Wall clock time and date at job start Mon Mar 8 2021 13:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38695 * 120.02346 * 2 1 4 4 O 1.35923 * 120.04408 * 0.02562 * 3 2 1 5 5 S 1.52200 * 114.00051 * 79.30131 * 4 3 2 6 6 O 1.42098 * 104.27599 * 322.58557 * 5 4 3 7 7 O 1.42107 * 104.27281 * 194.73093 * 5 4 3 8 8 C 1.81401 * 104.44870 * 78.66253 * 5 4 3 9 9 H 1.08990 * 112.84798 * 45.71535 * 8 5 4 10 10 C 1.53778 * 113.61173 * 176.91279 * 8 5 4 11 11 C 1.53784 * 87.08102 * 139.97660 * 10 8 5 12 12 H 1.09000 * 113.61968 * 219.93216 * 11 10 8 13 13 O 1.42901 * 113.61297 * 89.11374 * 11 10 8 14 14 C 1.42894 * 114.00506 * 149.99968 * 13 11 10 15 15 C 1.50696 * 109.47814 * 179.97438 * 14 13 11 16 16 C 1.38236 * 120.00258 * 269.73268 * 15 14 13 17 17 C 1.38238 * 119.99914 * 180.36515 * 16 15 14 18 18 C 1.38233 * 120.00121 * 359.83949 * 17 16 15 19 19 C 1.38244 * 119.99877 * 0.13166 * 18 17 16 20 20 C 1.38229 * 120.00073 * 359.95778 * 19 18 17 21 21 C 1.53777 * 113.60920 * 274.41036 * 8 5 4 22 22 C 1.38747 * 119.91770 * 179.72019 * 3 2 1 23 23 C 1.50693 * 120.02252 * 180.23333 * 22 3 2 24 24 O 1.42900 * 109.47086 * 284.86076 * 23 22 3 25 25 Si 1.86306 * 109.46972 * 164.86794 * 23 22 3 26 26 C 1.38125 * 119.95206 * 0.25494 * 22 3 2 27 27 C 1.38388 * 120.04597 * 359.97438 * 26 22 3 28 28 Cl 1.73598 * 119.95690 * 179.97438 * 27 26 22 29 29 C 1.38172 * 120.01920 * 180.25034 * 2 1 3 30 30 H 1.09003 * 109.47555 * 96.37864 * 1 2 3 31 31 H 1.09004 * 109.47607 * 216.37727 * 1 2 3 32 32 H 1.09001 * 109.47320 * 336.37795 * 1 2 3 33 33 H 1.09003 * 113.61573 * 25.43625 * 10 8 5 34 34 H 1.08997 * 113.61482 * 254.52904 * 10 8 5 35 35 H 1.09005 * 109.46503 * 59.99815 * 14 13 11 36 36 H 1.08998 * 109.47035 * 300.00426 * 14 13 11 37 37 H 1.07997 * 119.99947 * 0.24499 * 16 15 14 38 38 H 1.08000 * 119.99548 * 179.97438 * 17 16 15 39 39 H 1.08000 * 120.00153 * 180.11171 * 18 17 16 40 40 H 1.07997 * 119.99833 * 179.97438 * 19 18 17 41 41 H 1.07995 * 120.00127 * 179.97438 * 20 19 18 42 42 H 1.09004 * 113.61696 * 105.47478 * 21 8 5 43 43 H 1.08997 * 113.61792 * 334.56407 * 21 8 5 44 44 H 1.08994 * 109.47276 * 44.86675 * 23 22 3 45 45 H 0.96702 * 113.99797 * 65.05787 * 24 23 22 46 46 H 1.48507 * 109.99686 * 299.99647 * 25 23 22 47 47 H 1.48490 * 110.00250 * 61.31445 * 25 23 22 48 48 H 1.08002 * 119.97659 * 179.97438 * 26 22 3 49 49 H 1.07999 * 119.98219 * 0.02602 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.2009 0.0000 4 8 1.5227 2.3788 0.0005 5 16 0.9906 2.7862 1.3671 6 8 0.5828 1.5625 1.9633 7 8 0.0497 3.8130 1.0848 8 6 2.4341 3.4653 2.2307 9 1 3.0128 4.1516 1.6127 10 6 2.1114 4.0181 3.6290 11 6 3.4395 3.3981 4.0944 12 1 3.3844 2.9371 5.0806 13 8 4.5604 4.2731 3.9528 14 6 5.5907 4.0591 4.9196 15 6 6.7170 5.0304 4.6770 16 6 7.7595 4.6844 3.8378 17 6 8.7965 5.5726 3.6212 18 6 8.7892 6.8080 4.2413 19 6 7.7463 7.1543 5.0800 20 6 6.7104 6.2655 5.2980 21 6 3.2882 2.3984 2.9356 22 6 3.5884 1.1983 0.0059 23 6 4.3447 2.5017 0.0112 24 8 4.2905 3.0892 -1.2903 25 14 6.1210 2.1869 0.4767 26 6 4.2758 0.0003 0.0064 27 6 3.5816 -1.1969 0.0016 28 17 4.4479 -2.7013 0.0016 29 6 2.1982 -1.1964 -0.0052 30 1 -0.3634 -0.1142 -1.0213 31 1 -0.3634 -0.8274 0.6095 32 1 -0.3634 0.9415 0.4118 33 1 1.2331 3.5628 4.0865 34 1 2.0978 5.1070 3.6755 35 1 5.9655 3.0393 4.8313 36 1 5.1873 4.2125 5.9205 37 1 7.7649 3.7194 3.3528 38 1 9.6112 5.3020 2.9659 39 1 9.5984 7.5026 4.0707 40 1 7.7409 8.1193 5.5648 41 1 5.8959 6.5358 5.9536 42 1 4.2248 2.1798 2.4225 43 1 2.7316 1.5004 3.2037 44 1 3.8941 3.1803 0.7353 45 1 3.4017 3.3516 -1.5666 46 1 6.1911 1.5759 1.8285 47 1 6.7559 1.2882 -0.5204 48 1 5.3558 -0.0022 0.0105 49 1 1.6582 -2.1317 -0.0097 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8270826_15608174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:16 Heat of formation + Delta-G solvation = -72.906102 kcal Electronic energy + Delta-G solvation = -38841.013105 eV Core-core repulsion = 33855.948836 eV Total energy + Delta-G solvation = -4985.064269 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.088 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.89890 -40.88034 -39.97757 -39.79272 -38.65718 -38.15684 -37.61582 -37.45869 -37.02959 -34.39263 -32.64665 -32.00670 -31.73920 -28.68138 -28.09253 -27.26268 -26.89757 -26.31813 -24.38585 -23.43175 -22.75037 -22.23082 -22.06321 -21.08771 -20.13942 -19.17635 -19.03867 -18.68583 -17.99690 -17.71701 -17.41127 -17.37118 -16.91936 -16.60428 -16.33033 -15.96944 -15.78141 -15.64417 -15.44665 -15.30909 -15.16741 -14.82875 -14.64045 -14.39721 -14.22541 -14.15704 -14.12005 -14.01414 -13.89400 -13.86526 -13.70555 -13.60893 -13.43309 -13.33674 -13.17341 -13.14924 -12.74986 -12.56107 -12.40210 -12.29262 -12.07060 -12.01573 -11.77038 -11.72218 -11.50173 -11.31669 -11.25186 -10.59911 -10.27548 -10.03345 -9.77135 -9.72135 -4.96702 -1.34541 -0.44617 -0.34690 0.37294 0.55212 0.66245 0.78943 1.11090 1.45575 1.77025 1.88020 2.25392 2.38495 2.47199 2.94678 2.98827 3.04003 3.13856 3.16773 3.39855 3.43791 3.57668 3.58378 3.67031 3.75027 3.91175 3.93487 3.97477 4.06390 4.19272 4.20614 4.27647 4.33244 4.35124 4.38967 4.40577 4.45451 4.54187 4.55802 4.60240 4.66001 4.69549 4.71484 4.75512 4.81587 4.82742 4.88217 4.90994 5.13029 5.20653 5.25758 5.60103 5.68022 5.69355 6.13196 6.18031 6.39202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.038 4.038 3 C 0.062 3.938 4 O -0.661 6.661 5 S 2.586 3.414 6 O -0.950 6.950 7 O -0.961 6.961 8 C -0.634 4.634 9 H 0.177 0.823 10 C -0.109 4.109 11 C 0.084 3.916 12 H 0.113 0.887 13 O -0.367 6.367 14 C 0.098 3.902 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.131 4.131 18 C -0.125 4.125 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.147 4.147 22 C -0.086 4.086 23 C -0.117 4.117 24 O -0.536 6.536 25 Si 0.774 3.226 26 C -0.120 4.120 27 C -0.008 4.008 28 Cl -0.044 7.044 29 C -0.093 4.093 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.378 0.622 46 H -0.226 1.226 47 H -0.273 1.273 48 H 0.149 0.851 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -0.504 4.382 5.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.041 4.041 3 C 0.020 3.980 4 O -0.620 6.620 5 S 2.686 3.314 6 O -0.948 6.948 7 O -0.959 6.959 8 C -0.744 4.744 9 H 0.195 0.805 10 C -0.148 4.148 11 C 0.024 3.976 12 H 0.131 0.869 13 O -0.286 6.286 14 C 0.022 3.978 15 C -0.106 4.106 16 C -0.128 4.128 17 C -0.149 4.149 18 C -0.143 4.143 19 C -0.154 4.154 20 C -0.130 4.130 21 C -0.185 4.185 22 C -0.089 4.089 23 C -0.224 4.224 24 O -0.343 6.343 25 Si 0.672 3.328 26 C -0.138 4.138 27 C -0.036 4.036 28 Cl -0.014 7.014 29 C -0.111 4.111 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.111 0.889 43 H 0.141 0.859 44 H 0.116 0.884 45 H 0.227 0.773 46 H -0.150 1.150 47 H -0.200 1.200 48 H 0.166 0.834 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.314 -1.252 4.153 6.117 hybrid contribution -1.260 -0.133 -0.316 1.306 sum 3.054 -1.385 3.836 5.095 Atomic orbital electron populations 1.21166 0.88372 1.04908 1.03977 1.20250 0.98241 0.90818 0.94760 1.17826 0.89280 0.80879 1.09970 1.85656 1.74551 1.43683 1.58104 1.05816 0.77096 0.74748 0.73745 1.93670 1.80861 1.42518 1.77753 1.93621 1.59565 1.60517 1.82216 1.32302 1.18624 1.12350 1.11115 0.80537 1.23030 0.98805 1.04521 0.88412 1.22839 0.86103 0.90109 0.98524 0.86908 1.87954 1.28440 1.57636 1.54598 1.21563 0.86305 0.97590 0.92357 1.19750 0.95958 0.95678 0.99263 1.21360 0.93758 1.00585 0.97094 1.21488 0.99208 0.94051 1.00135 1.21531 0.98858 0.97234 0.96635 1.21434 0.94598 1.00280 0.99131 1.21286 0.98717 0.93275 0.99705 1.23674 1.00390 0.96503 0.97952 1.20420 0.91497 0.97274 0.99719 1.26164 1.15137 0.91173 0.89902 1.86728 1.35015 1.80951 1.31565 0.92407 0.75306 0.86140 0.78931 1.20884 1.00721 0.89960 1.02238 1.21086 0.92981 0.87904 1.01643 1.98427 1.76287 1.30273 1.96440 1.21158 0.91500 0.99129 0.99353 0.88606 0.87890 0.92401 0.86245 0.87360 0.90960 0.90718 0.84406 0.84026 0.84677 0.84860 0.85167 0.88910 0.85907 0.88436 0.77274 1.15028 1.19955 0.83379 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.19 8.96 71.23 0.64 0.45 16 2 C -0.04 -0.10 5.13 -19.77 -0.10 -0.20 16 3 C 0.06 0.22 4.77 22.50 0.11 0.32 16 4 O -0.66 -2.66 8.51 -61.78 -0.53 -3.19 16 5 S 2.59 10.04 4.51 -56.49 -0.25 9.78 16 6 O -0.95 -4.88 12.37 -118.57 -1.47 -6.35 16 7 O -0.96 -11.07 18.09 -118.57 -2.15 -13.22 16 8 C -0.63 1.48 2.85 31.12 0.09 1.57 16 9 H 0.18 -0.81 6.35 -2.39 -0.02 -0.82 16 10 C -0.11 0.52 7.50 31.12 0.23 0.75 16 11 C 0.08 -0.46 4.38 31.12 0.14 -0.32 16 12 H 0.11 -1.09 7.87 -2.39 -0.02 -1.11 16 13 O -0.37 0.87 10.25 -148.98 -1.53 -0.66 16 14 C 0.10 -0.41 5.90 71.23 0.42 0.01 16 15 C -0.11 0.10 5.51 -19.87 -0.11 -0.01 16 16 C -0.11 0.18 9.70 22.27 0.22 0.39 16 17 C -0.13 0.22 10.05 22.27 0.22 0.44 16 18 C -0.12 0.12 10.05 22.27 0.22 0.34 16 19 C -0.14 0.06 10.05 22.27 0.22 0.28 16 20 C -0.11 0.04 9.70 22.27 0.22 0.26 16 21 C -0.15 0.60 6.00 31.12 0.19 0.79 16 22 C -0.09 -0.19 4.12 -19.77 -0.08 -0.27 16 23 C -0.12 -0.04 1.68 71.23 0.12 0.08 16 24 O -0.54 -1.25 12.63 -148.98 -1.88 -3.13 16 25 Si 0.77 -1.27 28.59 68.60 1.96 0.69 16 26 C -0.12 -0.25 8.44 22.28 0.19 -0.06 16 27 C -0.01 -0.01 6.32 22.33 0.14 0.13 16 28 Cl -0.04 -0.03 28.95 -2.72 -0.08 -0.11 16 29 C -0.09 0.00 9.51 22.28 0.21 0.22 16 30 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.10 -0.17 8.13 -2.38 -0.02 -0.19 16 32 H 0.06 0.28 4.78 -2.39 -0.01 0.27 16 33 H 0.12 -0.92 8.10 -2.39 -0.02 -0.94 16 34 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.07 -0.47 8.08 -2.38 -0.02 -0.49 16 36 H 0.07 -0.50 8.09 -2.39 -0.02 -0.52 16 37 H 0.14 -0.75 8.06 -2.91 -0.02 -0.78 16 38 H 0.14 -0.81 8.06 -2.91 -0.02 -0.83 16 39 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 40 H 0.13 -0.46 8.06 -2.91 -0.02 -0.48 16 41 H 0.13 -0.39 8.06 -2.91 -0.02 -0.42 16 42 H 0.09 -0.40 4.00 -2.38 -0.01 -0.40 16 43 H 0.12 -0.65 7.38 -2.39 -0.02 -0.66 16 44 H 0.10 -0.27 2.79 -2.39 -0.01 -0.28 16 45 H 0.38 -0.43 8.74 -74.06 -0.65 -1.08 16 46 H -0.23 0.70 6.79 99.48 0.68 1.38 16 47 H -0.27 -0.92 6.80 99.48 0.68 -0.24 16 48 H 0.15 0.16 4.94 -2.91 -0.01 0.15 16 49 H 0.18 -0.86 8.06 -2.91 -0.02 -0.88 16 Total: 0.00 -18.40 411.97 -2.28 -20.68 By element: Atomic # 1 Polarization: -10.03 SS G_CDS: 0.35 Total: -9.67 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 3.28 Total: 5.18 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -7.55 Total: -26.54 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 1.96 Total: 0.69 kcal Atomic # 16 Polarization: 10.04 SS G_CDS: -0.25 Total: 9.78 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -18.40 -2.28 -20.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8270826_15608174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.226 kcal (2) G-P(sol) polarization free energy of solvation -18.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds