Wall clock time and date at job start Mon Mar 8 2021 12:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45198 * 109.47394 * 2 1 4 4 C 1.34228 * 117.00522 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99817 * 179.72034 * 4 3 2 7 7 H 1.08993 * 109.47783 * 300.27494 * 6 4 3 8 8 C 1.53002 * 109.47121 * 60.28168 * 6 4 3 9 9 C 1.52992 * 109.47301 * 179.97438 * 8 6 4 10 10 C 1.53004 * 109.47200 * 299.99923 * 9 8 6 11 11 F 1.39902 * 109.46888 * 299.99812 * 10 9 8 12 12 C 1.53006 * 109.47051 * 180.02562 * 10 9 8 13 13 S 1.81398 * 109.47205 * 59.99978 * 12 10 9 14 14 O 1.42101 * 110.54128 * 285.36912 * 13 12 10 15 15 O 1.42098 * 110.54267 * 62.12323 * 13 12 10 16 16 O 1.52201 * 104.44666 * 173.74783 * 13 12 10 17 17 C 1.35917 * 113.99909 * 76.54409 * 16 13 12 18 18 C 1.38709 * 120.04535 * 86.74686 * 17 16 13 19 19 C 1.50697 * 120.02513 * 359.97438 * 18 17 16 20 20 O 1.42903 * 109.46987 * 74.99865 * 19 18 17 21 21 Si 1.86293 * 109.47389 * 194.99863 * 19 18 17 22 22 C 1.38164 * 119.95078 * 180.02562 * 18 17 16 23 23 C 1.38324 * 120.04676 * 359.97438 * 22 18 17 24 24 Br 1.89100 * 119.95268 * 179.97438 * 23 22 18 25 25 C 1.38362 * 120.09320 * 0.02562 * 23 22 18 26 26 C 1.38124 * 120.04396 * 359.71955 * 25 23 22 27 27 C 1.50699 * 120.02291 * 180.27525 * 26 25 23 28 28 C 1.52998 * 109.47257 * 59.99997 * 10 9 8 29 29 C 1.53001 * 109.46798 * 180.27402 * 6 4 3 30 30 H 1.09002 * 109.47505 * 299.99593 * 1 2 3 31 31 H 1.08995 * 109.47129 * 60.00208 * 1 2 3 32 32 H 1.09007 * 109.47203 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47729 * 239.99667 * 2 1 3 34 34 H 1.09001 * 109.47352 * 120.00165 * 2 1 3 35 35 H 1.09000 * 109.47258 * 299.99854 * 8 6 4 36 36 H 1.09009 * 109.47360 * 59.99441 * 8 6 4 37 37 H 1.08998 * 109.47352 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.47437 * 59.99935 * 9 8 6 39 39 H 1.08997 * 109.47024 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.46920 * 300.00041 * 12 10 9 41 41 H 1.09001 * 109.47311 * 315.00701 * 19 18 17 42 42 H 0.96703 * 114.00296 * 300.00289 * 20 19 18 43 43 H 1.48497 * 110.00393 * 298.68467 * 21 19 18 44 44 H 1.48505 * 109.99733 * 60.00179 * 21 19 18 45 45 H 1.08001 * 119.97456 * 179.97438 * 22 18 17 46 46 H 1.07992 * 119.97853 * 180.02562 * 25 23 22 47 47 H 1.08997 * 109.47312 * 276.41043 * 27 26 25 48 48 H 1.08998 * 109.47167 * 36.40749 * 27 26 25 49 49 H 1.09000 * 109.47202 * 156.40947 * 27 26 25 50 50 H 1.08997 * 109.47203 * 180.02562 * 28 10 9 51 51 H 1.09001 * 109.47026 * 59.99768 * 28 10 9 52 52 H 1.09001 * 109.47632 * 300.00519 * 29 6 4 53 53 H 1.09005 * 109.46729 * 60.00735 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 -0.0058 7 1 3.5817 3.4668 -0.8962 8 6 3.4533 3.6883 1.2428 9 6 4.0385 5.1019 1.2367 10 6 5.5664 5.0214 1.2320 11 9 6.0010 4.3416 2.3749 12 6 6.1516 6.4351 1.2266 13 16 5.5975 7.3245 2.7072 14 8 4.2353 7.7079 2.5780 15 8 6.0687 6.6791 3.8822 16 8 6.3628 8.6396 2.6688 17 6 5.8744 9.5374 1.7729 18 6 4.8509 10.3986 2.1402 19 6 4.2790 10.3393 3.5331 20 8 5.1971 10.9365 4.4509 21 14 2.6628 11.2647 3.5809 22 6 4.3556 11.3102 1.2277 23 6 4.8799 11.3647 -0.0511 24 35 4.1994 12.6129 -1.2981 25 6 5.9008 10.5066 -0.4196 26 6 6.4024 9.5974 0.4912 27 6 7.5186 8.6672 0.0913 28 6 6.0337 4.2706 -0.0166 29 6 5.4485 2.8574 -0.0107 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.3648 3.7453 1.2464 36 1 3.7923 3.1588 2.1333 37 1 3.7052 5.6369 2.1259 38 1 3.6998 5.6315 0.3463 39 1 7.2400 6.3777 1.2237 40 1 5.8129 6.9651 0.3363 41 1 4.1106 9.2993 3.8128 42 1 6.0621 10.5050 4.4790 43 1 2.8838 12.6912 3.2325 44 1 1.6992 10.6533 2.6307 45 1 3.5584 11.9806 1.5132 46 1 6.3090 10.5510 -1.4184 47 1 7.1026 7.7995 -0.4207 48 1 8.2045 9.1886 -0.5763 49 1 8.0560 8.3406 0.9816 50 1 7.1222 4.2129 -0.0197 51 1 5.6950 4.8002 -0.9070 52 1 5.7875 2.3280 0.8798 53 1 5.7814 2.3225 -0.9002 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8227984_16464698.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:17:52 Heat of formation + Delta-G solvation = -233.226485 kcal Electronic energy + Delta-G solvation = -43732.074035 eV Core-core repulsion = 38045.506559 eV Total energy + Delta-G solvation = -5686.567477 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 495.058 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -49.10936 -42.90524 -41.79824 -39.80384 -39.13511 -38.62872 -38.05991 -37.69950 -37.47091 -34.95941 -33.98698 -33.46783 -32.63484 -32.11136 -30.63257 -29.42934 -28.30649 -27.33289 -25.11249 -24.26758 -24.06487 -23.54242 -22.76447 -22.06810 -21.64794 -20.87944 -19.93887 -19.21520 -19.03765 -18.80664 -18.48204 -17.86188 -17.72016 -17.51885 -17.18616 -16.96555 -16.83164 -16.59915 -16.30324 -15.82639 -15.61034 -15.42635 -15.33867 -15.07463 -14.94826 -14.89324 -14.68705 -14.51933 -14.18660 -14.13617 -13.95539 -13.87871 -13.74344 -13.66708 -13.57083 -13.53339 -13.47927 -13.28791 -13.20839 -13.14543 -13.08190 -12.93902 -12.93005 -12.58269 -12.42442 -12.29463 -12.20428 -12.06257 -11.89832 -11.75941 -11.67450 -11.57705 -11.46604 -11.37447 -11.27418 -11.11484 -10.26454 -10.05525 -4.95810 -1.45336 -0.52842 -0.34501 0.22535 0.68670 1.05528 1.19068 1.55007 1.58772 1.74234 1.84115 2.19773 2.52490 2.76973 3.01383 3.05072 3.12577 3.20643 3.33062 3.45811 3.50609 3.55902 3.64702 3.66077 3.71900 3.76894 3.93711 3.94573 3.97963 4.01033 4.01803 4.07239 4.11556 4.20567 4.27216 4.29208 4.29371 4.45236 4.50769 4.56808 4.58986 4.62706 4.70869 4.76583 4.78349 4.85992 4.86745 4.87638 4.92059 4.97854 4.99525 5.07448 5.11703 5.23852 5.28344 5.41630 6.32411 6.61936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.077 4.077 7 H 0.149 0.851 8 C -0.111 4.111 9 C -0.172 4.172 10 C 0.124 3.876 11 F -0.212 7.212 12 C -0.671 4.671 13 S 2.575 3.425 14 O -0.956 6.956 15 O -0.953 6.953 16 O -0.659 6.659 17 C 0.067 3.933 18 C -0.084 4.084 19 C -0.125 4.125 20 O -0.538 6.538 21 Si 0.798 3.202 22 C -0.103 4.103 23 C -0.069 4.069 24 Br -0.022 7.022 25 C -0.067 4.067 26 C -0.061 4.061 27 C -0.157 4.157 28 C -0.122 4.122 29 C -0.111 4.111 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.137 0.863 39 H 0.187 0.813 40 H 0.200 0.800 41 H 0.088 0.912 42 H 0.373 0.627 43 H -0.264 1.264 44 H -0.250 1.250 45 H 0.141 0.859 46 H 0.187 0.813 47 H 0.124 0.876 48 H 0.114 0.886 49 H 0.082 0.918 50 H 0.103 0.897 51 H 0.130 0.870 52 H 0.055 0.945 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 1.236 -8.500 8.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.430 6.430 6 C -0.095 4.095 7 H 0.166 0.834 8 C -0.149 4.149 9 C -0.209 4.209 10 C 0.104 3.896 11 F -0.193 7.193 12 C -0.800 4.800 13 S 2.674 3.326 14 O -0.955 6.955 15 O -0.951 6.951 16 O -0.618 6.618 17 C 0.024 3.976 18 C -0.087 4.087 19 C -0.231 4.231 20 O -0.345 6.345 21 Si 0.696 3.304 22 C -0.123 4.123 23 C -0.150 4.150 24 Br 0.064 6.936 25 C -0.087 4.087 26 C -0.064 4.064 27 C -0.213 4.213 28 C -0.160 4.160 29 C -0.149 4.149 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.155 0.845 39 H 0.204 0.796 40 H 0.217 0.783 41 H 0.105 0.895 42 H 0.222 0.778 43 H -0.190 1.190 44 H -0.175 1.175 45 H 0.158 0.842 46 H 0.204 0.796 47 H 0.142 0.858 48 H 0.133 0.867 49 H 0.101 0.899 50 H 0.121 0.879 51 H 0.148 0.852 52 H 0.074 0.926 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.651 2.397 -8.492 8.977 hybrid contribution 1.835 -1.659 -0.031 2.474 sum 0.183 0.737 -8.523 8.557 Atomic orbital electron populations 1.21822 0.90640 1.04245 1.03798 1.23240 0.96949 0.79422 1.02380 1.86510 1.24231 1.33377 1.83450 1.24282 0.80596 0.93305 0.71076 1.90676 1.61151 1.44473 1.46657 1.21290 0.96610 0.88489 1.03130 0.83386 1.21465 1.02872 0.94250 0.96279 1.22704 0.92098 0.99065 1.07054 1.20881 0.94983 0.88073 0.85626 1.92963 1.91242 1.81877 1.53219 1.31836 1.16477 1.08287 1.23369 1.06057 0.74376 0.74305 0.77826 1.93632 1.35592 1.78854 1.87386 1.93661 1.81329 1.74318 1.45806 1.85695 1.70982 1.41374 1.63753 1.17977 0.97582 0.94075 0.87922 1.20499 0.95430 0.95023 0.97766 1.25991 1.04904 1.06893 0.85350 1.86726 1.27284 1.59261 1.61206 0.92026 0.73968 0.75881 0.88539 1.20957 1.00513 0.98431 0.92393 1.22138 1.00012 0.98649 0.94176 1.96879 1.85863 1.55604 1.55269 1.21380 0.93661 0.92086 1.01524 1.20392 0.97649 0.98684 0.89701 1.21677 0.95448 0.99534 1.04639 1.22167 1.03398 0.94322 0.96074 1.21475 0.91680 0.97758 1.03985 0.91352 0.90996 0.88660 0.91231 0.91821 0.88179 0.92340 0.90773 0.84528 0.79587 0.78323 0.89471 0.77817 1.19025 1.17517 0.84213 0.79580 0.85815 0.86731 0.89940 0.87852 0.85172 0.92609 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 10.29 71.98 0.74 1.27 16 2 C 0.05 0.06 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.07 10.13 -51.40 -0.52 -1.59 16 4 C 0.46 1.82 7.25 71.24 0.52 2.33 16 5 O -0.54 -5.80 15.73 21.97 0.35 -5.45 16 6 C -0.08 0.27 2.63 -11.54 -0.03 0.24 16 7 H 0.15 -1.52 8.14 -2.39 -0.02 -1.54 16 8 C -0.11 0.26 5.02 30.59 0.15 0.41 16 9 C -0.17 0.76 4.56 30.59 0.14 0.90 16 10 C 0.12 -0.55 0.88 -10.79 -0.01 -0.56 16 11 F -0.21 -1.00 14.81 44.97 0.67 -0.33 16 12 C -0.67 5.67 3.17 71.98 0.23 5.90 16 13 S 2.57 6.52 4.08 -56.49 -0.23 6.29 16 14 O -0.96 -4.60 11.95 -118.57 -1.42 -6.02 16 15 O -0.95 -11.35 17.31 -118.57 -2.05 -13.41 16 16 O -0.66 -0.87 8.09 -61.71 -0.50 -1.37 16 17 C 0.07 0.02 4.76 22.50 0.11 0.13 16 18 C -0.08 -0.36 4.61 -19.77 -0.09 -0.45 16 19 C -0.12 -0.76 2.14 71.24 0.15 -0.61 16 20 O -0.54 -3.61 12.65 -148.98 -1.89 -5.49 16 21 Si 0.80 2.44 30.40 68.60 2.09 4.53 16 22 C -0.10 -0.32 8.40 22.27 0.19 -0.13 16 23 C -0.07 0.07 6.22 22.32 0.14 0.21 16 24 Br -0.02 0.03 33.70 -20.37 -0.69 -0.66 16 25 C -0.07 0.44 9.46 22.27 0.21 0.65 16 26 C -0.06 0.39 5.41 -19.77 -0.11 0.28 16 27 C -0.16 2.19 7.88 71.24 0.56 2.75 16 28 C -0.12 1.18 5.00 30.58 0.15 1.33 16 29 C -0.11 0.38 4.37 30.58 0.13 0.51 16 30 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 33 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 34 H 0.06 0.15 8.13 -2.39 -0.02 0.13 16 35 H 0.10 -0.39 8.12 -2.39 -0.02 -0.41 16 36 H 0.06 0.13 7.80 -2.38 -0.02 0.11 16 37 H 0.07 -0.05 5.76 -2.39 -0.01 -0.06 16 38 H 0.14 -1.58 8.14 -2.39 -0.02 -1.60 16 39 H 0.19 -2.59 7.07 -2.39 -0.02 -2.61 16 40 H 0.20 -3.38 5.80 -2.39 -0.01 -3.39 16 41 H 0.09 0.60 5.11 -2.39 -0.01 0.59 16 42 H 0.37 1.13 8.60 -74.06 -0.64 0.49 16 43 H -0.26 -1.51 6.81 99.48 0.68 -0.83 16 44 H -0.25 -1.20 7.11 99.48 0.71 -0.50 16 45 H 0.14 0.50 4.94 -2.91 -0.01 0.48 16 46 H 0.19 -2.45 8.06 -2.91 -0.02 -2.47 16 47 H 0.12 -2.51 5.70 -2.39 -0.01 -2.53 16 48 H 0.11 -1.93 8.13 -2.39 -0.02 -1.95 16 49 H 0.08 -1.07 6.71 -2.39 -0.02 -1.09 16 50 H 0.10 -1.20 8.14 -2.39 -0.02 -1.22 16 51 H 0.13 -2.23 8.14 -2.39 -0.02 -2.25 16 52 H 0.06 0.14 7.76 -2.39 -0.02 0.13 16 53 H 0.09 -0.34 8.10 -2.38 -0.02 -0.36 16 Total: 0.00 -29.56 441.91 -0.21 -29.77 By element: Atomic # 1 Polarization: -22.32 SS G_CDS: 0.35 Total: -21.97 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 3.63 Total: 15.70 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -6.03 Total: -33.32 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.67 Total: -0.33 kcal Atomic # 14 Polarization: 2.44 SS G_CDS: 2.09 Total: 4.53 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -0.23 Total: 6.29 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -0.69 Total: -0.66 kcal Total: -29.56 -0.21 -29.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8227984_16464698.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.458 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds