Wall clock time and date at job start Mon Mar 8 2021 11:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34237 * 116.99530 * 2 1 4 4 O 1.20820 * 119.99963 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99825 * 179.97438 * 3 2 1 6 6 H 1.09000 * 112.84835 * 48.80080 * 5 3 2 7 7 C 1.53772 * 113.61581 * 180.02562 * 5 3 2 8 8 C 1.53779 * 87.08389 * 139.97996 * 7 5 3 9 9 H 1.09011 * 113.61252 * 89.20314 * 8 7 5 10 10 S 1.81400 * 113.61631 * 220.01841 * 8 7 5 11 11 O 1.42091 * 110.54245 * 67.03570 * 10 8 7 12 12 O 1.42104 * 110.54265 * 290.28230 * 10 8 7 13 13 O 1.52201 * 104.44943 * 178.65725 * 10 8 7 14 14 C 1.35924 * 113.99758 * 76.70140 * 13 10 8 15 15 C 1.38704 * 120.04626 * 80.24823 * 14 13 10 16 16 C 1.50693 * 120.01942 * 0.03780 * 15 14 13 17 17 C 1.38163 * 119.95595 * 180.27510 * 15 14 13 18 18 C 1.38349 * 120.04481 * 359.74257 * 17 15 14 19 19 Cl 1.73595 * 119.95553 * 179.97438 * 18 17 15 20 20 C 1.38381 * 120.08297 * 359.97438 * 18 17 15 21 21 C 1.38120 * 120.04453 * 0.02562 * 20 18 17 22 22 C 1.50707 * 120.01915 * 179.97438 * 21 20 18 23 23 O 1.42898 * 109.46836 * 104.54524 * 22 21 20 24 24 Si 1.86296 * 109.47352 * 344.53971 * 22 21 20 25 25 C 1.53772 * 87.17265 * 334.61213 * 8 7 5 26 26 H 1.08995 * 109.47175 * 60.00310 * 1 2 3 27 27 H 1.09010 * 109.46734 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47223 * 299.99223 * 1 2 3 29 29 H 1.09003 * 113.61599 * 25.43155 * 7 5 3 30 30 H 1.09003 * 113.62101 * 254.53215 * 7 5 3 31 31 H 1.08995 * 109.47632 * 264.40451 * 16 15 14 32 32 H 1.09005 * 109.47265 * 24.40731 * 16 15 14 33 33 H 1.09004 * 109.47346 * 144.40173 * 16 15 14 34 34 H 1.08000 * 119.97849 * 179.72364 * 17 15 14 35 35 H 1.08004 * 119.97794 * 180.02562 * 20 18 17 36 36 H 1.09000 * 109.46684 * 224.53854 * 22 21 20 37 37 H 0.96696 * 114.00599 * 65.52721 * 23 22 21 38 38 H 1.48501 * 110.00213 * 300.00225 * 24 22 21 39 39 H 1.48498 * 109.99863 * 61.31923 * 24 22 21 40 40 H 1.09006 * 113.61695 * 139.93721 * 25 8 7 41 41 H 1.08997 * 113.61354 * 270.84026 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2751 0.0006 6 1 4.0238 0.6364 -0.7549 7 6 4.1076 2.7143 0.0011 8 6 5.1805 2.2268 0.9890 9 1 6.0812 1.8497 0.5044 10 16 5.5379 3.4105 2.3163 11 8 4.4148 3.5503 3.1755 12 8 6.2117 4.5502 1.8000 13 8 6.5833 2.7137 3.1754 14 6 7.8331 2.7227 2.6412 15 6 8.6303 3.8518 2.7584 16 6 8.1115 5.0694 3.4788 17 6 9.8983 3.8610 2.2098 18 6 10.3751 2.7431 1.5486 19 17 11.9684 2.7575 0.8596 20 6 9.5835 1.6137 1.4358 21 6 8.3153 1.6006 1.9829 22 6 7.4535 0.3705 1.8592 23 8 7.4222 -0.3170 3.1115 24 14 8.1589 -0.7531 0.5513 25 6 4.1926 1.1218 1.3986 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 3.4169 3.4405 0.4299 30 1 4.5110 3.0296 -0.9612 31 1 7.6938 5.7694 2.7552 32 1 7.3366 4.7712 4.1850 33 1 8.9290 5.5486 4.0176 34 1 10.5176 4.7415 2.2969 35 1 9.9576 0.7419 0.9196 36 1 6.4413 0.6627 1.5798 37 1 6.9891 0.1772 3.8209 38 1 8.1967 -0.0497 -0.7560 39 1 9.5269 -1.1840 0.9359 40 1 4.6646 0.1530 1.5628 41 1 3.5253 1.4117 2.2101 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8270826_13206342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:07 Heat of formation + Delta-G solvation = -152.138189 kcal Electronic energy + Delta-G solvation = -32156.837901 eV Core-core repulsion = 27545.409339 eV Total energy + Delta-G solvation = -4611.428562 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.056 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.86862 -41.99761 -39.96929 -39.72968 -38.48309 -38.14784 -37.56643 -37.39082 -37.34353 -34.43329 -32.04540 -30.06187 -28.66904 -28.22784 -27.50134 -26.99427 -24.42752 -23.54427 -22.78770 -21.83203 -20.96034 -20.08433 -19.44651 -19.03455 -18.65384 -18.49522 -17.99889 -17.77141 -17.52515 -16.84754 -16.75260 -16.61395 -15.92688 -15.67256 -15.48194 -15.00882 -14.91550 -14.72302 -14.57105 -14.25061 -14.15667 -14.09602 -13.98641 -13.92438 -13.83173 -13.60437 -13.39325 -13.24569 -13.19191 -13.12970 -13.04432 -12.85946 -12.50940 -12.35640 -12.27684 -12.17869 -11.85779 -11.78504 -11.53617 -11.44739 -11.32063 -10.31243 -10.04271 -5.10406 -1.36296 -0.46570 -0.36106 0.66322 0.77186 0.99402 1.02992 1.38076 1.57111 1.70882 1.86510 2.24496 2.37070 2.60767 2.82268 2.92136 2.95717 3.13174 3.24125 3.48906 3.53465 3.56942 3.63650 3.72543 3.79472 3.89635 3.94333 4.11068 4.12703 4.14355 4.20763 4.21600 4.29647 4.39130 4.40651 4.56220 4.56910 4.59151 4.65703 4.67677 4.83952 4.94372 5.26349 5.28440 6.26864 6.61114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.468 3.532 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.141 0.859 7 C -0.084 4.084 8 C -0.666 4.666 9 H 0.163 0.837 10 S 2.591 3.409 11 O -0.911 6.911 12 O -0.937 6.937 13 O -0.655 6.655 14 C 0.067 3.933 15 C -0.026 4.026 16 C -0.132 4.132 17 C -0.096 4.096 18 C -0.004 4.004 19 Cl -0.043 7.043 20 C -0.110 4.110 21 C -0.091 4.091 22 C -0.107 4.107 23 O -0.522 6.522 24 Si 0.741 3.259 25 C -0.098 4.098 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.373 0.627 38 H -0.237 1.237 39 H -0.241 1.241 40 H 0.111 0.889 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -3.972 -2.547 4.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.310 3.690 4 O -0.385 6.385 5 C -0.115 4.115 6 H 0.159 0.841 7 C -0.122 4.122 8 C -0.771 4.771 9 H 0.180 0.820 10 S 2.686 3.314 11 O -0.909 6.909 12 O -0.935 6.935 13 O -0.614 6.614 14 C 0.026 3.974 15 C -0.028 4.028 16 C -0.189 4.189 17 C -0.115 4.115 18 C -0.032 4.032 19 Cl -0.014 7.014 20 C -0.129 4.129 21 C -0.094 4.094 22 C -0.214 4.214 23 O -0.327 6.327 24 Si 0.637 3.363 25 C -0.136 4.136 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.101 0.899 37 H 0.221 0.779 38 H -0.161 1.161 39 H -0.165 1.165 40 H 0.130 0.870 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.101 -3.748 -2.923 4.879 hybrid contribution -0.239 1.027 0.460 1.151 sum 0.862 -2.721 -2.463 3.770 Atomic orbital electron populations 1.23369 0.75607 1.04197 1.02894 1.86505 1.23962 1.32866 1.83696 1.23393 0.91404 0.81726 0.72527 1.90715 1.66806 1.36414 1.44563 1.22446 0.88134 1.00032 1.00849 0.84133 1.22612 0.93697 0.96086 0.99828 1.32466 1.08307 1.16860 1.19510 0.81988 1.05885 0.74521 0.75453 0.75526 1.93689 1.50626 1.84576 1.61986 1.93674 1.70994 1.47375 1.81483 1.85690 1.27368 1.85420 1.62876 1.17660 0.82347 0.95573 1.01866 1.20105 0.92570 0.94789 0.95359 1.21176 1.02250 0.94941 1.00522 1.20984 0.95022 0.98230 0.97225 1.21038 0.88411 0.95373 0.98391 1.98431 1.21642 1.98590 1.82696 1.20782 0.92612 0.98256 1.01214 1.20386 0.95978 0.95274 0.97757 1.25936 1.01929 0.97074 0.96498 1.86765 1.82551 1.44563 1.18824 0.92947 0.82632 0.86309 0.74390 1.22848 0.95500 0.98351 0.96854 0.91624 0.87652 0.91567 0.87162 0.87449 0.86938 0.91395 0.89696 0.82659 0.83489 0.89919 0.77877 1.16130 1.16485 0.87036 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 101.05 1.07 1.02 16 2 O -0.35 -0.04 10.57 -39.28 -0.41 -0.46 16 3 C 0.47 0.35 7.49 36.00 0.27 0.62 16 4 O -0.50 -1.97 15.65 -18.75 -0.29 -2.26 16 5 C -0.09 0.23 4.26 -90.87 -0.39 -0.15 16 6 H 0.14 -0.76 8.14 -51.93 -0.42 -1.18 16 7 C -0.08 0.16 7.00 -25.92 -0.18 -0.02 16 8 C -0.67 1.46 2.86 -25.92 -0.07 1.39 16 9 H 0.16 -0.71 5.87 -51.92 -0.31 -1.01 16 10 S 2.59 2.97 4.91 -107.50 -0.53 2.44 16 11 O -0.91 -3.81 17.31 -67.04 -1.16 -4.98 16 12 O -0.94 -2.40 13.27 -67.04 -0.89 -3.29 16 13 O -0.65 -0.43 8.22 -51.83 -0.43 -0.85 16 14 C 0.07 0.06 4.92 -39.22 -0.19 -0.13 16 15 C -0.03 -0.02 5.16 -104.48 -0.54 -0.56 16 16 C -0.13 -0.04 8.39 36.00 0.30 0.27 16 17 C -0.10 0.01 9.50 -39.57 -0.38 -0.37 16 18 C 0.00 0.00 6.32 -39.49 -0.25 -0.25 16 19 Cl -0.04 -0.01 28.95 -51.86 -1.50 -1.52 16 20 C -0.11 -0.05 8.44 -39.57 -0.33 -0.38 16 21 C -0.09 -0.01 4.80 -104.47 -0.50 -0.51 16 22 C -0.11 0.17 1.88 36.01 0.07 0.24 16 23 O -0.52 0.43 12.63 -35.23 -0.45 -0.02 16 24 Si 0.74 -1.80 30.42 -169.99 -5.17 -6.97 16 25 C -0.10 0.28 6.66 -25.83 -0.17 0.11 16 26 H 0.07 -0.08 8.13 -51.93 -0.42 -0.51 16 27 H 0.11 -0.40 8.14 -51.92 -0.42 -0.82 16 28 H 0.07 -0.07 8.13 -51.93 -0.42 -0.50 16 29 H 0.11 -0.06 7.39 -51.93 -0.38 -0.44 16 30 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 31 H 0.11 0.09 6.72 -51.93 -0.35 -0.26 16 32 H 0.07 0.04 7.26 -51.93 -0.38 -0.33 16 33 H 0.08 -0.16 8.12 -51.93 -0.42 -0.58 16 34 H 0.16 -0.35 8.06 -52.49 -0.42 -0.77 16 35 H 0.15 -0.05 4.94 -52.48 -0.26 -0.31 16 36 H 0.08 -0.30 2.07 -51.93 -0.11 -0.41 16 37 H 0.37 -0.97 8.81 45.56 0.40 -0.57 16 38 H -0.24 0.45 7.11 56.52 0.40 0.85 16 39 H -0.24 -0.02 6.79 56.52 0.38 0.36 16 40 H 0.11 -0.62 6.98 -51.93 -0.36 -0.98 16 41 H 0.11 -0.22 7.41 -51.93 -0.38 -0.61 16 LS Contribution 358.43 15.07 5.40 5.40 Total: 0.00 -9.09 358.43 -11.03 -20.12 By element: Atomic # 1 Polarization: -4.59 SS G_CDS: -4.30 Total: -8.89 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.30 Total: 1.27 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -3.63 Total: -11.85 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: -5.17 Total: -6.97 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -0.53 Total: 2.44 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.50 Total: -1.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -9.09 -11.03 -20.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8270826_13206342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.015 kcal (2) G-P(sol) polarization free energy of solvation -9.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds