506 5.13324 5.40450 5.48329 5.61523 5.67648 5.68179
6.74182
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.078 4.078
3 C -0.068 4.068
4 C -0.076 4.076
5 Br -0.026 7.026
6 C -0.100 4.100
7 C -0.055 4.055
8 C -0.121 4.121
9 O -0.524 6.524
10 Si 0.974 3.026
11 H -0.250 1.250
12 H -0.247 1.247
13 H -0.245 1.245
14 C 0.086 3.914
15 O -0.668 6.668
16 S 2.562 3.438
17 O -0.973 6.973
18 O -0.926 6.926
19 C -0.643 4.643
20 C -0.117 4.117
21 C -0.408 4.408
22 Si 1.067 2.933
23 C -0.474 4.474
24 C -0.462 4.462
25 C -0.476 4.476
26 H 0.115 0.885
27 H 0.112 0.888
28 H 0.082 0.918
29 H 0.181 0.819
30 H 0.150 0.850
31 H 0.084 0.916
32 H 0.386 0.614
33 H 0.165 0.835
34 H 0.165 0.835
35 H 0.081 0.919
36 H 0.082 0.918
37 H 0.096 0.904
38 H 0.095 0.905
39 H 0.071 0.929
40 H 0.064 0.936
41 H 0.065 0.935
42 H 0.071 0.929
43 H 0.063 0.937
44 H 0.071 0.929
45 H 0.065 0.935
46 H 0.064 0.936
47 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.651 4.555 -0.707 5.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.081 4.081
3 C -0.087 4.087
4 C -0.156 4.156
5 Br 0.060 6.940
6 C -0.120 4.120
7 C -0.058 4.058
8 C -0.230 4.230
9 O -0.331 6.331
10 Si 0.795 3.205
11 H -0.174 1.174
12 H -0.170 1.170
13 H -0.168 1.168
14 C 0.044 3.956
15 O -0.626 6.626
16 S 2.662 3.338
17 O -0.971 6.971
18 O -0.924 6.924
19 C -0.772 4.772
20 C -0.156 4.156
21 C -0.494 4.494
22 Si 1.260 2.740
23 C -0.580 4.580
24 C -0.568 4.568
25 C -0.581 4.581
26 H 0.133 0.867
27 H 0.130 0.870
28 H 0.101 0.899
29 H 0.198 0.802
30 H 0.167 0.833
31 H 0.102 0.898
32 H 0.235 0.765
33 H 0.183 0.817
34 H 0.183 0.817
35 H 0.099 0.901
36 H 0.101 0.899
37 H 0.115 0.885
38 H 0.114 0.886
39 H 0.091 0.909
40 H 0.083 0.917
41 H 0.084 0.916
42 H 0.090 0.910
43 H 0.082 0.918
44 H 0.091 0.909
45 H 0.084 0.916
46 H 0.084 0.916
47 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -2.284 5.223 -1.035 5.794
hybrid contribution -0.637 -1.180 0.124 1.347
sum -2.921 4.043 -0.910 5.070
Atomic orbital electron populations
1.21702 0.87044 1.06255 1.06086 1.20362 0.98955 0.90003 0.98814
1.21301 0.91300 0.99177 0.96966 1.22040 0.95724 0.92316 1.05558
1.96846 1.75156 1.24566 1.97383 1.21117 1.01289 0.90040 0.99549
1.19553 0.92262 0.95181 0.98832 1.25061 1.12479 0.94582 0.90851
1.86968 1.78899 1.41819 1.25401 0.85357 0.73136 0.81802 0.80250
1.17363 1.17023 1.16814 1.17907 0.89605 0.81207 1.06917 1.85668
1.75508 1.43141 1.58328 1.06418 0.77945 0.75673 0.73719 1.93580
1.86414 1.33622 1.83519 1.93780 1.45421 1.83317 1.69928 1.31364
1.19877 1.15942 1.10042 1.21172 1.00208 1.00814 0.93403 1.26192
1.00711 1.06057 1.16424 0.78320 0.65318 0.65047 0.65353 1.26441
1.13514 1.04615 1.13416 1.26259 1.15592 1.09139 1.05857 1.26459
1.05582 1.21300 1.04768 0.86668 0.86968 0.89921 0.80210 0.83255
0.89820 0.76534 0.81712 0.81717 0.90053 0.89938 0.88512 0.88585
0.90937 0.91652 0.91572 0.91004 0.91759 0.90950 0.91617 0.91641
0.90989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 1.42 7.84 71.24 0.56 1.98 16
2 C -0.08 0.17 5.61 -19.77 -0.11 0.06 16
3 C -0.07 0.21 9.46 22.27 0.21 0.42 16
4 C -0.08 -0.06 6.22 22.32 0.14 0.07 16
5 Br -0.03 0.00 33.70 -20.37 -0.69 -0.69 16
6 C -0.10 -0.35 8.39 22.27 0.19 -0.17 16
7 C -0.06 -0.31 4.83 -19.77 -0.10 -0.40 16
8 C -0.12 -0.54 2.29 71.24 0.16 -0.37 16
9 O -0.52 -3.48 9.10 -125.27 -1.14 -4.62 16
10 Si 0.97 0.99 25.57 68.60 1.75 2.74 16
11 H -0.25 -0.55 6.67 99.48 0.66 0.11 16
12 H -0.25 -0.26 7.11 99.48 0.71 0.44 16
13 H -0.24 -0.09 7.11 99.48 0.71 0.62 16
14 C 0.09 0.34 4.69 22.50 0.11 0.45 16
15 O -0.67 -3.40 8.38 -61.78 -0.52 -3.92 16
16 S 2.56 14.12 5.08 -56.49 -0.29 13.83 16
17 O -0.97 -12.57 18.09 -118.57 -2.15 -14.72 16
18 O -0.93 -9.04 12.53 -114.88 -1.44 -10.48 16
19 C -0.64 2.92 3.90 71.98 0.28 3.20 16
20 C -0.12 0.45 4.59 30.60 0.14 0.59 16
21 C -0.41 3.21 4.45 71.98 0.32 3.53 16
22 Si 1.07 -7.26 12.19 68.60 0.84 -6.43 16
23 C -0.47 1.42 8.65 113.37 0.98 2.40 16
24 C -0.46 2.25 8.65 113.37 0.98 3.23 16
25 C -0.48 1.29 8.65 113.37 0.98 2.27 16
26 H 0.12 -1.54 5.53 -2.38 -0.01 -1.56 16
27 H 0.11 -1.44 8.13 -2.39 -0.02 -1.46 16
28 H 0.08 -0.75 6.22 -2.39 -0.01 -0.76 16
29 H 0.18 -1.67 8.06 -2.91 -0.02 -1.70 16
30 H 0.15 0.28 4.92 -2.91 -0.01 0.27 16
31 H 0.08 0.22 7.78 -2.39 -0.02 0.20 16
32 H 0.39 -0.59 8.74 -74.06 -0.65 -1.23 16
33 H 0.17 -1.53 5.37 -2.39 -0.01 -1.54 16
34 H 0.16 -1.61 7.01 -2.39 -0.02 -1.63 16
35 H 0.08 -0.28 7.79 -2.39 -0.02 -0.30 16
36 H 0.08 -0.36 7.79 -2.39 -0.02 -0.38 16
37 H 0.10 -1.00 7.96 -2.38 -0.02 -1.02 16
38 H 0.10 -0.97 7.96 -2.39 -0.02 -0.99 16
39 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16
40 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16
41 H 0.07 -0.14 7.79 -2.38 -0.02 -0.16 16
42 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16
43 H 0.06 -0.22 7.96 -2.39 -0.02 -0.24 16
44 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16
45 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16
46 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16
47 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16
Total: 0.00 -22.36 398.35 2.27 -20.09
By element:
Atomic # 1 Polarization: -14.12 SS G_CDS: 1.05 Total: -13.07 kcal
Atomic # 6 Polarization: 12.43 SS G_CDS: 4.84 Total: 17.27 kcal
Atomic # 8 Polarization: -28.50 SS G_CDS: -5.24 Total: -33.74 kcal
Atomic # 14 Polarization: -6.27 SS G_CDS: 2.59 Total: -3.68 kcal
Atomic # 16 Polarization: 14.12 SS G_CDS: -0.29 Total: 13.83 kcal
Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.69 kcal
Total: -22.36 2.27 -20.09 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_40_8227984_14927650.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.680 kcal
(2) G-P(sol) polarization free energy of solvation -22.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.089 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.769 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds