Wall clock time and date at job start Mon Mar 8 2021 11:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.47234 * 2 1 4 4 C 1.86308 * 109.47306 * 239.99885 * 2 1 3 5 5 C 1.86306 * 109.46946 * 119.99990 * 2 1 3 6 6 C 1.52998 * 109.46744 * 60.00148 * 5 2 1 7 7 C 1.53005 * 109.46548 * 179.97438 * 6 5 2 8 8 S 1.81404 * 109.47080 * 179.97438 * 7 6 5 9 9 O 1.42100 * 110.54034 * 286.27694 * 8 7 6 10 10 O 1.42101 * 110.54454 * 63.02304 * 8 7 6 11 11 O 1.52193 * 104.45230 * 174.65294 * 8 7 6 12 12 C 1.35832 * 114.00178 * 79.13222 * 11 8 7 13 13 C 1.36616 * 120.21476 * 91.94704 * 12 11 8 14 14 C 1.50696 * 119.52948 * 359.97438 * 13 12 11 15 15 O 1.42900 * 109.47218 * 283.10727 * 14 13 12 16 16 Si 1.86293 * 109.47232 * 163.10572 * 14 13 12 17 17 H 1.48499 * 109.47085 * 59.99940 * 16 14 13 18 18 H 1.48497 * 109.47401 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47397 * 300.00370 * 16 14 13 20 20 C 1.39243 * 120.93794 * 179.77029 * 13 12 11 21 21 C 1.36238 * 121.05271 * 0.51019 * 20 13 12 22 22 Cl 1.73598 * 120.13156 * 179.72791 * 21 20 13 23 23 C 1.40660 * 119.73879 * 359.75106 * 21 20 13 24 24 C 1.40477 * 121.26937 * 179.97438 * 23 21 20 25 25 C 1.36144 * 119.65178 * 180.02562 * 24 23 21 26 26 C 1.39310 * 120.97270 * 359.97438 * 25 24 23 27 27 C 1.36170 * 120.97085 * 0.02562 * 26 25 24 28 28 C 1.40378 * 119.66512 * 359.97438 * 27 26 25 29 29 H 1.08991 * 109.47174 * 300.00190 * 1 2 3 30 30 H 1.09001 * 109.47044 * 60.00019 * 1 2 3 31 31 H 1.08998 * 109.47364 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46770 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47090 * 299.99953 * 3 2 1 34 34 H 1.08993 * 109.46775 * 60.00153 * 3 2 1 35 35 H 1.08998 * 109.47095 * 300.00392 * 4 2 1 36 36 H 1.09001 * 109.46991 * 60.00063 * 4 2 1 37 37 H 1.09000 * 109.46896 * 179.97438 * 4 2 1 38 38 H 1.08991 * 109.47037 * 299.99904 * 5 2 1 39 39 H 1.09008 * 109.46824 * 179.97438 * 5 2 1 40 40 H 1.08997 * 109.47308 * 60.00474 * 6 5 2 41 41 H 1.08998 * 109.47229 * 299.99556 * 6 5 2 42 42 H 1.08998 * 109.47261 * 60.00554 * 7 6 5 43 43 H 1.08998 * 109.47141 * 299.99791 * 7 6 5 44 44 H 1.08997 * 109.46946 * 43.10750 * 14 13 12 45 45 H 0.96696 * 114.00054 * 300.00357 * 15 14 13 46 46 H 1.08001 * 119.47638 * 180.26357 * 20 13 12 47 47 H 1.08003 * 120.17666 * 0.02562 * 24 23 21 48 48 H 1.08002 * 119.51597 * 180.02562 * 25 24 23 49 49 H 1.08002 * 119.51778 * 180.02562 * 26 25 24 50 50 H 1.08003 * 120.16935 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5212 6 6 1.9739 -2.3207 1.5211 7 6 2.4844 -3.0422 2.7701 8 16 1.8792 -4.7522 2.7705 9 8 0.4944 -4.7909 3.0870 10 8 2.3957 -5.4643 1.6545 11 8 2.5569 -5.3948 3.9722 12 6 1.9738 -5.0941 5.1616 13 6 1.0027 -5.9058 5.6758 14 6 0.5829 -7.1363 4.9140 15 8 -0.2650 -6.7579 3.8277 16 14 -0.3413 -8.2859 6.0518 17 1 -1.5455 -7.5964 6.5808 18 1 -0.7556 -9.4983 5.3010 19 1 0.5397 -8.6792 7.1807 20 6 0.3983 -5.6144 6.8960 21 6 0.7496 -4.5071 7.6076 22 17 -0.0245 -4.1631 9.1229 23 6 1.7417 -3.6433 7.1094 24 6 2.1284 -2.4924 7.8162 25 6 3.0919 -1.6789 7.3031 26 6 3.7026 -1.9705 6.0854 27 6 3.3529 -3.0772 5.3733 28 6 2.3632 -3.9394 5.8709 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.5740 1.7564 0.0005 33 1 2.1207 2.2703 -0.8900 34 1 2.1207 2.2702 0.8900 35 1 2.1207 -1.9059 -1.5212 36 1 2.1207 -0.3644 -2.4112 37 1 3.5741 -0.8778 -1.5213 38 1 2.1206 -0.3644 2.4111 39 1 3.5740 -0.8787 1.5210 40 1 2.3373 -2.8346 0.6312 41 1 0.8839 -2.3207 1.5211 42 1 2.1214 -2.5285 3.6603 43 1 3.5744 -3.0422 2.7696 44 1 1.4667 -7.6424 4.5258 45 1 -1.0728 -6.3013 4.0999 46 1 -0.3639 -6.2747 7.2825 47 1 1.6637 -2.2542 8.7616 48 1 3.3878 -0.7949 7.8485 49 1 4.4647 -1.3090 5.7004 50 1 3.8345 -3.2906 4.4305 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8272896_14927650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:29:53 Heat of formation + Delta-G solvation = -125.216833 kcal Electronic energy + Delta-G solvation = -35164.951972 eV Core-core repulsion = 30628.084710 eV Total energy + Delta-G solvation = -4536.867262 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 416.088 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.92121 -40.51735 -38.81930 -38.29595 -37.91980 -37.16927 -36.66496 -35.94726 -33.31348 -32.27366 -30.57606 -29.58384 -28.37981 -28.30342 -28.22366 -27.20305 -25.10062 -23.94951 -23.41526 -23.00159 -21.32344 -19.87631 -19.28986 -18.84138 -18.78670 -17.80656 -17.76712 -17.03989 -16.75950 -16.13802 -16.02165 -15.87761 -15.80531 -15.43339 -15.21538 -15.07356 -14.56696 -14.50354 -14.33644 -14.13119 -14.03315 -13.96253 -13.91687 -13.65957 -13.59964 -13.53563 -13.28783 -13.26125 -13.17151 -13.13920 -13.04642 -12.97417 -12.95464 -12.62604 -12.50144 -12.33821 -12.26234 -12.03312 -11.90375 -11.82819 -11.79071 -11.70195 -10.90472 -10.69940 -10.67808 -10.45595 -10.37642 -9.99247 -9.13235 -1.35708 -0.68044 -0.46083 0.54753 0.72170 0.99150 1.01231 1.36153 1.45623 1.51204 1.83892 1.92372 2.01324 2.03277 2.56208 2.63710 2.75016 2.91243 3.06395 3.27194 3.35356 3.49589 3.57982 3.64111 3.68079 3.82383 3.86422 4.12910 4.19180 4.22249 4.24103 4.38872 4.41466 4.48253 4.57611 4.62065 4.69421 4.78099 4.81923 4.84219 4.85840 4.87109 4.88402 4.88797 4.89008 4.91818 5.10882 5.24583 5.27236 5.35689 5.46688 5.60804 5.67161 5.67748 5.70470 6.72571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.474 4.474 2 Si 1.068 2.932 3 C -0.461 4.461 4 C -0.476 4.476 5 C -0.407 4.407 6 C -0.116 4.116 7 C -0.640 4.640 8 S 2.570 3.430 9 O -0.936 6.936 10 O -0.970 6.970 11 O -0.665 6.665 12 C 0.089 3.911 13 C -0.078 4.078 14 C -0.118 4.118 15 O -0.527 6.527 16 Si 0.982 3.018 17 H -0.228 1.228 18 H -0.263 1.263 19 H -0.244 1.244 20 C -0.118 4.118 21 C 0.000 4.000 22 Cl -0.034 7.034 23 C -0.046 4.046 24 C -0.104 4.104 25 C -0.098 4.098 26 C -0.079 4.079 27 C -0.148 4.148 28 C -0.062 4.062 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.116 0.884 45 H 0.392 0.608 46 H 0.162 0.838 47 H 0.151 0.849 48 H 0.163 0.837 49 H 0.166 0.834 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 6.993 4.738 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.260 2.740 3 C -0.568 4.568 4 C -0.581 4.581 5 C -0.493 4.493 6 C -0.155 4.155 7 C -0.770 4.770 8 S 2.670 3.330 9 O -0.935 6.935 10 O -0.968 6.968 11 O -0.623 6.623 12 C 0.047 3.953 13 C -0.081 4.081 14 C -0.227 4.227 15 O -0.335 6.335 16 Si 0.801 3.199 17 H -0.151 1.151 18 H -0.188 1.188 19 H -0.168 1.168 20 C -0.137 4.137 21 C -0.027 4.027 22 Cl -0.004 7.004 23 C -0.047 4.047 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.097 4.097 27 C -0.165 4.165 28 C -0.064 4.064 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.175 0.825 43 H 0.181 0.819 44 H 0.134 0.866 45 H 0.242 0.758 46 H 0.180 0.820 47 H 0.169 0.831 48 H 0.180 0.820 49 H 0.184 0.816 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.562 5.425 4.832 7.432 hybrid contribution 0.117 0.658 -0.256 0.716 sum 1.679 6.084 4.577 7.796 Atomic orbital electron populations 1.26430 1.22727 1.04308 1.04477 0.78321 0.65076 0.65545 0.65078 1.26242 1.06515 1.19584 1.04419 1.26462 1.06661 1.08298 1.16714 1.26206 1.07227 0.99098 1.16810 1.21188 1.02143 0.97976 0.94176 1.31337 1.14638 1.21179 1.09836 1.06191 0.74886 0.78491 0.73441 1.93628 1.32946 1.85945 1.80945 1.93586 1.81043 1.71444 1.50766 1.85663 1.69552 1.79084 1.28018 1.17541 0.96365 0.96838 0.84606 1.20203 0.94661 0.98008 0.95276 1.25476 1.01135 0.98537 0.97551 1.86594 1.36747 1.79397 1.30768 0.85264 0.80195 0.77619 0.76818 1.15084 1.18775 1.16760 1.20750 1.01535 0.97877 0.93490 1.20855 0.96095 0.95944 0.89837 1.98411 1.79044 1.94617 1.28362 1.17762 0.96235 0.96724 0.94015 1.21392 0.97894 0.92519 1.00362 1.21439 0.94449 1.00032 0.95649 1.21419 0.98557 0.95919 0.93811 1.21560 0.97131 0.95546 1.02293 1.18047 0.98982 0.94370 0.94966 0.90933 0.91584 0.91552 0.90973 0.91694 0.90934 0.91639 0.91583 0.90981 0.88723 0.88605 0.89926 0.89722 0.82508 0.81876 0.86598 0.75813 0.82046 0.83112 0.81979 0.81644 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.45 8.65 113.37 0.98 2.43 16 2 Si 1.07 -7.16 12.19 68.60 0.84 -6.32 16 3 C -0.46 2.31 8.65 113.37 0.98 3.29 16 4 C -0.48 1.23 8.65 113.37 0.98 2.21 16 5 C -0.41 2.99 4.45 71.98 0.32 3.31 16 6 C -0.12 0.37 4.59 30.60 0.14 0.51 16 7 C -0.64 1.86 4.01 71.98 0.29 2.15 16 8 S 2.57 17.58 5.08 -56.49 -0.29 17.30 16 9 O -0.94 -8.52 12.69 -114.92 -1.46 -9.98 16 10 O -0.97 -14.42 18.09 -118.57 -2.15 -16.57 16 11 O -0.66 -4.56 8.64 -60.76 -0.52 -5.08 16 12 C 0.09 0.47 4.67 22.57 0.11 0.57 16 13 C -0.08 -0.35 4.81 -20.00 -0.10 -0.45 16 14 C -0.12 -0.55 2.27 71.23 0.16 -0.38 16 15 O -0.53 -3.85 9.40 -125.52 -1.18 -5.03 16 16 Si 0.98 0.39 25.53 68.60 1.75 2.14 16 17 H -0.23 0.57 6.65 99.48 0.66 1.23 16 18 H -0.26 -0.91 7.11 99.48 0.71 -0.21 16 19 H -0.24 -0.06 7.11 99.48 0.71 0.65 16 20 C -0.12 -0.18 8.33 22.05 0.18 0.00 16 21 C 0.00 0.00 6.32 22.40 0.14 0.14 16 22 Cl -0.03 0.03 27.50 -2.72 -0.07 -0.04 16 23 C -0.05 -0.03 5.74 -21.29 -0.12 -0.15 16 24 C -0.10 0.38 9.44 22.33 0.21 0.60 16 25 C -0.10 0.72 9.95 22.04 0.22 0.94 16 26 C -0.08 0.60 9.95 22.05 0.22 0.82 16 27 C -0.15 0.51 6.76 22.31 0.15 0.66 16 28 C -0.06 -0.10 5.45 -21.23 -0.12 -0.22 16 29 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 30 H 0.06 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H 0.07 -0.14 7.79 -2.39 -0.02 -0.16 16 32 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 33 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 34 H 0.07 -0.40 7.96 -2.39 -0.02 -0.41 16 35 H 0.06 -0.10 7.79 -2.39 -0.02 -0.11 16 36 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 37 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 38 H 0.09 -0.89 7.96 -2.39 -0.02 -0.91 16 39 H 0.10 -0.92 7.96 -2.38 -0.02 -0.94 16 40 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 41 H 0.08 -0.34 7.79 -2.39 -0.02 -0.35 16 42 H 0.16 -0.94 5.80 -2.39 -0.01 -0.95 16 43 H 0.16 -1.34 6.74 -2.39 -0.02 -1.36 16 44 H 0.12 0.58 7.72 -2.39 -0.02 0.56 16 45 H 0.39 0.57 8.51 -74.06 -0.63 -0.06 16 46 H 0.16 -0.34 4.81 -2.91 -0.01 -0.35 16 47 H 0.15 -0.92 6.98 -2.91 -0.02 -0.94 16 48 H 0.16 -2.06 8.06 -2.91 -0.02 -2.08 16 49 H 0.17 -2.25 8.06 -2.91 -0.02 -2.27 16 50 H 0.15 -1.01 4.65 -2.91 -0.01 -1.02 16 Total: 0.00 -21.35 416.85 2.73 -18.62 By element: Atomic # 1 Polarization: -12.51 SS G_CDS: 1.06 Total: -11.46 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 4.75 Total: 16.43 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -5.31 Total: -36.66 kcal Atomic # 14 Polarization: -6.77 SS G_CDS: 2.59 Total: -4.18 kcal Atomic # 16 Polarization: 17.58 SS G_CDS: -0.29 Total: 17.30 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.04 kcal Total: -21.35 2.73 -18.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8272896_14927650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.596 kcal (2) G-P(sol) polarization free energy of solvation -21.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds