Wall clock time and date at job start Mon Mar 8 2021 13:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38695 * 120.02346 * 2 1 4 4 O 1.35923 * 120.04408 * 0.02562 * 3 2 1 5 5 S 1.52200 * 114.00051 * 79.30131 * 4 3 2 6 6 O 1.42098 * 104.27599 * 322.58557 * 5 4 3 7 7 O 1.42107 * 104.27281 * 194.73093 * 5 4 3 8 8 C 1.81401 * 104.44870 * 78.66253 * 5 4 3 9 9 H 1.08990 * 112.84798 * 45.71535 * 8 5 4 10 10 C 1.53778 * 113.61173 * 176.91279 * 8 5 4 11 11 C 1.53784 * 87.08102 * 139.97660 * 10 8 5 12 12 H 1.09000 * 113.61968 * 219.93216 * 11 10 8 13 13 O 1.42901 * 113.61297 * 89.11374 * 11 10 8 14 14 C 1.42894 * 114.00506 * 149.99968 * 13 11 10 15 15 C 1.50696 * 109.47814 * 179.97438 * 14 13 11 16 16 C 1.38236 * 120.00258 * 269.73268 * 15 14 13 17 17 C 1.38238 * 119.99914 * 180.36515 * 16 15 14 18 18 C 1.38233 * 120.00121 * 359.83949 * 17 16 15 19 19 C 1.38244 * 119.99877 * 0.13166 * 18 17 16 20 20 C 1.38229 * 120.00073 * 359.95778 * 19 18 17 21 21 C 1.53777 * 113.60920 * 274.41036 * 8 5 4 22 22 C 1.38747 * 119.91770 * 179.72019 * 3 2 1 23 23 C 1.50693 * 120.02252 * 180.23333 * 22 3 2 24 24 O 1.42900 * 109.47086 * 284.86076 * 23 22 3 25 25 Si 1.86306 * 109.46972 * 164.86794 * 23 22 3 26 26 C 1.38125 * 119.95206 * 0.25494 * 22 3 2 27 27 C 1.38388 * 120.04597 * 359.97438 * 26 22 3 28 28 Cl 1.73598 * 119.95690 * 179.97438 * 27 26 22 29 29 C 1.38172 * 120.01920 * 180.25034 * 2 1 3 30 30 H 1.09003 * 109.47555 * 96.37864 * 1 2 3 31 31 H 1.09004 * 109.47607 * 216.37727 * 1 2 3 32 32 H 1.09001 * 109.47320 * 336.37795 * 1 2 3 33 33 H 1.09003 * 113.61573 * 25.43625 * 10 8 5 34 34 H 1.08997 * 113.61482 * 254.52904 * 10 8 5 35 35 H 1.09005 * 109.46503 * 59.99815 * 14 13 11 36 36 H 1.08998 * 109.47035 * 300.00426 * 14 13 11 37 37 H 1.07997 * 119.99947 * 0.24499 * 16 15 14 38 38 H 1.08000 * 119.99548 * 179.97438 * 17 16 15 39 39 H 1.08000 * 120.00153 * 180.11171 * 18 17 16 40 40 H 1.07997 * 119.99833 * 179.97438 * 19 18 17 41 41 H 1.07995 * 120.00127 * 179.97438 * 20 19 18 42 42 H 1.09004 * 113.61696 * 105.47478 * 21 8 5 43 43 H 1.08997 * 113.61792 * 334.56407 * 21 8 5 44 44 H 1.08994 * 109.47276 * 44.86675 * 23 22 3 45 45 H 0.96702 * 113.99797 * 65.05787 * 24 23 22 46 46 H 1.48507 * 109.99686 * 299.99647 * 25 23 22 47 47 H 1.48490 * 110.00250 * 61.31445 * 25 23 22 48 48 H 1.08002 * 119.97659 * 179.97438 * 26 22 3 49 49 H 1.07999 * 119.98219 * 0.02602 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.2009 0.0000 4 8 1.5227 2.3788 0.0005 5 16 0.9906 2.7862 1.3671 6 8 0.5828 1.5625 1.9633 7 8 0.0497 3.8130 1.0848 8 6 2.4341 3.4653 2.2307 9 1 3.0128 4.1516 1.6127 10 6 2.1114 4.0181 3.6290 11 6 3.4395 3.3981 4.0944 12 1 3.3844 2.9371 5.0806 13 8 4.5604 4.2731 3.9528 14 6 5.5907 4.0591 4.9196 15 6 6.7170 5.0304 4.6770 16 6 7.7595 4.6844 3.8378 17 6 8.7965 5.5726 3.6212 18 6 8.7892 6.8080 4.2413 19 6 7.7463 7.1543 5.0800 20 6 6.7104 6.2655 5.2980 21 6 3.2882 2.3984 2.9356 22 6 3.5884 1.1983 0.0059 23 6 4.3447 2.5017 0.0112 24 8 4.2905 3.0892 -1.2903 25 14 6.1210 2.1869 0.4767 26 6 4.2758 0.0003 0.0064 27 6 3.5816 -1.1969 0.0016 28 17 4.4479 -2.7013 0.0016 29 6 2.1982 -1.1964 -0.0052 30 1 -0.3634 -0.1142 -1.0213 31 1 -0.3634 -0.8274 0.6095 32 1 -0.3634 0.9415 0.4118 33 1 1.2331 3.5628 4.0865 34 1 2.0978 5.1070 3.6755 35 1 5.9655 3.0393 4.8313 36 1 5.1873 4.2125 5.9205 37 1 7.7649 3.7194 3.3528 38 1 9.6112 5.3020 2.9659 39 1 9.5984 7.5026 4.0707 40 1 7.7409 8.1193 5.5648 41 1 5.8959 6.5358 5.9536 42 1 4.2248 2.1798 2.4225 43 1 2.7316 1.5004 3.2037 44 1 3.8941 3.1803 0.7353 45 1 3.4017 3.3516 -1.5666 46 1 6.1911 1.5759 1.8285 47 1 6.7559 1.2882 -0.5204 48 1 5.3558 -0.0022 0.0105 49 1 1.6582 -2.1317 -0.0097 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8270826_15608174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:18 Heat of formation + Delta-G solvation = -77.004393 kcal Electronic energy + Delta-G solvation = -38841.190820 eV Core-core repulsion = 33855.948836 eV Total energy + Delta-G solvation = -4985.241984 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.088 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.84390 -41.01834 -40.08552 -39.76770 -38.51069 -38.12400 -37.53944 -37.34828 -37.13793 -34.36343 -32.77525 -31.97594 -31.85978 -28.65269 -28.16069 -27.38672 -27.01024 -26.41230 -24.33360 -23.54866 -22.72738 -22.35757 -22.05214 -21.17758 -20.09647 -19.16412 -18.98421 -18.62911 -18.06339 -17.76600 -17.46632 -17.43699 -16.90668 -16.74576 -16.41109 -15.92358 -15.85154 -15.64524 -15.43567 -15.40392 -15.21209 -14.78478 -14.64321 -14.46776 -14.35702 -14.13641 -14.06406 -14.01733 -13.93994 -13.85600 -13.69969 -13.66527 -13.50016 -13.30665 -13.21038 -13.11705 -12.70364 -12.60093 -12.37705 -12.26852 -12.17436 -12.12807 -11.91897 -11.85608 -11.49476 -11.37720 -11.26049 -10.76336 -10.25787 -9.98549 -9.87071 -9.82335 -5.02832 -1.27973 -0.39814 -0.30433 0.26914 0.45357 0.71453 0.84794 1.07941 1.40110 1.73021 1.91613 2.24304 2.27912 2.46413 2.83810 2.99434 3.02786 3.05176 3.18155 3.23515 3.39847 3.55725 3.57564 3.66701 3.71043 3.77924 3.80776 3.91548 3.97007 4.03821 4.07572 4.13190 4.18848 4.21240 4.25765 4.28768 4.36723 4.42450 4.50736 4.53362 4.56696 4.57540 4.64899 4.67234 4.68025 4.70125 4.89877 4.92359 4.99351 5.07268 5.28317 5.48895 5.57235 5.58490 5.96758 6.02716 6.34599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.028 4.028 3 C 0.073 3.927 4 O -0.657 6.657 5 S 2.585 3.415 6 O -0.939 6.939 7 O -0.918 6.918 8 C -0.645 4.645 9 H 0.167 0.833 10 C -0.104 4.104 11 C 0.082 3.918 12 H 0.091 0.909 13 O -0.354 6.354 14 C 0.100 3.900 15 C -0.095 4.095 16 C -0.099 4.099 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.098 4.098 21 C -0.144 4.144 22 C -0.084 4.084 23 C -0.105 4.105 24 O -0.524 6.524 25 Si 0.739 3.261 26 C -0.111 4.111 27 C -0.005 4.005 28 Cl -0.045 7.045 29 C -0.096 4.096 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.372 0.628 46 H -0.235 1.235 47 H -0.242 1.242 48 H 0.147 0.853 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 0.023 3.550 4.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.030 4.030 3 C 0.031 3.969 4 O -0.616 6.616 5 S 2.681 3.319 6 O -0.937 6.937 7 O -0.916 6.916 8 C -0.751 4.751 9 H 0.185 0.815 10 C -0.142 4.142 11 C 0.022 3.978 12 H 0.109 0.891 13 O -0.272 6.272 14 C 0.024 3.976 15 C -0.096 4.096 16 C -0.117 4.117 17 C -0.139 4.139 18 C -0.129 4.129 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.182 4.182 22 C -0.087 4.087 23 C -0.213 4.213 24 O -0.329 6.329 25 Si 0.636 3.364 26 C -0.130 4.130 27 C -0.033 4.033 28 Cl -0.015 7.015 29 C -0.115 4.115 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.134 0.866 44 H 0.104 0.896 45 H 0.220 0.780 46 H -0.160 1.160 47 H -0.167 1.167 48 H 0.164 0.836 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.813 -0.725 3.329 5.113 hybrid contribution -1.133 -0.278 -0.027 1.167 sum 2.680 -1.002 3.302 4.369 Atomic orbital electron populations 1.21083 0.88538 1.05170 1.03038 1.20070 0.97882 0.90535 0.94542 1.17659 0.88979 0.80829 1.09434 1.85696 1.74432 1.43495 1.57984 1.05965 0.76603 0.75419 0.73879 1.93697 1.80036 1.42276 1.77682 1.93679 1.57084 1.59497 1.81355 1.32353 1.20232 1.11732 1.10827 0.81527 1.22847 0.97948 1.04084 0.89355 1.22782 0.86716 0.90551 0.97718 0.89109 1.87975 1.27951 1.57178 1.54132 1.21477 0.86718 0.97408 0.92004 1.19512 0.95367 0.95403 0.99269 1.21086 0.93771 0.99842 0.97019 1.21207 0.98675 0.94080 0.99977 1.21278 0.98433 0.96693 0.96512 1.21199 0.94381 0.99688 0.98815 1.21071 0.98307 0.92945 0.99253 1.23559 1.00523 0.96303 0.97799 1.20349 0.91645 0.96915 0.99799 1.25919 1.14248 0.91223 0.89929 1.86759 1.34310 1.80863 1.31015 0.92756 0.76845 0.87065 0.79714 1.20766 1.00458 0.89746 1.02000 1.21014 0.92699 0.87947 1.01607 1.98427 1.76267 1.30404 1.96442 1.20948 0.91633 0.98640 1.00268 0.89778 0.89171 0.90937 0.87647 0.87641 0.92026 0.91829 0.85859 0.85548 0.85811 0.85791 0.85951 0.89051 0.86559 0.89645 0.77977 1.15952 1.16673 0.83630 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.07 8.96 36.00 0.32 0.25 16 2 C -0.03 -0.03 5.13 -104.48 -0.54 -0.57 16 3 C 0.07 0.11 4.77 -39.22 -0.19 -0.08 16 4 O -0.66 -0.99 8.51 -51.82 -0.44 -1.44 16 5 S 2.59 3.94 4.51 -107.50 -0.48 3.45 16 6 O -0.94 -2.12 12.37 -67.04 -0.83 -2.95 16 7 O -0.92 -4.54 18.09 -67.04 -1.21 -5.75 16 8 C -0.64 0.68 2.85 -25.92 -0.07 0.61 16 9 H 0.17 -0.37 6.35 -51.93 -0.33 -0.69 16 10 C -0.10 0.21 7.50 -25.92 -0.19 0.01 16 11 C 0.08 -0.16 4.38 -25.91 -0.11 -0.28 16 12 H 0.09 -0.34 7.87 -51.93 -0.41 -0.75 16 13 O -0.35 0.20 10.25 -35.23 -0.36 -0.16 16 14 C 0.10 -0.15 5.90 36.00 0.21 0.06 16 15 C -0.10 0.02 5.51 -104.62 -0.58 -0.56 16 16 C -0.10 0.05 9.70 -39.58 -0.38 -0.33 16 17 C -0.12 0.08 10.05 -39.58 -0.40 -0.31 16 18 C -0.11 0.05 10.05 -39.58 -0.40 -0.34 16 19 C -0.12 0.04 10.05 -39.58 -0.40 -0.36 16 20 C -0.10 0.02 9.70 -39.58 -0.38 -0.37 16 21 C -0.14 0.23 6.00 -25.92 -0.16 0.07 16 22 C -0.08 -0.08 4.12 -104.48 -0.43 -0.52 16 23 C -0.11 -0.01 1.68 36.00 0.06 0.05 16 24 O -0.52 -0.48 12.63 -35.23 -0.45 -0.92 16 25 Si 0.74 -0.53 28.59 -169.99 -4.86 -5.39 16 26 C -0.11 -0.11 8.44 -39.57 -0.33 -0.45 16 27 C -0.01 0.00 6.32 -39.49 -0.25 -0.25 16 28 Cl -0.04 -0.02 28.95 -51.86 -1.50 -1.53 16 29 C -0.10 -0.02 9.51 -39.57 -0.38 -0.39 16 30 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 31 H 0.09 -0.07 8.13 -51.93 -0.42 -0.49 16 32 H 0.07 0.14 4.78 -51.93 -0.25 -0.11 16 33 H 0.11 -0.37 8.10 -51.93 -0.42 -0.79 16 34 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 35 H 0.06 -0.15 8.08 -51.93 -0.42 -0.57 16 36 H 0.06 -0.17 8.09 -51.93 -0.42 -0.59 16 37 H 0.12 -0.27 8.06 -52.49 -0.42 -0.70 16 38 H 0.13 -0.32 8.06 -52.49 -0.42 -0.75 16 39 H 0.12 -0.26 8.06 -52.49 -0.42 -0.68 16 40 H 0.12 -0.23 8.06 -52.49 -0.42 -0.65 16 41 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 42 H 0.09 -0.15 4.00 -51.93 -0.21 -0.35 16 43 H 0.12 -0.25 7.38 -51.93 -0.38 -0.64 16 44 H 0.09 -0.11 2.79 -51.93 -0.14 -0.26 16 45 H 0.37 -0.38 8.74 45.56 0.40 0.02 16 46 H -0.24 0.22 6.79 56.52 0.38 0.60 16 47 H -0.24 -0.31 6.80 56.52 0.38 0.08 16 48 H 0.15 0.06 4.94 -52.49 -0.26 -0.20 16 49 H 0.15 -0.31 8.06 -52.49 -0.42 -0.73 16 LS Contribution 411.97 15.07 6.21 6.21 Total: 0.00 -7.82 411.97 -14.40 -22.22 By element: Atomic # 1 Polarization: -4.12 SS G_CDS: -5.88 Total: -10.01 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -4.59 Total: -3.75 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -3.29 Total: -11.21 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: -4.86 Total: -5.39 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -0.48 Total: 3.45 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.50 Total: -1.53 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -7.82 -14.40 -22.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8270826_15608174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.783 kcal (2) G-P(sol) polarization free energy of solvation -7.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds