Wall clock time and date at job start Mon Mar 8 2021 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.47293 * 2 1 4 4 C 1.34227 * 117.00335 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99627 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00352 * 179.97438 * 4 3 2 7 7 H 1.08999 * 112.84741 * 311.20063 * 6 4 3 8 8 C 1.53779 * 113.61006 * 82.50323 * 6 4 3 9 9 C 1.53788 * 87.08111 * 139.98209 * 8 6 4 10 10 F 1.39898 * 113.69375 * 220.00803 * 9 8 6 11 11 C 1.53004 * 113.61388 * 89.11233 * 9 8 6 12 12 S 1.81398 * 109.46828 * 82.50775 * 11 9 8 13 13 O 1.42098 * 110.54549 * 63.05084 * 12 11 9 14 14 O 1.42100 * 110.54085 * 286.29950 * 12 11 9 15 15 O 1.52204 * 104.44811 * 174.67735 * 12 11 9 16 16 C 1.35833 * 113.99794 * 79.01932 * 15 12 11 17 17 C 1.40951 * 120.21312 * 272.02227 * 16 15 12 18 18 C 1.40418 * 121.28821 * 0.02562 * 17 16 15 19 19 C 1.36131 * 119.66332 * 179.72333 * 18 17 16 20 20 C 1.39367 * 120.97800 * 0.02562 * 19 18 17 21 21 C 1.36114 * 120.97209 * 359.97438 * 20 19 18 22 22 C 1.40527 * 119.65093 * 0.03926 * 21 20 19 23 23 C 1.40613 * 121.26912 * 180.02562 * 22 21 20 24 24 Cl 1.73601 * 120.12953 * 359.97438 * 23 22 21 25 25 C 1.36269 * 119.74491 * 179.97438 * 23 22 21 26 26 C 1.36647 * 120.21774 * 92.26178 * 16 15 12 27 27 C 1.50703 * 119.53169 * 0.02562 * 26 16 15 28 28 O 1.42898 * 109.47040 * 283.66722 * 27 26 16 29 29 Si 1.86301 * 109.47178 * 163.66929 * 27 26 16 30 30 C 1.53780 * 113.61418 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.46638 * 299.99641 * 1 2 3 32 32 H 1.08998 * 109.47414 * 59.99801 * 1 2 3 33 33 H 1.08997 * 109.47237 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46638 * 240.00359 * 2 1 3 35 35 H 1.09004 * 109.47078 * 120.00492 * 2 1 3 36 36 H 1.09001 * 113.61905 * 25.43841 * 8 6 4 37 37 H 1.09004 * 113.61930 * 254.52623 * 8 6 4 38 38 H 1.08994 * 109.46938 * 322.50849 * 11 9 8 39 39 H 1.08995 * 109.46736 * 202.50681 * 11 9 8 40 40 H 1.08001 * 120.17310 * 359.69747 * 18 17 16 41 41 H 1.07999 * 119.51399 * 179.97438 * 19 18 17 42 42 H 1.07998 * 119.51475 * 179.97438 * 20 19 18 43 43 H 1.07995 * 120.17147 * 180.02562 * 21 20 19 44 44 H 1.08000 * 119.48411 * 179.97438 * 25 23 22 45 45 H 1.08995 * 109.46938 * 43.66978 * 27 26 16 46 46 H 0.96701 * 114.00094 * 300.00215 * 28 27 26 47 47 H 1.48504 * 110.00092 * 58.68076 * 29 27 26 48 48 H 1.48499 * 109.99947 * 180.02562 * 29 27 26 49 49 H 1.09008 * 113.60719 * 105.47468 * 30 6 4 50 50 H 1.08992 * 113.69413 * 334.58618 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 1 3.4709 3.5811 -0.7570 8 6 3.9868 3.5772 1.3957 9 6 5.3569 4.1426 0.9856 10 9 6.3115 4.0997 2.0075 11 6 5.2766 5.5104 0.3047 12 16 5.1611 6.8083 1.5667 13 8 6.3324 6.8274 2.3710 14 8 3.8679 6.8174 2.1556 15 8 5.2246 8.1097 0.7801 16 6 4.0521 8.4546 0.1872 17 6 3.7438 7.9806 -1.1039 18 6 4.6297 7.1474 -1.8057 19 6 4.2959 6.7042 -3.0488 20 6 3.0858 7.0654 -3.6382 21 6 2.2028 7.8714 -2.9875 22 6 2.5134 8.3485 -1.7028 23 6 1.6260 9.1825 -0.9997 24 17 0.1128 9.6441 -1.7143 25 6 1.9585 9.6269 0.2449 26 6 3.1661 9.2673 0.8366 27 6 3.4992 9.7784 2.2147 28 8 3.3060 8.7333 3.1699 29 14 2.3864 11.2135 2.6306 30 6 5.4583 2.9680 -0.0011 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8900 36 1 4.0393 2.8508 2.2067 37 1 3.2299 4.3439 1.5611 38 1 4.3950 5.5464 -0.3352 39 1 6.1703 5.6689 -0.2987 40 1 5.5714 6.8600 -1.3618 41 1 4.9793 6.0638 -3.5866 42 1 2.8451 6.7005 -4.6258 43 1 1.2685 8.1428 -3.4563 44 1 1.2740 10.2676 0.7810 45 1 4.5386 10.1055 2.2393 46 1 2.4015 8.3928 3.2028 47 1 0.9649 10.7883 2.5692 48 1 2.7054 11.7270 3.9870 49 1 5.8895 3.2427 -0.9638 50 1 5.9141 2.0756 0.4277 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8272896_15494190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:09:36 Heat of formation + Delta-G solvation = -169.629604 kcal Electronic energy + Delta-G solvation = -44796.717124 eV Core-core repulsion = 39019.322442 eV Total energy + Delta-G solvation = -5777.394682 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 459.078 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -49.13728 -42.96253 -41.96046 -40.54594 -39.65415 -38.87036 -38.41131 -37.91832 -37.64720 -37.29829 -36.73025 -33.54832 -32.76946 -32.32382 -31.57014 -30.40822 -27.37899 -27.33690 -27.07001 -25.07973 -24.06579 -23.95082 -23.40468 -22.52862 -21.71402 -20.49840 -20.05250 -19.52252 -19.12761 -18.87801 -18.84852 -18.18036 -17.86081 -17.80325 -17.57804 -17.07984 -16.99402 -16.75549 -16.28538 -16.23407 -16.09205 -15.89810 -15.65898 -15.45390 -15.32890 -15.09030 -14.97396 -14.91712 -14.54296 -14.35375 -14.23503 -14.11115 -13.98073 -13.76564 -13.71473 -13.61740 -13.36909 -13.32028 -13.30175 -13.05680 -12.98395 -12.81318 -12.65141 -12.57179 -12.51147 -12.47430 -12.23708 -12.13833 -12.03650 -11.86853 -11.83391 -11.60641 -11.55006 -11.47679 -10.90741 -10.64478 -9.97096 -9.12680 -4.99016 -1.48170 -0.77868 -0.43244 0.54683 0.74600 0.89637 0.94728 1.14957 1.48878 1.50665 1.53812 1.90407 2.29012 2.53318 2.62994 2.70090 2.81598 2.89787 3.05423 3.09368 3.24023 3.31281 3.33920 3.48940 3.53417 3.66893 3.74102 3.83784 3.86274 3.94377 3.99013 4.00766 4.12006 4.19668 4.23587 4.27663 4.29395 4.36744 4.40961 4.42324 4.45332 4.52508 4.61096 4.68923 4.71931 4.79964 4.87234 4.87330 4.93851 4.96247 5.10281 5.24850 5.30021 5.37264 5.39375 5.73072 6.52018 6.55946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.357 6.357 4 C 0.474 3.526 5 O -0.533 6.533 6 C -0.096 4.096 7 H 0.170 0.830 8 C -0.156 4.156 9 C 0.091 3.909 10 F -0.203 7.203 11 C -0.664 4.664 12 S 2.585 3.415 13 O -0.959 6.959 14 O -0.927 6.927 15 O -0.658 6.658 16 C 0.078 3.922 17 C -0.057 4.057 18 C -0.156 4.156 19 C -0.073 4.073 20 C -0.099 4.099 21 C -0.099 4.099 22 C -0.044 4.044 23 C 0.005 3.995 24 Cl -0.032 7.032 25 C -0.112 4.112 26 C -0.065 4.065 27 C -0.121 4.121 28 O -0.522 6.522 29 Si 0.779 3.221 30 C -0.117 4.117 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.190 0.810 39 H 0.189 0.811 40 H 0.149 0.851 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.167 0.833 45 H 0.118 0.882 46 H 0.391 0.609 47 H -0.254 1.254 48 H -0.295 1.295 49 H 0.132 0.868 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 1.195 -10.806 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.318 3.682 5 O -0.423 6.423 6 C -0.115 4.115 7 H 0.187 0.813 8 C -0.194 4.194 9 C 0.072 3.928 10 F -0.183 7.183 11 C -0.790 4.790 12 S 2.681 3.319 13 O -0.958 6.958 14 O -0.925 6.925 15 O -0.616 6.616 16 C 0.035 3.965 17 C -0.059 4.059 18 C -0.173 4.173 19 C -0.091 4.091 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.045 4.045 23 C -0.023 4.023 24 Cl -0.003 7.003 25 C -0.131 4.131 26 C -0.069 4.069 27 C -0.228 4.228 28 O -0.331 6.331 29 Si 0.680 3.320 30 C -0.155 4.155 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.207 0.793 39 H 0.207 0.793 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.184 0.816 45 H 0.136 0.864 46 H 0.241 0.759 47 H -0.180 1.180 48 H -0.222 1.222 49 H 0.150 0.850 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.857 1.730 -9.557 11.342 hybrid contribution 0.229 -1.672 0.577 1.783 sum -5.628 0.059 -8.980 10.598 Atomic orbital electron populations 1.21832 0.90684 1.04272 1.03811 1.23287 0.96934 0.79181 1.02625 1.86517 1.23908 1.33617 1.83272 1.23671 0.80747 0.92464 0.71314 1.90695 1.61161 1.43994 1.46408 1.22414 0.97137 0.90934 1.01018 0.81258 1.23919 0.96003 1.02240 0.97202 1.21841 0.88624 0.94537 0.87802 1.92973 1.66616 1.97358 1.61338 1.31760 1.16866 1.10734 1.19677 1.05793 0.74598 0.75440 0.76022 1.93623 1.51635 1.85154 1.65349 1.93628 1.40683 1.83684 1.74547 1.85712 1.42541 1.59638 1.73749 1.17620 0.82659 1.03455 0.92720 1.17990 0.95592 1.00099 0.92215 1.21517 0.99813 0.98819 0.97173 1.21443 0.96854 0.97301 0.93488 1.21446 0.93071 0.95740 1.01380 1.21410 1.01340 0.96889 0.92087 1.17739 0.92329 0.98336 0.96099 1.20862 0.89306 0.97960 0.94127 1.98423 1.28329 1.90452 1.83078 1.20747 0.96102 1.01541 0.94676 1.20089 0.93231 0.96314 0.97258 1.25650 1.11291 1.00237 0.85670 1.86688 1.36300 1.52073 1.58038 0.94104 0.75789 0.79181 0.82917 1.23611 0.93751 0.96636 1.01493 0.91447 0.90920 0.88611 0.90940 0.91607 0.87573 0.86318 0.79308 0.79326 0.83315 0.81443 0.82067 0.83112 0.81620 0.86432 0.75884 1.17974 1.22208 0.85014 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.70 10.29 71.98 0.74 1.44 16 2 C 0.05 -0.02 6.19 71.98 0.45 0.42 16 3 O -0.36 -0.55 10.22 -51.39 -0.53 -1.08 16 4 C 0.47 1.04 7.48 71.24 0.53 1.58 16 5 O -0.53 -4.61 15.65 21.95 0.34 -4.27 16 6 C -0.10 0.43 3.91 -11.02 -0.04 0.39 16 7 H 0.17 -2.01 7.66 -2.39 -0.02 -2.03 16 8 C -0.16 0.21 7.09 31.12 0.22 0.43 16 9 C 0.09 -0.02 1.79 -10.28 -0.02 -0.04 16 10 F -0.20 -1.71 16.09 44.97 0.72 -0.99 16 11 C -0.66 2.81 3.60 71.98 0.26 3.07 16 12 S 2.58 16.58 4.89 -56.49 -0.28 16.30 16 13 O -0.96 -15.73 17.25 -118.57 -2.05 -17.78 16 14 O -0.93 -7.05 12.30 -114.93 -1.41 -8.46 16 15 O -0.66 -3.23 8.64 -60.77 -0.53 -3.76 16 16 C 0.08 0.17 4.66 22.56 0.11 0.27 16 17 C -0.06 0.13 5.44 -21.23 -0.12 0.02 16 18 C -0.16 1.17 6.76 22.31 0.15 1.32 16 19 C -0.07 0.85 9.95 22.05 0.22 1.07 16 20 C -0.10 1.09 9.95 22.05 0.22 1.30 16 21 C -0.10 0.73 9.44 22.33 0.21 0.94 16 22 C -0.04 0.15 5.74 -21.29 -0.12 0.02 16 23 C 0.01 -0.01 6.32 22.39 0.14 0.13 16 24 Cl -0.03 0.12 27.50 -2.72 -0.07 0.05 16 25 C -0.11 0.22 8.33 22.04 0.18 0.40 16 26 C -0.06 -0.10 4.82 -20.00 -0.10 -0.20 16 27 C -0.12 -0.38 2.28 71.24 0.16 -0.22 16 28 O -0.52 -3.88 9.42 -125.55 -1.18 -5.07 16 29 Si 0.78 -1.24 30.27 68.60 2.08 0.84 16 30 C -0.12 0.44 6.88 31.11 0.21 0.65 16 31 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 32 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.07 -0.04 8.13 -2.38 -0.02 -0.06 16 35 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.11 0.05 8.09 -2.39 -0.02 0.03 16 37 H 0.12 -0.40 7.69 -2.39 -0.02 -0.41 16 38 H 0.19 -2.00 5.02 -2.39 -0.01 -2.01 16 39 H 0.19 -2.03 6.73 -2.39 -0.02 -2.05 16 40 H 0.15 -1.59 4.69 -2.91 -0.01 -1.61 16 41 H 0.17 -2.94 8.06 -2.91 -0.02 -2.96 16 42 H 0.16 -2.55 8.06 -2.91 -0.02 -2.57 16 43 H 0.15 -1.41 6.98 -2.91 -0.02 -1.43 16 44 H 0.17 -0.86 4.78 -2.91 -0.01 -0.87 16 45 H 0.12 0.44 7.74 -2.39 -0.02 0.42 16 46 H 0.39 0.82 8.49 -74.06 -0.63 0.19 16 47 H -0.25 0.32 6.61 99.48 0.66 0.98 16 48 H -0.29 -1.79 7.11 99.48 0.71 -1.08 16 49 H 0.13 -1.37 8.10 -2.38 -0.02 -1.39 16 50 H 0.10 0.06 7.44 -2.39 -0.02 0.04 16 Total: 0.00 -30.34 427.09 0.92 -29.42 By element: Atomic # 1 Polarization: -18.63 SS G_CDS: 0.40 Total: -18.23 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 3.41 Total: 13.01 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -5.35 Total: -40.41 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.72 Total: -0.99 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.08 Total: 0.84 kcal Atomic # 16 Polarization: 16.58 SS G_CDS: -0.28 Total: 16.30 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -0.07 Total: 0.05 kcal Total: -30.34 0.92 -29.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8272896_15494190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.207 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds