Wall clock time and date at job start Mon Mar 8 2021 13:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47130 * 2 1 4 4 C 1.34228 * 116.99705 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00558 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00031 * 180.02562 * 4 3 2 7 7 H 1.08996 * 112.84954 * 48.80410 * 6 4 3 8 8 C 1.53785 * 113.61764 * 179.97438 * 6 4 3 9 9 C 1.53786 * 87.08171 * 140.06254 * 8 6 4 10 10 F 1.39901 * 113.60952 * 89.20181 * 9 8 6 11 11 C 1.52996 * 113.61299 * 220.01857 * 9 8 6 12 12 S 1.81403 * 109.47008 * 178.47138 * 11 9 8 13 13 O 1.42099 * 110.53988 * 63.06541 * 12 11 9 14 14 O 1.42098 * 110.54221 * 286.31403 * 12 11 9 15 15 O 1.52200 * 104.44863 * 174.68967 * 12 11 9 16 16 C 1.35922 * 114.00090 * 78.99079 * 15 12 11 17 17 C 1.38703 * 120.03764 * 89.31426 * 16 15 12 18 18 C 1.50694 * 120.02414 * 359.97438 * 17 16 15 19 19 O 1.42902 * 109.47312 * 252.71030 * 18 17 16 20 20 Si 1.86302 * 109.47060 * 132.71170 * 18 17 16 21 21 C 1.38163 * 119.95332 * 179.74668 * 17 16 15 22 22 C 1.38351 * 120.04111 * 0.55324 * 21 17 16 23 23 Cl 1.73602 * 119.95558 * 179.72551 * 22 21 17 24 24 C 1.38385 * 120.08340 * 359.69483 * 22 21 17 25 25 C 1.38115 * 120.04566 * 0.02950 * 24 22 21 26 26 C 1.50695 * 120.02356 * 180.02562 * 25 24 22 27 27 C 1.53780 * 87.17165 * 334.61007 * 9 8 6 28 28 H 1.09000 * 109.47259 * 59.99945 * 1 2 3 29 29 H 1.09001 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47071 * 300.00343 * 1 2 3 31 31 H 1.09006 * 109.47048 * 239.99541 * 2 1 3 32 32 H 1.09004 * 109.46816 * 120.00281 * 2 1 3 33 33 H 1.08998 * 113.61232 * 25.51763 * 8 6 4 34 34 H 1.08993 * 113.61502 * 254.61586 * 8 6 4 35 35 H 1.08999 * 109.47163 * 58.47137 * 11 9 8 36 36 H 1.09000 * 109.47346 * 298.47081 * 11 9 8 37 37 H 1.08998 * 109.47241 * 12.70892 * 18 17 16 38 38 H 0.96704 * 113.99434 * 300.00035 * 19 18 17 39 39 H 1.48496 * 110.00111 * 58.68131 * 20 18 17 40 40 H 1.48498 * 109.99908 * 180.02562 * 20 18 17 41 41 H 1.08000 * 119.98372 * 180.27023 * 21 17 16 42 42 H 1.08002 * 119.97671 * 179.97438 * 24 22 21 43 43 H 1.09004 * 109.47500 * 276.05080 * 26 25 24 44 44 H 1.08997 * 109.47415 * 36.05392 * 26 25 24 45 45 H 1.09008 * 109.47519 * 156.05006 * 26 25 24 46 46 H 1.09002 * 113.61179 * 139.93839 * 27 9 8 47 47 H 1.09001 * 113.61706 * 270.83995 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.4716 3.5808 0.7564 8 6 5.4583 2.9679 -0.0001 9 6 5.3565 4.1442 -0.9855 10 9 5.2852 5.3939 -0.3608 11 6 6.3986 4.0979 -2.1048 12 16 6.1489 5.5053 -3.2218 13 8 6.3531 6.7311 -2.5327 14 8 4.9982 5.3021 -4.0303 15 8 7.3130 5.4256 -4.1991 16 6 7.1488 4.4994 -5.1803 17 6 6.5268 4.8505 -6.3693 18 6 6.0319 6.2590 -6.5741 19 8 4.6047 6.2774 -6.5046 20 14 6.5801 6.8729 -8.2455 21 6 6.3654 3.9090 -7.3676 22 6 6.8136 2.6140 -7.1773 23 17 6.6033 1.4310 -8.4303 24 6 7.4298 2.2607 -5.9896 25 6 7.5980 3.2004 -4.9916 26 6 8.2696 2.8152 -3.6987 27 6 3.9855 3.5818 -1.3966 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.9128 2.0757 -0.4307 34 1 5.8896 3.2411 0.9629 35 1 6.2914 3.1677 -2.6627 36 1 7.3981 4.1496 -1.6730 37 1 6.4418 6.9047 -5.7975 38 1 4.1715 5.7233 -7.1683 39 1 6.0540 5.9826 -9.3112 40 1 6.0988 8.2613 -8.4595 41 1 5.8851 4.1829 -8.2953 42 1 7.7786 1.2491 -5.8428 43 1 7.5372 2.3644 -3.0290 44 1 9.0654 2.0987 -3.9020 45 1 8.6921 3.7040 -3.2298 46 1 3.2295 4.3500 -1.5594 47 1 4.0365 2.8577 -2.2098 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8270826_16464788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:40 Heat of formation + Delta-G solvation = -198.564170 kcal Electronic energy + Delta-G solvation = -39015.704274 eV Core-core repulsion = 33621.733316 eV Total energy + Delta-G solvation = -5393.970958 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 423.078 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.22174 -42.72521 -41.87072 -39.75217 -39.37868 -38.48142 -38.16084 -37.58236 -37.50830 -37.26991 -34.50743 -32.82238 -32.17104 -31.73807 -28.48401 -27.39930 -27.28230 -26.80205 -24.37562 -23.95900 -22.51454 -22.44838 -21.64689 -20.88117 -19.82606 -19.33234 -18.94654 -18.82930 -18.37930 -17.83458 -17.65388 -17.54123 -17.16609 -17.09700 -16.53843 -16.30152 -16.21906 -16.00910 -15.75744 -15.42204 -15.21381 -14.92930 -14.71027 -14.65619 -14.62669 -14.43245 -14.21640 -14.04468 -13.87342 -13.83118 -13.69661 -13.48131 -13.35669 -13.33017 -13.18736 -13.08022 -13.00403 -12.97201 -12.80474 -12.64431 -12.53745 -12.40736 -12.16326 -12.04611 -11.95806 -11.87355 -11.58928 -11.50931 -11.41126 -10.79673 -10.02160 -9.90959 -5.01424 -1.34168 -0.32573 -0.20837 0.80118 0.92741 0.96662 1.09653 1.48359 1.53937 1.83369 2.05442 2.34073 2.59975 2.68203 2.77569 2.85110 3.10089 3.14600 3.21235 3.28926 3.37141 3.51983 3.69618 3.76085 3.84580 3.86879 3.95825 4.01352 4.03215 4.05560 4.11938 4.26147 4.30327 4.32531 4.40416 4.44362 4.57536 4.58995 4.61778 4.73244 4.79621 4.82706 4.86847 4.87311 4.95783 4.99646 5.05741 5.10685 5.38282 5.38595 6.46885 6.57702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.478 3.522 5 O -0.526 6.526 6 C -0.111 4.111 7 H 0.147 0.853 8 C -0.111 4.111 9 C 0.092 3.908 10 F -0.189 7.189 11 C -0.667 4.667 12 S 2.574 3.426 13 O -0.960 6.960 14 O -0.937 6.937 15 O -0.659 6.659 16 C 0.060 3.940 17 C -0.073 4.073 18 C -0.105 4.105 19 O -0.521 6.521 20 Si 0.769 3.231 21 C -0.111 4.111 22 C -0.011 4.011 23 Cl -0.047 7.047 24 C -0.089 4.089 25 C -0.065 4.065 26 C -0.162 4.162 27 C -0.151 4.151 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.193 0.807 36 H 0.189 0.811 37 H 0.096 0.904 38 H 0.385 0.615 39 H -0.245 1.245 40 H -0.290 1.290 41 H 0.159 0.841 42 H 0.180 0.820 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -7.622 -1.067 8.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.322 3.678 5 O -0.415 6.415 6 C -0.130 4.130 7 H 0.164 0.836 8 C -0.149 4.149 9 C 0.072 3.928 10 F -0.169 7.169 11 C -0.794 4.794 12 S 2.672 3.328 13 O -0.958 6.958 14 O -0.935 6.935 15 O -0.618 6.618 16 C 0.018 3.982 17 C -0.076 4.076 18 C -0.212 4.212 19 O -0.329 6.329 20 Si 0.668 3.332 21 C -0.129 4.129 22 C -0.038 4.038 23 Cl -0.018 7.018 24 C -0.107 4.107 25 C -0.068 4.068 26 C -0.217 4.217 27 C -0.188 4.188 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.210 0.790 36 H 0.206 0.794 37 H 0.114 0.886 38 H 0.235 0.765 39 H -0.169 1.169 40 H -0.217 1.217 41 H 0.176 0.824 42 H 0.197 0.803 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.104 0.896 46 H 0.123 0.877 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.684 -6.566 -1.691 7.292 hybrid contribution -1.097 -0.517 0.610 1.358 sum 1.587 -7.083 -1.080 7.339 Atomic orbital electron populations 1.21841 0.91045 1.04275 1.03631 1.23289 0.96729 0.79083 1.02833 1.86534 1.24234 1.33800 1.83282 1.23560 0.80671 0.92247 0.71367 1.90667 1.60904 1.43605 1.46361 1.22609 0.97980 0.90993 1.01369 0.83579 1.23615 0.93049 0.97204 1.01046 1.21424 0.95923 0.81868 0.93559 1.92994 1.97112 1.42963 1.83823 1.31846 1.11074 1.23376 1.13127 1.06096 0.73917 0.77120 0.75685 1.93630 1.84534 1.42365 1.75269 1.93735 1.49834 1.86567 1.63412 1.85727 1.66171 1.62157 1.47718 1.17917 1.05915 0.86750 0.87591 1.20307 0.97075 0.97383 0.92831 1.25385 0.85081 0.95023 1.15692 1.86777 1.15637 1.71165 1.59323 0.93850 0.90615 0.77494 0.71250 1.20967 1.01007 0.91117 0.99854 1.21118 1.00305 0.90646 0.91769 1.98435 1.95681 1.56335 1.51374 1.21212 0.98090 1.01475 0.89973 1.20242 0.97455 0.89684 0.99401 1.21755 1.02669 1.04936 0.92350 1.23930 0.95929 1.01984 0.96961 0.91398 0.88447 0.91438 0.90885 0.91075 0.84768 0.86969 0.78977 0.79367 0.88566 0.76537 1.16914 1.21711 0.82363 0.80302 0.86864 0.86613 0.89629 0.87732 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.62 10.29 71.98 0.74 1.36 16 2 C 0.05 -0.03 6.19 71.98 0.45 0.41 16 3 O -0.36 -0.82 10.22 -51.40 -0.53 -1.34 16 4 C 0.48 0.82 7.49 71.24 0.53 1.35 16 5 O -0.53 -3.02 15.65 21.96 0.34 -2.68 16 6 C -0.11 0.30 4.24 -10.95 -0.05 0.25 16 7 H 0.15 -0.69 8.14 -2.39 -0.02 -0.71 16 8 C -0.11 0.59 6.86 31.12 0.21 0.80 16 9 C 0.09 -0.18 1.60 -10.27 -0.02 -0.20 16 10 F -0.19 -0.94 16.13 44.97 0.73 -0.22 16 11 C -0.67 3.49 3.58 71.98 0.26 3.75 16 12 S 2.57 13.95 4.86 -56.49 -0.27 13.68 16 13 O -0.96 -14.01 17.28 -118.57 -2.05 -16.06 16 14 O -0.94 -8.19 14.13 -115.97 -1.64 -9.83 16 15 O -0.66 -2.10 7.94 -61.77 -0.49 -2.59 16 16 C 0.06 0.03 4.73 22.50 0.11 0.14 16 17 C -0.07 -0.10 4.12 -19.77 -0.08 -0.18 16 18 C -0.10 -0.43 1.97 71.23 0.14 -0.29 16 19 O -0.52 -3.60 11.53 -132.27 -1.53 -5.13 16 20 Si 0.77 -0.44 31.45 68.60 2.16 1.72 16 21 C -0.11 0.23 8.37 22.28 0.19 0.42 16 22 C -0.01 0.04 6.32 22.33 0.14 0.18 16 23 Cl -0.05 0.14 28.95 -2.72 -0.08 0.06 16 24 C -0.09 0.61 9.50 22.28 0.21 0.82 16 25 C -0.07 0.37 5.52 -19.78 -0.11 0.26 16 26 C -0.16 1.91 7.85 71.23 0.56 2.47 16 27 C -0.15 0.39 7.09 31.18 0.22 0.61 16 28 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.07 -0.08 8.13 -2.38 -0.02 -0.10 16 32 H 0.07 -0.05 8.13 -2.39 -0.02 -0.06 16 33 H 0.13 -1.04 7.40 -2.39 -0.02 -1.06 16 34 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.19 -2.28 4.97 -2.39 -0.01 -2.29 16 36 H 0.19 -2.15 7.17 -2.39 -0.02 -2.17 16 37 H 0.10 0.65 6.83 -2.39 -0.02 0.63 16 38 H 0.39 -0.36 8.60 -74.05 -0.64 -1.00 16 39 H -0.24 0.29 6.53 99.48 0.65 0.94 16 40 H -0.29 -1.97 7.11 99.48 0.71 -1.26 16 41 H 0.16 -0.74 6.40 -2.91 -0.02 -0.76 16 42 H 0.18 -2.20 8.06 -2.91 -0.02 -2.22 16 43 H 0.11 -1.83 5.41 -2.38 -0.01 -1.84 16 44 H 0.12 -1.77 8.12 -2.39 -0.02 -1.79 16 45 H 0.08 -1.01 6.40 -2.38 -0.02 -1.02 16 46 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.13 -0.73 7.94 -2.39 -0.02 -0.75 16 Total: 0.00 -28.45 409.92 0.54 -27.91 By element: Atomic # 1 Polarization: -18.09 SS G_CDS: 0.39 Total: -17.69 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 3.50 Total: 12.16 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -5.89 Total: -37.63 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.73 Total: -0.22 kcal Atomic # 14 Polarization: -0.44 SS G_CDS: 2.16 Total: 1.72 kcal Atomic # 16 Polarization: 13.95 SS G_CDS: -0.27 Total: 13.68 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.06 kcal Total: -28.45 0.54 -27.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8270826_16464788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.651 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds