Wall clock time and date at job start Mon Mar 8 2021 13:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45201 * 109.46566 * 2 1 4 4 C 1.34229 * 116.99436 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00141 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99908 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46624 * 60.00807 * 6 4 3 8 8 C 1.53000 * 109.47144 * 180.02562 * 6 4 3 9 9 C 1.53001 * 109.46979 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47113 * 300.00408 * 9 8 6 11 11 F 1.39905 * 109.46670 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47161 * 299.99763 * 10 9 8 13 13 S 1.81400 * 109.47025 * 180.02562 * 12 10 9 14 14 O 1.42097 * 110.54376 * 286.06118 * 13 12 10 15 15 O 1.42101 * 110.54464 * 62.81026 * 13 12 10 16 16 O 1.52199 * 104.45125 * 174.43226 * 13 12 10 17 17 C 1.35930 * 113.99627 * 77.63162 * 16 13 12 18 18 C 1.38697 * 120.04346 * 260.33694 * 17 16 13 19 19 C 1.50697 * 120.02281 * 359.95374 * 18 17 16 20 20 O 1.42899 * 109.47398 * 284.57598 * 19 18 17 21 21 Si 1.86298 * 109.47084 * 164.57356 * 19 18 17 22 22 C 1.38171 * 119.95435 * 179.97438 * 18 17 16 23 23 C 1.38341 * 120.04347 * 0.02562 * 22 18 17 24 24 Cl 1.73596 * 119.95599 * 179.97438 * 23 22 18 25 25 C 1.38392 * 120.08368 * 359.97438 * 23 22 18 26 26 C 1.38125 * 120.04268 * 359.74576 * 25 23 22 27 27 C 1.50698 * 120.01847 * 180.27694 * 26 25 23 28 28 C 1.53002 * 109.47267 * 60.00208 * 10 9 8 29 29 C 1.52996 * 109.47146 * 300.00717 * 6 4 3 30 30 H 1.09006 * 109.47098 * 60.00418 * 1 2 3 31 31 H 1.09000 * 109.46944 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47730 * 299.99825 * 1 2 3 33 33 H 1.09001 * 109.47173 * 240.00015 * 2 1 3 34 34 H 1.08993 * 109.46633 * 119.99944 * 2 1 3 35 35 H 1.08998 * 109.46854 * 60.00760 * 8 6 4 36 36 H 1.08999 * 109.47261 * 300.00538 * 8 6 4 37 37 H 1.08998 * 109.46823 * 60.00599 * 9 8 6 38 38 H 1.08999 * 109.46906 * 180.02562 * 9 8 6 39 39 H 1.08999 * 109.47130 * 300.00502 * 12 10 9 40 40 H 1.09000 * 109.47255 * 60.00246 * 12 10 9 41 41 H 1.09003 * 109.46964 * 44.57667 * 19 18 17 42 42 H 0.96696 * 113.99664 * 65.06620 * 20 19 18 43 43 H 1.48499 * 110.00493 * 300.00613 * 21 19 18 44 44 H 1.48510 * 109.99808 * 61.32458 * 21 19 18 45 45 H 1.07997 * 119.97727 * 180.02562 * 22 18 17 46 46 H 1.07998 * 119.97207 * 180.02562 * 25 23 22 47 47 H 1.09002 * 109.47017 * 276.57747 * 27 26 25 48 48 H 1.08998 * 109.47327 * 36.57545 * 27 26 25 49 49 H 1.09003 * 109.46751 * 156.57591 * 27 26 25 50 50 H 1.08998 * 109.47212 * 59.99475 * 28 10 9 51 51 H 1.08999 * 109.46997 * 179.97438 * 28 10 9 52 52 H 1.09001 * 109.47137 * 60.00200 * 29 6 4 53 53 H 1.08998 * 109.47432 * 299.99595 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0806 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5843 3.4701 0.8896 8 6 5.4485 2.8575 0.0001 9 6 6.0333 4.2713 0.0002 10 6 5.5617 5.0183 -1.2490 11 9 6.0960 6.3113 -1.2485 12 6 6.0334 4.2715 -2.4982 13 16 5.4749 5.1576 -3.9793 14 8 4.0795 4.9730 -4.1743 15 8 6.0574 6.4525 -4.0350 16 8 6.1182 4.4066 -5.1363 17 6 5.4956 3.2405 -5.4528 18 6 6.0081 2.0343 -4.9987 19 6 7.2564 2.0154 -4.1547 20 8 8.3959 2.2506 -4.9843 21 14 7.4223 0.3539 -3.3284 22 6 5.3735 0.8500 -5.3210 23 6 4.2280 0.8668 -6.0965 24 17 3.4329 -0.6225 -6.5006 25 6 3.7152 2.0694 -6.5505 26 6 4.3435 3.2558 -6.2256 27 6 3.7811 4.5654 -6.7150 28 6 4.0338 5.0984 -1.2490 29 6 3.4495 3.6838 -1.2498 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.7845 2.3251 -0.8897 36 1 5.7844 2.3256 0.8903 37 1 5.6973 4.8034 0.8902 38 1 7.1218 4.2143 -0.0002 39 1 7.1219 4.2144 -2.4981 40 1 5.6168 3.2642 -2.4984 41 1 7.1932 2.7943 -3.3949 42 1 8.4152 3.1301 -5.3859 43 1 6.2433 0.0971 -2.4628 44 1 7.5415 -0.7137 -4.3539 45 1 5.7719 -0.0894 -4.9673 46 1 2.8206 2.0805 -7.1555 47 1 4.1283 4.7528 -7.7312 48 1 2.6922 4.5193 -6.7059 49 1 4.1162 5.3714 -6.0621 50 1 3.6978 5.6304 -0.3590 51 1 3.6979 5.6310 -2.1387 52 1 2.3610 3.7408 -1.2502 53 1 3.7858 3.1512 -2.1394 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8270826_16464696.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:42:08 Heat of formation + Delta-G solvation = -233.506104 kcal Electronic energy + Delta-G solvation = -45982.281770 eV Core-core repulsion = 40275.720379 eV Total energy + Delta-G solvation = -5706.561391 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 451.109 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -49.09241 -42.97381 -41.88617 -39.96178 -39.65679 -38.71767 -38.20514 -37.72162 -37.67067 -37.49068 -34.50496 -33.61600 -32.53464 -32.13523 -32.05948 -29.56377 -28.70699 -27.28628 -25.41435 -24.48633 -24.21561 -23.65443 -22.81567 -22.20140 -21.82755 -20.60775 -20.02426 -19.30895 -18.92797 -18.79265 -18.64267 -18.08224 -17.76892 -17.70129 -17.44472 -17.33551 -16.80389 -16.54345 -16.22592 -16.05517 -15.64113 -15.52249 -15.45644 -15.08915 -15.00240 -14.95581 -14.78317 -14.51043 -14.39564 -14.21469 -14.14815 -14.04272 -13.96404 -13.83582 -13.72595 -13.69213 -13.51962 -13.36570 -13.31586 -13.15838 -12.93281 -12.92197 -12.79529 -12.69574 -12.54699 -12.50510 -12.46347 -12.33509 -12.22858 -12.00499 -11.68559 -11.57170 -11.53470 -11.43627 -11.32623 -11.16312 -10.35342 -10.12742 -5.02090 -1.51024 -0.54648 -0.42037 0.57493 0.70710 1.04832 1.05600 1.51738 1.58267 1.75857 1.80560 2.12788 2.45380 2.71849 2.90517 2.99461 3.04414 3.08664 3.29284 3.34479 3.45271 3.50814 3.57608 3.61862 3.63281 3.75162 3.77939 3.85581 3.93848 3.94974 4.00639 4.00870 4.09187 4.17398 4.20275 4.24480 4.28551 4.35696 4.48781 4.50380 4.56257 4.62012 4.63660 4.73271 4.79126 4.83445 4.84883 4.86582 4.87688 4.90535 4.99996 5.07627 5.11143 5.19570 5.20678 5.41687 6.37557 6.61843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.532 6.532 6 C -0.084 4.084 7 H 0.143 0.857 8 C -0.111 4.111 9 C -0.123 4.123 10 C 0.135 3.865 11 F -0.203 7.203 12 C -0.698 4.698 13 S 2.584 3.416 14 O -0.942 6.942 15 O -0.944 6.944 16 O -0.656 6.656 17 C 0.056 3.944 18 C -0.095 4.095 19 C -0.112 4.112 20 O -0.531 6.531 21 Si 0.785 3.215 22 C -0.121 4.121 23 C -0.009 4.009 24 Cl -0.043 7.043 25 C -0.091 4.091 26 C -0.034 4.034 27 C -0.129 4.129 28 C -0.169 4.169 29 C -0.108 4.108 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.187 0.813 40 H 0.170 0.830 41 H 0.100 0.900 42 H 0.381 0.619 43 H -0.245 1.245 44 H -0.274 1.274 45 H 0.147 0.853 46 H 0.178 0.822 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.059 0.941 50 H 0.124 0.876 51 H 0.079 0.921 52 H 0.102 0.898 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -1.917 3.808 4.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.306 3.694 5 O -0.422 6.422 6 C -0.103 4.103 7 H 0.161 0.839 8 C -0.149 4.149 9 C -0.161 4.161 10 C 0.115 3.885 11 F -0.184 7.184 12 C -0.825 4.825 13 S 2.682 3.318 14 O -0.940 6.940 15 O -0.942 6.942 16 O -0.615 6.615 17 C 0.014 3.986 18 C -0.098 4.098 19 C -0.220 4.220 20 O -0.338 6.338 21 Si 0.683 3.317 22 C -0.140 4.140 23 C -0.037 4.037 24 Cl -0.013 7.013 25 C -0.110 4.110 26 C -0.036 4.036 27 C -0.185 4.185 28 C -0.206 4.206 29 C -0.146 4.146 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.205 0.795 40 H 0.187 0.813 41 H 0.117 0.883 42 H 0.230 0.770 43 H -0.170 1.170 44 H -0.200 1.200 45 H 0.164 0.836 46 H 0.195 0.805 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.078 0.922 50 H 0.142 0.858 51 H 0.097 0.903 52 H 0.120 0.880 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.490 -3.108 3.524 5.317 hybrid contribution -0.399 0.532 -0.841 1.072 sum -2.890 -2.576 2.682 4.710 Atomic orbital electron populations 1.21825 0.90828 1.04184 1.03768 1.23227 0.96845 0.79434 1.02395 1.86517 1.24329 1.33311 1.83444 1.24187 0.80653 0.93161 0.71356 1.90683 1.60959 1.44184 1.46353 1.21354 0.96948 0.88729 1.03223 0.83900 1.21588 0.91315 0.96774 1.05182 1.22102 1.03694 0.94772 0.95519 1.20684 0.94401 0.78328 0.95084 1.92992 1.87965 1.39952 1.97470 1.31941 1.16917 1.16209 1.17452 1.05863 0.74789 0.75234 0.75941 1.93691 1.32399 1.85571 1.82344 1.93668 1.78753 1.36569 1.85209 1.85702 1.68963 1.41470 1.65381 1.17857 0.94973 0.80772 1.04979 1.20513 0.98409 0.90981 0.99874 1.25996 0.83532 1.16932 0.95511 1.86746 1.40677 1.39968 1.66409 0.92363 0.86923 0.70695 0.81694 1.20917 0.95399 0.98099 0.99563 1.21139 0.94740 0.89055 0.98729 1.98429 1.78875 1.31843 1.92198 1.21206 1.01559 0.88147 1.00076 1.20287 0.92013 0.97911 0.93405 1.21192 1.03888 0.91491 1.01970 1.22603 0.91721 0.99302 1.07011 1.21527 1.03374 0.93638 0.96020 0.91375 0.88732 0.91073 0.91761 0.91180 0.90809 0.88499 0.87360 0.87424 0.79510 0.81258 0.88282 0.76978 1.16985 1.19992 0.83558 0.80484 0.88355 0.87684 0.92191 0.85790 0.90265 0.87960 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.64 10.29 71.98 0.74 1.38 16 2 C 0.05 -0.01 6.19 71.98 0.45 0.44 16 3 O -0.36 -0.53 10.12 -51.41 -0.52 -1.05 16 4 C 0.46 0.72 7.26 71.24 0.52 1.24 16 5 O -0.53 -3.85 15.73 21.98 0.35 -3.50 16 6 C -0.08 0.43 2.63 -11.54 -0.03 0.40 16 7 H 0.14 -1.40 8.14 -2.39 -0.02 -1.42 16 8 C -0.11 0.72 4.22 30.59 0.13 0.85 16 9 C -0.12 1.01 5.19 30.59 0.16 1.17 16 10 C 0.13 -0.44 1.10 -10.79 -0.01 -0.45 16 11 F -0.20 -0.55 15.87 44.97 0.71 0.16 16 12 C -0.70 2.38 2.63 71.98 0.19 2.57 16 13 S 2.58 9.75 3.77 -56.49 -0.21 9.54 16 14 O -0.94 -4.26 11.40 -118.57 -1.35 -5.61 16 15 O -0.94 -10.93 17.34 -118.57 -2.06 -12.99 16 16 O -0.66 -1.99 8.53 -61.86 -0.53 -2.51 16 17 C 0.06 0.16 4.93 22.50 0.11 0.27 16 18 C -0.09 -0.18 4.93 -19.77 -0.10 -0.28 16 19 C -0.11 0.13 2.05 71.24 0.15 0.27 16 20 O -0.53 -0.16 12.63 -148.98 -1.88 -2.05 16 21 Si 0.78 -1.01 30.42 68.60 2.09 1.08 16 22 C -0.12 -0.34 8.44 22.28 0.19 -0.15 16 23 C -0.01 -0.02 6.32 22.33 0.14 0.13 16 24 Cl -0.04 -0.06 28.95 -2.72 -0.08 -0.14 16 25 C -0.09 0.02 9.50 22.28 0.21 0.23 16 26 C -0.03 -0.06 5.15 -19.77 -0.10 -0.17 16 27 C -0.13 -0.06 8.98 71.24 0.64 0.58 16 28 C -0.17 0.66 4.74 30.61 0.15 0.81 16 29 C -0.11 0.47 4.86 30.61 0.15 0.62 16 30 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 34 H 0.07 0.00 8.13 -2.39 -0.02 -0.02 16 35 H 0.07 -0.43 6.39 -2.39 -0.02 -0.45 16 36 H 0.10 -0.66 8.10 -2.39 -0.02 -0.68 16 37 H 0.11 -1.16 8.14 -2.39 -0.02 -1.18 16 38 H 0.11 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H 0.19 -1.73 6.84 -2.39 -0.02 -1.75 16 40 H 0.17 -1.06 3.73 -2.39 -0.01 -1.07 16 41 H 0.10 -0.62 3.17 -2.39 -0.01 -0.63 16 42 H 0.38 -1.33 8.77 -74.06 -0.65 -1.98 16 43 H -0.25 -0.37 7.11 99.48 0.71 0.33 16 44 H -0.27 -1.14 6.80 99.48 0.68 -0.46 16 45 H 0.15 0.36 4.94 -2.91 -0.01 0.35 16 46 H 0.18 -0.95 8.06 -2.91 -0.02 -0.97 16 47 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.10 -0.29 8.13 -2.39 -0.02 -0.31 16 49 H 0.06 0.22 4.81 -2.39 -0.01 0.21 16 50 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 51 H 0.08 -0.09 5.73 -2.39 -0.01 -0.10 16 52 H 0.10 -0.50 8.11 -2.39 -0.02 -0.52 16 53 H 0.06 -0.21 6.43 -2.39 -0.02 -0.22 16 Total: 0.00 -22.30 432.68 0.54 -21.75 By element: Atomic # 1 Polarization: -14.92 SS G_CDS: 0.35 Total: -14.57 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 3.67 Total: 9.89 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -5.99 Total: -27.71 kcal Atomic # 9 Polarization: -0.55 SS G_CDS: 0.71 Total: 0.16 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.09 Total: 1.08 kcal Atomic # 16 Polarization: 9.75 SS G_CDS: -0.21 Total: 9.54 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -0.08 Total: -0.14 kcal Total: -22.30 0.54 -21.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8270826_16464696.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.752 kcal (2) G-P(sol) polarization free energy of solvation -22.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds