Wall clock time and date at job start Mon Mar 8 2021 13:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.47070 * 2 1 4 4 C 1.34231 * 116.99740 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00151 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99510 * 179.72598 * 4 3 2 7 7 H 1.09001 * 109.46994 * 300.27113 * 6 4 3 8 8 C 1.52994 * 109.47280 * 60.27539 * 6 4 3 9 9 C 1.53005 * 109.46900 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.46891 * 299.99548 * 9 8 6 11 11 F 1.39902 * 109.47607 * 300.00059 * 10 9 8 12 12 C 1.53005 * 109.46891 * 179.97438 * 10 9 8 13 13 S 1.81407 * 109.46994 * 60.00437 * 12 10 9 14 14 O 1.42105 * 110.53944 * 285.36701 * 13 12 10 15 15 O 1.42095 * 110.54400 * 62.11568 * 13 12 10 16 16 O 1.52199 * 104.44660 * 173.74140 * 13 12 10 17 17 C 1.35923 * 114.00200 * 76.54407 * 16 13 12 18 18 C 1.38700 * 120.04627 * 86.75142 * 17 16 13 19 19 C 1.50694 * 120.02177 * 359.95670 * 18 17 16 20 20 O 1.42908 * 109.47089 * 74.99783 * 19 18 17 21 21 Si 1.86299 * 109.47520 * 194.99898 * 19 18 17 22 22 C 1.38168 * 119.95649 * 179.97438 * 18 17 16 23 23 C 1.38343 * 120.04208 * 359.97438 * 22 18 17 24 24 Cl 1.73600 * 119.95725 * 179.97438 * 23 22 18 25 25 C 1.38390 * 120.08629 * 0.02562 * 23 22 18 26 26 C 1.38119 * 120.04251 * 359.74110 * 25 23 22 27 27 C 1.50706 * 120.02194 * 180.28065 * 26 25 23 28 28 C 1.53000 * 109.47163 * 60.00229 * 10 9 8 29 29 C 1.52989 * 109.47205 * 299.99883 * 28 10 9 30 30 H 1.08996 * 109.47745 * 300.00016 * 1 2 3 31 31 H 1.09004 * 109.47390 * 60.00378 * 1 2 3 32 32 H 1.09005 * 109.46867 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47275 * 239.99794 * 2 1 3 34 34 H 1.09001 * 109.47019 * 119.99994 * 2 1 3 35 35 H 1.08998 * 109.47184 * 299.99593 * 8 6 4 36 36 H 1.09001 * 109.47455 * 59.99857 * 8 6 4 37 37 H 1.09007 * 109.46759 * 179.97438 * 9 8 6 38 38 H 1.08994 * 109.47192 * 60.00043 * 9 8 6 39 39 H 1.09005 * 109.47181 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47198 * 300.00134 * 12 10 9 41 41 H 1.09000 * 109.47229 * 315.00160 * 19 18 17 42 42 H 0.96702 * 113.99712 * 299.99732 * 20 19 18 43 43 H 1.48504 * 109.99795 * 298.68163 * 21 19 18 44 44 H 1.48501 * 109.99686 * 59.99943 * 21 19 18 45 45 H 1.07994 * 119.97460 * 179.97438 * 22 18 17 46 46 H 1.08002 * 119.97574 * 180.02562 * 25 23 22 47 47 H 1.08996 * 109.46768 * 276.35265 * 27 26 25 48 48 H 1.08995 * 109.46861 * 36.35887 * 27 26 25 49 49 H 1.09001 * 109.47064 * 156.35628 * 27 26 25 50 50 H 1.09001 * 109.47255 * 179.97438 * 28 10 9 51 51 H 1.09007 * 109.46727 * 59.99686 * 28 10 9 52 52 H 1.08999 * 109.47447 * 300.00100 * 29 28 10 53 53 H 1.08999 * 109.47227 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9206 2.9374 -0.0057 7 1 3.5817 3.4668 -0.8962 8 6 3.4533 3.6882 1.2428 9 6 4.0376 5.1023 1.2361 10 6 5.5655 5.0227 1.2309 11 9 6.0011 4.3436 2.3739 12 6 6.1498 6.4368 1.2236 13 16 5.5957 7.3276 2.7035 14 8 4.2332 7.7100 2.5744 15 8 6.0677 6.6837 3.8790 16 8 6.3602 8.6430 2.6633 17 6 5.8710 9.5397 1.7665 18 6 4.8474 10.4008 2.1333 19 6 4.2758 10.3424 3.5264 20 8 5.1940 10.9408 4.4435 21 14 2.6593 11.2672 3.5738 22 6 4.3518 11.3118 1.2204 23 6 4.8764 11.3659 -0.0586 24 17 4.2517 12.5110 -1.2041 25 6 5.8977 10.5076 -0.4264 26 6 6.3990 9.5987 0.4848 27 6 7.5156 8.6686 0.0857 28 6 6.0328 4.2718 -0.0176 29 6 5.4486 2.8579 -0.0109 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.3648 3.7453 1.2463 36 1 3.7923 3.1588 2.1333 37 1 3.7043 5.6373 2.1254 38 1 3.6982 5.6314 0.3457 39 1 7.2383 6.3801 1.2194 40 1 5.8104 6.9655 0.3328 41 1 4.1079 9.3026 3.8070 42 1 6.0590 10.5095 4.4717 43 1 2.8798 12.6936 3.2241 44 1 1.6957 10.6546 2.6243 45 1 3.5545 11.9821 1.5055 46 1 6.3062 10.5516 -1.4252 47 1 7.0999 7.8003 -0.4254 48 1 8.2013 9.1897 -0.5823 49 1 8.0532 8.3430 0.9763 50 1 7.1214 4.2155 -0.0215 51 1 5.6935 4.8011 -0.9081 52 1 5.7879 2.3287 0.8796 53 1 5.7819 2.3229 -0.9001 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8270826_16464698.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:42:12 Heat of formation + Delta-G solvation = -244.485716 kcal Electronic energy + Delta-G solvation = -43815.790147 eV Core-core repulsion = 38108.752644 eV Total energy + Delta-G solvation = -5707.037503 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 451.109 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -49.10451 -42.87951 -41.79715 -39.84612 -39.13404 -38.62426 -38.13745 -37.69868 -37.67239 -37.39186 -34.84924 -33.95237 -32.63709 -32.10747 -31.96514 -29.44458 -28.30125 -27.32386 -25.11126 -24.40862 -24.17782 -23.55227 -22.75437 -22.10090 -21.70175 -20.87847 -19.92309 -19.20385 -19.03788 -18.80677 -18.54685 -17.86061 -17.71927 -17.56055 -17.38763 -17.14900 -16.87870 -16.59569 -16.30525 -15.88453 -15.61730 -15.51465 -15.33854 -15.10881 -14.96031 -14.89237 -14.72390 -14.52403 -14.25876 -14.16410 -14.01945 -13.94596 -13.87295 -13.73953 -13.58477 -13.56058 -13.50544 -13.29439 -13.20570 -13.16065 -13.12050 -13.07115 -12.93468 -12.59877 -12.48519 -12.39298 -12.32120 -12.23414 -12.20046 -11.99134 -11.76052 -11.57737 -11.51911 -11.37315 -11.28222 -11.11811 -10.26246 -10.06421 -4.94735 -1.42536 -0.47050 -0.33964 0.65185 0.79124 1.05547 1.19977 1.56028 1.58832 1.75109 1.87926 2.21138 2.53953 2.77883 3.03045 3.05662 3.14933 3.21402 3.33425 3.46139 3.50874 3.56928 3.65276 3.67103 3.72985 3.77181 3.94243 3.96266 3.98921 4.01779 4.02168 4.08181 4.11904 4.21083 4.27846 4.29232 4.30395 4.47379 4.51074 4.58155 4.59408 4.64794 4.74581 4.76863 4.78419 4.86831 4.87564 4.87847 4.92261 4.98902 4.99708 5.07591 5.11723 5.24032 5.29351 5.41622 6.32851 6.61959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.077 4.077 7 H 0.149 0.851 8 C -0.111 4.111 9 C -0.172 4.172 10 C 0.124 3.876 11 F -0.212 7.212 12 C -0.671 4.671 13 S 2.574 3.426 14 O -0.957 6.957 15 O -0.954 6.954 16 O -0.658 6.658 17 C 0.055 3.945 18 C -0.077 4.077 19 C -0.125 4.125 20 O -0.539 6.539 21 Si 0.801 3.199 22 C -0.123 4.123 23 C -0.011 4.011 24 Cl -0.044 7.044 25 C -0.086 4.086 26 C -0.054 4.054 27 C -0.157 4.157 28 C -0.122 4.122 29 C -0.111 4.111 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.137 0.863 39 H 0.186 0.814 40 H 0.200 0.800 41 H 0.088 0.912 42 H 0.373 0.627 43 H -0.265 1.265 44 H -0.251 1.251 45 H 0.142 0.858 46 H 0.188 0.812 47 H 0.124 0.876 48 H 0.114 0.886 49 H 0.082 0.918 50 H 0.103 0.897 51 H 0.130 0.870 52 H 0.055 0.945 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 1.269 -8.518 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.430 6.430 6 C -0.095 4.095 7 H 0.166 0.834 8 C -0.149 4.149 9 C -0.209 4.209 10 C 0.104 3.896 11 F -0.193 7.193 12 C -0.800 4.800 13 S 2.674 3.326 14 O -0.955 6.955 15 O -0.952 6.952 16 O -0.617 6.617 17 C 0.013 3.987 18 C -0.080 4.080 19 C -0.232 4.232 20 O -0.345 6.345 21 Si 0.698 3.302 22 C -0.142 4.142 23 C -0.038 4.038 24 Cl -0.015 7.015 25 C -0.104 4.104 26 C -0.057 4.057 27 C -0.213 4.213 28 C -0.160 4.160 29 C -0.149 4.149 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.155 0.845 39 H 0.204 0.796 40 H 0.217 0.783 41 H 0.105 0.895 42 H 0.222 0.778 43 H -0.191 1.191 44 H -0.176 1.176 45 H 0.159 0.841 46 H 0.206 0.794 47 H 0.142 0.858 48 H 0.133 0.867 49 H 0.100 0.900 50 H 0.121 0.879 51 H 0.148 0.852 52 H 0.074 0.926 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.443 2.055 -8.138 8.517 hybrid contribution 1.627 -1.283 -0.415 2.113 sum 0.184 0.773 -8.553 8.590 Atomic orbital electron populations 1.21823 0.90639 1.04243 1.03800 1.23241 0.96951 0.79423 1.02380 1.86512 1.24227 1.33373 1.83453 1.24285 0.80596 0.93305 0.71072 1.90676 1.61152 1.44476 1.46659 1.21291 0.96611 0.88487 1.03133 0.83385 1.21465 1.02874 0.94255 0.96273 1.22704 0.92103 0.99046 1.07056 1.20878 0.94979 0.88112 0.85610 1.92962 1.91217 1.81902 1.53231 1.31836 1.16459 1.08266 1.23411 1.06062 0.74382 0.74334 0.77797 1.93629 1.35614 1.78884 1.87383 1.93658 1.81329 1.74434 1.45794 1.85694 1.70943 1.41374 1.63717 1.17943 0.98108 0.94612 0.88028 1.20440 0.95186 0.94716 0.97656 1.26002 1.04939 1.06898 0.85361 1.86727 1.27278 1.59215 1.61264 0.92015 0.73889 0.75788 0.88482 1.20896 1.01459 0.99319 0.92505 1.21176 0.97350 0.94524 0.90773 1.98433 1.86184 1.58322 1.58568 1.21296 0.94438 0.92802 1.01885 1.20333 0.97411 0.98389 0.89578 1.21678 0.95441 0.99537 1.04637 1.22173 1.03400 0.94307 0.96087 1.21478 0.91683 0.97758 1.03979 0.91353 0.90995 0.88662 0.91228 0.91821 0.88184 0.92346 0.90775 0.84517 0.79615 0.78320 0.89464 0.77812 1.19126 1.17599 0.84119 0.79431 0.85806 0.86716 0.89956 0.87863 0.85169 0.92618 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.53 10.29 71.98 0.74 1.27 16 2 C 0.05 0.06 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.07 10.13 -51.43 -0.52 -1.59 16 4 C 0.46 1.83 7.25 71.24 0.52 2.35 16 5 O -0.54 -5.81 15.73 21.97 0.35 -5.47 16 6 C -0.08 0.27 2.63 -11.54 -0.03 0.24 16 7 H 0.15 -1.52 8.14 -2.39 -0.02 -1.54 16 8 C -0.11 0.26 5.02 30.59 0.15 0.41 16 9 C -0.17 0.76 4.56 30.59 0.14 0.90 16 10 C 0.12 -0.54 0.88 -10.79 -0.01 -0.55 16 11 F -0.21 -1.01 14.82 44.97 0.67 -0.35 16 12 C -0.67 5.66 3.17 71.98 0.23 5.89 16 13 S 2.57 6.62 4.08 -56.49 -0.23 6.39 16 14 O -0.96 -4.63 11.95 -118.57 -1.42 -6.05 16 15 O -0.95 -11.44 17.31 -118.57 -2.05 -13.50 16 16 O -0.66 -0.88 8.09 -61.78 -0.50 -1.38 16 17 C 0.05 0.02 4.76 22.50 0.11 0.12 16 18 C -0.08 -0.32 4.61 -19.77 -0.09 -0.41 16 19 C -0.13 -0.76 2.14 71.23 0.15 -0.61 16 20 O -0.54 -3.60 12.65 -148.98 -1.89 -5.49 16 21 Si 0.80 2.38 30.40 68.60 2.09 4.46 16 22 C -0.12 -0.36 8.44 22.28 0.19 -0.17 16 23 C -0.01 0.01 6.32 22.33 0.14 0.15 16 24 Cl -0.04 0.05 28.95 -2.72 -0.08 -0.03 16 25 C -0.09 0.59 9.50 22.28 0.21 0.80 16 26 C -0.05 0.36 5.41 -19.77 -0.11 0.25 16 27 C -0.16 2.20 7.88 71.24 0.56 2.76 16 28 C -0.12 1.18 5.00 30.59 0.15 1.33 16 29 C -0.11 0.38 4.37 30.59 0.13 0.51 16 30 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.09 -0.59 8.14 -2.38 -0.02 -0.61 16 33 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 34 H 0.06 0.15 8.13 -2.39 -0.02 0.13 16 35 H 0.10 -0.39 8.12 -2.39 -0.02 -0.41 16 36 H 0.06 0.13 7.80 -2.39 -0.02 0.11 16 37 H 0.07 -0.05 5.76 -2.38 -0.01 -0.06 16 38 H 0.14 -1.58 8.14 -2.39 -0.02 -1.60 16 39 H 0.19 -2.58 7.07 -2.39 -0.02 -2.60 16 40 H 0.20 -3.38 5.81 -2.39 -0.01 -3.40 16 41 H 0.09 0.60 5.11 -2.39 -0.01 0.59 16 42 H 0.37 1.14 8.60 -74.06 -0.64 0.50 16 43 H -0.27 -1.50 6.81 99.48 0.68 -0.82 16 44 H -0.25 -1.19 7.11 99.48 0.71 -0.48 16 45 H 0.14 0.47 4.94 -2.91 -0.01 0.45 16 46 H 0.19 -2.55 8.06 -2.91 -0.02 -2.57 16 47 H 0.12 -2.52 5.70 -2.39 -0.01 -2.53 16 48 H 0.11 -1.95 8.12 -2.39 -0.02 -1.97 16 49 H 0.08 -1.07 6.70 -2.39 -0.02 -1.09 16 50 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 51 H 0.13 -2.23 8.14 -2.38 -0.02 -2.25 16 52 H 0.05 0.15 7.76 -2.39 -0.02 0.13 16 53 H 0.09 -0.34 8.10 -2.39 -0.02 -0.36 16 Total: 0.00 -29.73 437.37 0.40 -29.33 By element: Atomic # 1 Polarization: -22.42 SS G_CDS: 0.35 Total: -22.07 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 3.63 Total: 15.74 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -6.03 Total: -33.47 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.67 Total: -0.35 kcal Atomic # 14 Polarization: 2.38 SS G_CDS: 2.09 Total: 4.46 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -0.23 Total: 6.39 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -29.73 0.40 -29.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8270826_16464698.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.156 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds