Wall clock time and date at job start Mon Mar 8 2021 14:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00052 * 2 1 4 4 C 1.53006 * 112.84796 * 293.33206 * 3 2 1 5 5 F 1.39904 * 109.46782 * 196.72050 * 4 3 2 6 6 F 1.39897 * 109.46818 * 316.71933 * 4 3 2 7 7 F 1.39895 * 109.47139 * 76.71797 * 4 3 2 8 8 C 1.53775 * 113.69459 * 162.06147 * 3 2 1 9 9 C 1.53776 * 87.08229 * 270.87466 * 8 3 2 10 10 H 1.09004 * 113.61240 * 220.01981 * 9 8 3 11 11 C 1.53000 * 113.69698 * 89.12352 * 9 8 3 12 12 S 1.81401 * 109.46823 * 88.51145 * 11 9 8 13 13 O 1.42106 * 110.54389 * 284.81625 * 12 11 9 14 14 O 1.42098 * 110.54389 * 61.57472 * 12 11 9 15 15 O 1.52202 * 104.44778 * 173.19900 * 12 11 9 16 16 C 1.35918 * 114.00385 * 76.27106 * 15 12 11 17 17 C 1.38696 * 120.04566 * 266.28468 * 16 15 12 18 18 C 1.50695 * 120.02309 * 359.97438 * 17 16 15 19 19 C 1.38173 * 119.95635 * 179.97438 * 17 16 15 20 20 C 1.38341 * 120.04127 * 359.97438 * 19 17 16 21 21 Cl 1.73603 * 119.95346 * 179.97438 * 20 19 17 22 22 C 1.38386 * 120.08760 * 359.97438 * 20 19 17 23 23 C 1.38122 * 120.04104 * 359.74725 * 22 20 19 24 24 C 1.50697 * 120.02021 * 180.27595 * 23 22 20 25 25 O 1.42900 * 109.47385 * 255.86918 * 24 23 22 26 26 Si 1.86309 * 109.47233 * 15.86818 * 24 23 22 27 27 C 1.53781 * 113.61699 * 64.52257 * 3 2 1 28 28 H 1.09002 * 109.47381 * 176.10658 * 1 2 3 29 29 H 1.09001 * 109.47366 * 296.10058 * 1 2 3 30 30 H 1.08998 * 109.47116 * 56.10181 * 1 2 3 31 31 H 1.08993 * 113.61937 * 156.31972 * 8 3 2 32 32 H 1.09005 * 113.61206 * 25.41874 * 8 3 2 33 33 H 1.08997 * 109.47271 * 208.51279 * 11 9 8 34 34 H 1.09003 * 109.47018 * 328.51480 * 11 9 8 35 35 H 1.08997 * 109.47035 * 96.72231 * 18 17 16 36 36 H 1.08998 * 109.47636 * 216.72598 * 18 17 16 37 37 H 1.09004 * 109.46765 * 336.72275 * 18 17 16 38 38 H 1.08001 * 119.97586 * 180.02562 * 19 17 16 39 39 H 1.07998 * 119.97594 * 179.97438 * 22 20 19 40 40 H 1.09004 * 109.47483 * 135.86508 * 24 23 22 41 41 H 0.96696 * 113.99951 * 65.17325 * 25 24 23 42 42 H 1.48497 * 109.99854 * 58.68129 * 26 24 23 43 43 H 1.48501 * 109.99696 * 179.97438 * 26 24 23 44 44 H 1.09000 * 113.61681 * 334.65890 * 27 3 2 45 45 H 1.08994 * 113.69742 * 203.76163 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7417 2.0753 -1.2947 5 9 2.6292 3.1527 -1.3892 6 9 1.9236 1.2239 -2.3897 7 9 0.4269 2.5532 -1.2889 8 6 3.4854 1.3251 0.4337 9 6 2.9777 1.4932 1.8755 10 1 3.5676 2.1933 2.4672 11 6 2.7280 0.1678 2.5979 12 16 4.2550 -0.3727 3.4144 13 8 5.1750 -0.8871 2.4613 14 8 4.6636 0.5785 4.3879 15 8 3.8397 -1.5892 4.2295 16 6 3.6613 -2.7155 3.4900 17 6 2.3992 -3.0435 3.0176 18 6 1.2240 -2.1514 3.3244 19 6 2.2200 -4.1887 2.2656 20 6 3.2987 -5.0076 1.9832 21 17 3.0709 -6.4463 1.0387 22 6 4.5589 -4.6815 2.4527 23 6 4.7431 -3.5346 3.2000 24 6 6.1167 -3.1767 3.7058 25 8 6.2017 -3.4698 5.1018 26 14 7.3960 -4.1690 2.7839 27 6 1.7071 2.1148 1.2720 28 1 -0.3634 -1.0253 -0.0698 29 1 -0.3634 0.4521 0.9229 30 1 -0.3633 0.5731 -0.8530 31 1 4.0384 2.1877 0.0621 32 1 4.0040 0.3820 0.2606 33 1 1.9451 0.3027 3.3441 34 1 2.4156 -0.5864 1.8757 35 1 1.0494 -1.4790 2.4845 36 1 0.3372 -2.7630 3.4907 37 1 1.4355 -1.5671 4.2199 38 1 1.2374 -4.4442 1.8972 39 1 5.3996 -5.3224 2.2316 40 1 6.2972 -2.1136 3.5461 41 1 6.1302 -4.4112 5.3110 42 1 7.2970 -3.8971 1.3274 43 1 8.7552 -3.8247 3.2731 44 1 0.7900 1.8093 1.7757 45 1 1.7733 3.1935 1.1310 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8270826_17541816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:17:50 Heat of formation + Delta-G solvation = -261.426557 kcal Electronic energy + Delta-G solvation = -41682.980623 eV Core-core repulsion = 35794.284129 eV Total energy + Delta-G solvation = -5888.696494 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.059 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -51.28444 -48.82180 -48.74962 -42.70608 -41.51864 -39.70714 -38.60320 -38.10474 -37.55572 -37.43302 -37.25808 -34.45275 -32.06207 -31.65919 -28.70409 -28.29165 -27.73800 -27.24848 -26.82752 -24.32376 -23.69239 -22.51819 -21.86998 -20.76965 -20.09596 -19.74980 -19.55656 -19.37243 -18.92347 -18.84281 -18.12638 -17.45976 -17.23064 -16.97418 -16.85317 -16.48132 -16.03663 -15.85125 -15.80301 -15.70565 -15.63417 -15.40440 -15.26410 -15.16849 -15.03479 -14.92813 -14.83882 -14.75439 -14.69531 -14.43362 -14.23494 -14.06522 -13.88852 -13.79684 -13.58581 -13.44096 -13.33837 -13.19454 -13.06325 -12.83736 -12.75301 -12.52128 -12.32813 -12.26917 -12.24255 -12.15009 -12.09112 -11.87041 -11.46555 -10.83332 -10.66547 -10.13110 -9.89480 -5.17875 -1.31068 -0.31020 -0.18403 0.79555 0.94525 1.09815 1.49685 1.55273 1.88850 2.03061 2.05170 2.31938 2.51040 2.57423 2.66676 2.80184 3.06584 3.14528 3.17447 3.27742 3.31515 3.46825 3.47927 3.54443 3.81596 3.87572 3.89558 4.10407 4.16278 4.21124 4.29309 4.34276 4.35803 4.43494 4.46548 4.50646 4.58403 4.60201 4.65757 4.71096 4.82063 4.83268 4.85116 4.87295 4.98183 5.05501 5.40228 5.69703 6.64581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.341 6.341 3 C 0.043 3.957 4 C 0.432 3.568 5 F -0.178 7.178 6 F -0.187 7.187 7 F -0.181 7.181 8 C -0.139 4.139 9 C -0.100 4.100 10 H 0.118 0.882 11 C -0.624 4.624 12 S 2.575 3.425 13 O -0.973 6.973 14 O -0.965 6.965 15 O -0.656 6.656 16 C 0.060 3.940 17 C -0.063 4.063 18 C -0.154 4.154 19 C -0.088 4.088 20 C -0.012 4.012 21 Cl -0.042 7.042 22 C -0.104 4.104 23 C -0.085 4.085 24 C -0.112 4.112 25 O -0.548 6.548 26 Si 0.786 3.214 27 C -0.126 4.126 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.181 0.819 39 H 0.170 0.830 40 H 0.104 0.896 41 H 0.397 0.603 42 H -0.274 1.274 43 H -0.286 1.286 44 H 0.122 0.878 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 -3.996 -0.091 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.259 6.259 3 C 0.000 4.000 4 C 0.378 3.622 5 F -0.160 7.160 6 F -0.169 7.169 7 F -0.163 7.163 8 C -0.176 4.176 9 C -0.119 4.119 10 H 0.136 0.864 11 C -0.754 4.754 12 S 2.676 3.324 13 O -0.972 6.972 14 O -0.963 6.963 15 O -0.615 6.615 16 C 0.018 3.982 17 C -0.065 4.065 18 C -0.210 4.210 19 C -0.106 4.106 20 C -0.039 4.039 21 Cl -0.012 7.012 22 C -0.122 4.122 23 C -0.088 4.088 24 C -0.220 4.220 25 O -0.356 6.356 26 Si 0.688 3.312 27 C -0.164 4.164 28 H 0.138 0.862 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.116 0.884 33 H 0.202 0.798 34 H 0.188 0.812 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.198 0.802 39 H 0.187 0.813 40 H 0.122 0.878 41 H 0.248 0.752 42 H -0.200 1.200 43 H -0.213 1.213 44 H 0.140 0.860 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.390 -3.609 -0.222 7.342 hybrid contribution -0.620 1.221 -0.562 1.480 sum -7.011 -2.389 -0.784 7.448 Atomic orbital electron populations 1.23432 0.78341 1.05733 1.02411 1.88040 1.22379 1.21684 1.93830 1.23979 0.99598 0.86837 0.89575 1.21513 0.74137 0.78599 0.87990 1.93174 1.68674 1.57524 1.96619 1.93193 1.94947 1.70623 1.58116 1.93181 1.37040 1.89174 1.96881 1.23621 0.92210 1.06716 0.95086 1.21832 1.00347 0.94344 0.95387 0.86415 1.31042 1.21346 1.08325 1.14688 1.06019 0.78342 0.73958 0.74105 1.93573 1.62019 1.76188 1.65383 1.93611 1.81565 1.61581 1.59540 1.85680 1.89563 1.31473 1.54752 1.18042 0.94861 0.87274 0.98037 1.20259 0.93230 0.97311 0.95729 1.21589 0.95368 1.00063 1.03961 1.21235 1.00240 0.91970 0.97162 1.21124 0.94744 0.91080 0.96978 1.98435 1.97185 1.35461 1.70147 1.20956 0.97572 0.95981 0.97677 1.20446 0.95845 0.94801 0.97684 1.25720 0.99842 1.07469 0.88983 1.86553 1.95835 1.32582 1.20646 0.94555 0.74249 0.86112 0.76268 1.23653 0.99482 1.01410 0.91855 0.86173 0.90304 0.93811 0.85067 0.88375 0.79847 0.81193 0.87059 0.86772 0.90117 0.80150 0.81317 0.87848 0.75218 1.20044 1.21330 0.85970 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 10.46 113.37 1.19 1.22 16 2 O -0.34 1.52 8.38 -148.98 -1.25 0.28 16 3 C 0.04 -0.15 0.85 -10.27 -0.01 -0.16 16 4 C 0.43 0.28 2.53 71.98 0.18 0.46 16 5 F -0.18 -0.28 15.83 44.97 0.71 0.43 16 6 F -0.19 -0.91 17.09 44.97 0.77 -0.15 16 7 F -0.18 -0.08 15.23 44.97 0.68 0.61 16 8 C -0.14 0.40 6.89 31.12 0.21 0.61 16 9 C -0.10 0.54 3.84 -10.27 -0.04 0.50 16 10 H 0.12 -0.74 8.12 -2.38 -0.02 -0.76 16 11 C -0.62 3.54 3.46 71.98 0.25 3.78 16 12 S 2.57 13.56 4.85 -56.49 -0.27 13.29 16 13 O -0.97 -9.15 13.71 -118.57 -1.63 -10.77 16 14 O -0.96 -12.46 18.09 -118.57 -2.15 -14.60 16 15 O -0.66 -3.50 8.52 -61.72 -0.53 -4.03 16 16 C 0.06 0.15 4.83 22.50 0.11 0.26 16 17 C -0.06 0.27 5.41 -19.77 -0.11 0.16 16 18 C -0.15 1.67 7.88 71.23 0.56 2.24 16 19 C -0.09 0.53 9.51 22.28 0.21 0.74 16 20 C -0.01 0.04 6.32 22.33 0.14 0.18 16 21 Cl -0.04 0.14 28.95 -2.72 -0.08 0.07 16 22 C -0.10 0.15 8.44 22.28 0.19 0.34 16 23 C -0.08 -0.28 4.62 -19.77 -0.09 -0.37 16 24 C -0.11 -0.72 2.19 71.23 0.16 -0.56 16 25 O -0.55 -3.01 12.93 -148.98 -1.93 -4.94 16 26 Si 0.79 1.44 29.85 68.60 2.05 3.49 16 27 C -0.13 1.06 6.51 31.12 0.20 1.26 16 28 H 0.12 -1.51 8.14 -2.39 -0.02 -1.53 16 29 H 0.08 -1.07 6.77 -2.39 -0.02 -1.08 16 30 H 0.04 -0.26 6.19 -2.39 -0.01 -0.27 16 31 H 0.13 -0.59 7.00 -2.39 -0.02 -0.61 16 32 H 0.10 -0.09 8.10 -2.38 -0.02 -0.11 16 33 H 0.18 -2.35 7.00 -2.39 -0.02 -2.37 16 34 H 0.17 -1.33 3.92 -2.39 -0.01 -1.34 16 35 H 0.11 -1.63 5.78 -2.39 -0.01 -1.64 16 36 H 0.11 -1.69 8.13 -2.39 -0.02 -1.71 16 37 H 0.08 -0.84 6.66 -2.38 -0.02 -0.85 16 38 H 0.18 -2.17 8.06 -2.91 -0.02 -2.19 16 39 H 0.17 -1.03 5.16 -2.91 -0.02 -1.05 16 40 H 0.10 1.24 4.99 -2.39 -0.01 1.22 16 41 H 0.40 -2.05 8.61 -74.06 -0.64 -2.68 16 42 H -0.27 -1.78 7.11 99.48 0.71 -1.07 16 43 H -0.29 -2.34 7.11 99.48 0.71 -1.63 16 44 H 0.12 -1.58 6.68 -2.39 -0.02 -1.60 16 45 H 0.12 -1.22 8.08 -2.39 -0.02 -1.24 16 Total: 0.00 -28.24 388.76 0.05 -28.19 By element: Atomic # 1 Polarization: -23.03 SS G_CDS: 0.51 Total: -22.52 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 3.15 Total: 10.66 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -7.47 Total: -34.07 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 2.17 Total: 0.89 kcal Atomic # 14 Polarization: 1.44 SS G_CDS: 2.05 Total: 3.49 kcal Atomic # 16 Polarization: 13.56 SS G_CDS: -0.27 Total: 13.29 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.07 kcal Total: -28.24 0.05 -28.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8270826_17541816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.241 kcal (2) G-P(sol) polarization free energy of solvation -28.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds