Wall clock time and date at job start Mon Mar 8 2021 12:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.46983 * 2 1 4 4 C 1.50701 * 109.46901 * 119.99753 * 2 1 3 5 5 C 1.39195 * 119.53267 * 255.60981 * 4 2 1 6 6 C 1.36269 * 121.04017 * 180.26164 * 5 4 2 7 7 Cl 1.73601 * 120.12663 * 179.74171 * 6 5 4 8 8 C 1.40603 * 119.74627 * 359.76974 * 6 5 4 9 9 C 1.40531 * 121.27080 * 179.97438 * 8 6 5 10 10 C 1.36108 * 119.65001 * 180.02562 * 9 8 6 11 11 C 1.39357 * 120.98075 * 0.02562 * 10 9 8 12 12 C 1.36138 * 120.97315 * 359.97289 * 11 10 9 13 13 C 1.40421 * 119.66563 * 0.02562 * 12 11 10 14 14 C 1.36645 * 119.52790 * 75.37532 * 4 2 1 15 15 O 1.35835 * 120.22100 * 359.97438 * 14 4 2 16 16 S 1.52208 * 113.99889 * 84.73089 * 15 14 4 17 17 O 1.42100 * 104.27756 * 320.80938 * 16 15 14 18 18 O 1.42101 * 104.27356 * 192.94606 * 16 15 14 19 19 C 1.81407 * 104.44509 * 76.87871 * 16 15 14 20 20 H 1.08998 * 112.84523 * 43.20090 * 19 16 15 21 21 C 1.53777 * 113.60942 * 174.39654 * 19 16 15 22 22 C 1.53788 * 87.07752 * 139.98073 * 21 19 16 23 23 H 1.09001 * 113.61444 * 219.93070 * 22 21 19 24 24 O 1.42898 * 113.61387 * 89.11703 * 22 21 19 25 25 C 1.42902 * 114.00186 * 150.00298 * 24 22 21 26 26 C 1.50702 * 109.46940 * 180.02562 * 25 24 22 27 27 C 1.38222 * 120.00530 * 89.99830 * 26 25 24 28 28 C 1.38241 * 120.00505 * 180.25262 * 27 26 25 29 29 C 1.38238 * 119.99404 * 359.50575 * 28 27 26 30 30 C 1.38234 * 119.99833 * 0.47370 * 29 28 27 31 31 C 1.38233 * 120.00219 * 359.75898 * 30 29 28 32 32 C 1.53779 * 113.61047 * 271.89586 * 19 16 15 33 33 H 0.96691 * 114.00081 * 305.03798 * 1 2 3 34 34 H 1.08995 * 109.47309 * 239.99911 * 2 1 3 35 35 H 1.48497 * 109.99875 * 178.68195 * 3 2 1 36 36 H 1.48502 * 110.00116 * 300.00024 * 3 2 1 37 37 H 1.08001 * 119.47925 * 0.02562 * 5 4 2 38 38 H 1.07997 * 120.17389 * 0.02562 * 9 8 6 39 39 H 1.08000 * 119.50737 * 180.02562 * 10 9 8 40 40 H 1.07991 * 119.51293 * 179.97438 * 11 10 9 41 41 H 1.08010 * 120.16615 * 180.02562 * 12 11 10 42 42 H 1.09002 * 113.61865 * 25.43285 * 21 19 16 43 43 H 1.08999 * 113.68833 * 254.53497 * 21 19 16 44 44 H 1.08989 * 109.47454 * 59.99357 * 25 24 22 45 45 H 1.09006 * 109.46348 * 299.99327 * 25 24 22 46 46 H 1.08008 * 120.00310 * 359.97438 * 27 26 25 47 47 H 1.07995 * 120.00624 * 179.72317 * 28 27 26 48 48 H 1.07994 * 120.00095 * 180.25465 * 29 28 27 49 49 H 1.08010 * 119.99611 * 179.78855 * 30 29 28 50 50 H 1.08000 * 120.00124 * 180.02562 * 31 30 29 51 51 H 1.08996 * 113.61622 * 105.47402 * 32 19 16 52 52 H 1.08999 * 113.61566 * 334.56219 * 32 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4438 0.0323 2.2904 6 6 2.9111 -0.5785 3.4153 7 17 3.5514 0.3707 4.7202 8 6 2.8732 -1.9805 3.5148 9 6 3.3470 -2.6436 4.6597 10 6 3.2950 -4.0023 4.7207 11 6 2.7787 -4.7487 3.6632 12 6 2.3109 -4.1401 2.5388 13 6 2.3482 -2.7399 2.4397 14 6 1.8728 -2.0742 1.2919 15 8 1.3649 -2.7842 0.2512 16 16 2.3748 -3.0787 -0.8488 17 8 3.1409 -1.8862 -0.9497 18 8 1.5840 -3.5359 -1.9373 19 6 3.3860 -4.4305 -0.1846 20 1 2.7926 -5.1986 0.3113 21 6 4.4022 -4.9922 -1.1928 22 6 5.3969 -5.0777 -0.0231 23 1 6.4131 -4.7894 -0.2920 24 8 5.3411 -6.3169 0.6864 25 6 6.5860 -6.7108 1.2671 26 6 6.4119 -8.0239 1.9857 27 6 6.6147 -9.2132 1.3112 28 6 6.4499 -10.4178 1.9690 29 6 6.0922 -10.4328 3.3042 30 6 5.8898 -9.2434 3.9789 31 6 6.0500 -8.0389 3.3198 32 6 4.5902 -3.9500 0.6423 33 1 -0.3933 0.5071 0.7232 34 1 1.7924 -0.5138 -0.8899 35 1 3.5346 1.7703 0.0321 36 1 1.5615 2.4679 -1.2085 37 1 2.4750 1.1095 2.2185 38 1 3.7501 -2.0781 5.4867 39 1 3.6593 -4.5095 5.6019 40 1 2.7492 -5.8257 3.7366 41 1 1.9131 -4.7313 1.7271 42 1 4.6940 -4.2780 -1.9628 43 1 4.1233 -5.9638 -1.6006 44 1 6.9139 -5.9495 1.9748 45 1 7.3337 -6.8231 0.4818 46 1 6.8975 -9.2015 0.2689 47 1 6.6039 -11.3471 1.4408 48 1 5.9674 -11.3738 3.8193 49 1 5.6070 -9.2552 5.0213 50 1 5.8922 -7.1097 3.8470 51 1 4.4620 -4.0804 1.7168 52 1 4.9334 -2.9509 0.3740 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8272896_15608174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:19:01 Heat of formation + Delta-G solvation = -51.690665 kcal Electronic energy + Delta-G solvation = -43994.328488 eV Core-core repulsion = 38625.505768 eV Total energy + Delta-G solvation = -5368.822720 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 461.088 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -43.00752 -40.92248 -40.52829 -39.96099 -38.92673 -38.55211 -37.93061 -37.57191 -37.07688 -36.75510 -33.33533 -32.68506 -32.27994 -31.80044 -30.50348 -27.57498 -27.38481 -27.04167 -26.54892 -24.98068 -24.00860 -23.49014 -23.40811 -22.28398 -21.96372 -21.03648 -20.20568 -19.37124 -19.03414 -18.86716 -18.45582 -17.78984 -17.72459 -17.44442 -17.11678 -16.81826 -16.65781 -16.43827 -16.18661 -16.03758 -15.81334 -15.52546 -15.36726 -15.27065 -15.24009 -14.98143 -14.77972 -14.37719 -14.30517 -14.27869 -14.15940 -14.08600 -13.97287 -13.75627 -13.72151 -13.63367 -13.49785 -13.41718 -13.26818 -13.19957 -12.58000 -12.49294 -12.42493 -12.24136 -12.13859 -12.08537 -12.01726 -11.88268 -11.85449 -11.75648 -11.31508 -10.90637 -10.67860 -10.57045 -9.97140 -9.83249 -9.77987 -9.11266 -5.16387 -1.45418 -0.78717 -0.43635 0.31575 0.49039 0.54874 0.70391 0.84629 1.09948 1.49642 1.57591 1.89733 2.23344 2.36241 2.44295 2.66711 2.92172 3.03242 3.09044 3.13877 3.28157 3.37992 3.40789 3.48145 3.53857 3.70233 3.77851 3.83688 3.88689 3.92476 4.12576 4.13967 4.17294 4.19909 4.25211 4.28243 4.32284 4.34814 4.39660 4.43524 4.44721 4.57647 4.61259 4.64290 4.67212 4.70382 4.73960 4.77339 4.78138 4.89176 4.93112 5.07016 5.14468 5.25272 5.29896 5.38287 5.53871 5.61630 5.63956 5.71494 6.07791 6.15430 6.63153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.122 4.122 3 Si 0.792 3.208 4 C -0.073 4.073 5 C -0.103 4.103 6 C 0.007 3.993 7 Cl -0.026 7.026 8 C -0.045 4.045 9 C -0.099 4.099 10 C -0.095 4.095 11 C -0.080 4.080 12 C -0.131 4.131 13 C -0.047 4.047 14 C 0.077 3.923 15 O -0.657 6.657 16 S 2.575 3.425 17 O -0.964 6.964 18 O -0.970 6.970 19 C -0.617 4.617 20 H 0.174 0.826 21 C -0.116 4.116 22 C 0.087 3.913 23 H 0.110 0.890 24 O -0.367 6.367 25 C 0.100 3.900 26 C -0.106 4.106 27 C -0.114 4.114 28 C -0.137 4.137 29 C -0.126 4.126 30 C -0.132 4.132 31 C -0.105 4.105 32 C -0.133 4.133 33 H 0.398 0.602 34 H 0.106 0.894 35 H -0.267 1.267 36 H -0.286 1.286 37 H 0.176 0.824 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.128 0.872 47 H 0.133 0.867 48 H 0.135 0.865 49 H 0.141 0.859 50 H 0.140 0.860 51 H 0.107 0.893 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -1.089 9.363 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.229 4.229 3 Si 0.693 3.307 4 C -0.077 4.077 5 C -0.121 4.121 6 C -0.021 4.021 7 Cl 0.004 6.996 8 C -0.046 4.046 9 C -0.116 4.116 10 C -0.113 4.113 11 C -0.098 4.098 12 C -0.149 4.149 13 C -0.049 4.049 14 C 0.035 3.965 15 O -0.616 6.616 16 S 2.677 3.323 17 O -0.962 6.962 18 O -0.968 6.968 19 C -0.728 4.728 20 H 0.191 0.809 21 C -0.155 4.155 22 C 0.028 3.972 23 H 0.128 0.872 24 O -0.286 6.286 25 C 0.024 3.976 26 C -0.106 4.106 27 C -0.132 4.132 28 C -0.155 4.155 29 C -0.144 4.144 30 C -0.149 4.149 31 C -0.123 4.123 32 C -0.172 4.172 33 H 0.248 0.752 34 H 0.123 0.877 35 H -0.193 1.193 36 H -0.214 1.214 37 H 0.193 0.807 38 H 0.173 0.827 39 H 0.180 0.820 40 H 0.170 0.830 41 H 0.149 0.851 42 H 0.132 0.868 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.146 0.854 47 H 0.151 0.849 48 H 0.153 0.847 49 H 0.159 0.841 50 H 0.158 0.842 51 H 0.125 0.875 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.611 -0.475 8.051 9.824 hybrid contribution -0.094 -1.196 -0.733 1.406 sum 5.517 -1.671 7.318 9.316 Atomic orbital electron populations 1.86565 1.16417 1.77443 1.55295 1.25963 0.85936 1.14115 0.96900 0.94484 0.78872 0.72157 0.85148 1.20191 0.97764 0.92381 0.97338 1.20569 0.99300 1.01426 0.90797 1.20825 0.98898 0.91167 0.91192 1.98422 1.84158 1.70528 1.46498 1.17736 1.00708 0.91017 0.95116 1.21381 0.98279 0.95704 0.96267 1.21364 0.96902 0.93556 0.99454 1.21282 0.94604 1.01981 0.91891 1.21139 1.01373 0.91863 1.00534 1.17877 0.99980 0.94831 0.92190 1.17722 1.02677 0.89478 0.86632 1.85666 1.58908 1.74485 1.42534 1.06080 0.74423 0.77282 0.74534 1.93549 1.73496 1.43541 1.85629 1.93593 1.67839 1.83732 1.51615 1.32184 1.11040 1.17852 1.11736 0.80850 1.23058 0.92978 1.03900 0.95553 1.22778 0.99103 0.84216 0.91144 0.87248 1.87951 1.32737 1.37467 1.70423 1.21523 0.85956 0.93245 0.96842 1.19762 1.01940 0.94232 0.94645 1.21298 0.99358 0.92332 1.00242 1.21431 1.00139 0.98516 0.95407 1.21531 0.98648 0.99293 0.94880 1.21474 1.00046 0.92348 1.01066 1.21320 0.97911 0.99070 0.93998 1.23528 0.91300 1.00543 1.01813 0.75203 0.87686 1.19254 1.21366 0.80728 0.82682 0.82004 0.82980 0.85062 0.86830 0.87671 0.90668 0.91215 0.85397 0.84921 0.84695 0.84112 0.84209 0.87457 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.82 12.93 -148.98 -1.93 -5.74 16 2 C -0.12 -0.90 2.11 71.24 0.15 -0.75 16 3 Si 0.79 1.23 29.79 68.60 2.04 3.27 16 4 C -0.07 -0.36 4.58 -20.01 -0.09 -0.46 16 5 C -0.10 0.06 8.33 22.04 0.18 0.24 16 6 C 0.01 -0.01 6.32 22.39 0.14 0.13 16 7 Cl -0.03 0.10 27.50 -2.72 -0.07 0.02 16 8 C -0.04 0.04 5.74 -21.29 -0.12 -0.08 16 9 C -0.10 0.52 9.44 22.33 0.21 0.73 16 10 C -0.10 0.73 9.95 22.04 0.22 0.95 16 11 C -0.08 0.46 9.62 22.05 0.21 0.67 16 12 C -0.13 0.16 6.11 22.31 0.14 0.30 16 13 C -0.05 -0.08 4.53 -21.23 -0.10 -0.18 16 14 C 0.08 0.49 4.74 22.56 0.11 0.60 16 15 O -0.66 -6.56 8.76 -60.79 -0.53 -7.10 16 16 S 2.57 24.09 4.83 -56.49 -0.27 23.81 16 17 O -0.96 -10.47 12.59 -118.57 -1.49 -11.96 16 18 O -0.97 -17.20 18.09 -118.57 -2.15 -19.34 16 19 C -0.62 -0.40 2.81 31.12 0.09 -0.32 16 20 H 0.17 -0.31 6.11 -2.39 -0.01 -0.32 16 21 C -0.12 0.19 7.50 31.12 0.23 0.42 16 22 C 0.09 -0.32 4.38 31.12 0.14 -0.19 16 23 H 0.11 -0.85 7.87 -2.39 -0.02 -0.86 16 24 O -0.37 0.50 10.25 -148.98 -1.53 -1.02 16 25 C 0.10 -0.38 5.90 71.24 0.42 0.04 16 26 C -0.11 0.09 5.51 -19.87 -0.11 -0.02 16 27 C -0.11 -0.03 9.70 22.27 0.22 0.19 16 28 C -0.14 0.00 10.05 22.27 0.22 0.23 16 29 C -0.13 0.12 10.05 22.27 0.22 0.34 16 30 C -0.13 0.29 10.05 22.27 0.22 0.51 16 31 C -0.11 0.24 9.70 22.27 0.22 0.46 16 32 C -0.13 0.34 6.08 31.12 0.19 0.53 16 33 H 0.40 -1.56 8.61 -74.06 -0.64 -2.20 16 34 H 0.11 1.37 4.77 -2.39 -0.01 1.36 16 35 H -0.27 -1.36 7.11 99.48 0.71 -0.65 16 36 H -0.29 -2.29 7.11 99.48 0.71 -1.58 16 37 H 0.18 -1.10 5.06 -2.91 -0.01 -1.12 16 38 H 0.16 -1.28 6.98 -2.91 -0.02 -1.30 16 39 H 0.16 -2.13 8.06 -2.91 -0.02 -2.15 16 40 H 0.15 -1.42 8.06 -2.92 -0.02 -1.45 16 41 H 0.13 -0.22 5.27 -2.91 -0.02 -0.24 16 42 H 0.11 -0.44 8.10 -2.39 -0.02 -0.46 16 43 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.08 -0.50 8.09 -2.39 -0.02 -0.52 16 45 H 0.07 -0.39 8.09 -2.38 -0.02 -0.41 16 46 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 47 H 0.13 -0.39 8.06 -2.91 -0.02 -0.41 16 48 H 0.14 -0.57 8.06 -2.91 -0.02 -0.60 16 49 H 0.14 -0.89 8.06 -2.91 -0.02 -0.91 16 50 H 0.14 -0.93 8.06 -2.91 -0.02 -0.96 16 51 H 0.11 -0.41 5.56 -2.39 -0.01 -0.42 16 52 H 0.11 -0.29 7.34 -2.39 -0.02 -0.31 16 Total: 0.00 -27.29 438.53 -2.41 -29.70 By element: Atomic # 1 Polarization: -16.40 SS G_CDS: 0.41 Total: -15.99 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 3.11 Total: 4.35 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -7.62 Total: -45.17 kcal Atomic # 14 Polarization: 1.23 SS G_CDS: 2.04 Total: 3.27 kcal Atomic # 16 Polarization: 24.09 SS G_CDS: -0.27 Total: 23.81 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.07 Total: 0.02 kcal Total: -27.29 -2.41 -29.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8272896_15608174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.991 kcal (2) G-P(sol) polarization free energy of solvation -27.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds