Wall clock time and date at job start Mon Mar 8 2021 13:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00104 * 2 1 4 4 C 1.53003 * 112.84703 * 69.54473 * 3 2 1 5 5 F 1.39903 * 109.46904 * 54.65987 * 4 3 2 6 6 F 1.39903 * 109.47126 * 174.65426 * 4 3 2 7 7 F 1.39897 * 109.47350 * 294.65720 * 4 3 2 8 8 C 1.53781 * 113.61593 * 298.34876 * 3 2 1 9 9 C 1.53775 * 87.08184 * 270.88369 * 8 3 2 10 10 H 1.09002 * 113.61135 * 219.93557 * 9 8 3 11 11 C 1.52998 * 113.61953 * 89.11512 * 9 8 3 12 12 S 1.81393 * 109.47512 * 174.99879 * 11 9 8 13 13 O 1.42104 * 110.54085 * 291.62555 * 12 11 9 14 14 O 1.42103 * 110.54329 * 68.37641 * 12 11 9 15 15 O 1.52197 * 104.44952 * 180.02562 * 12 11 9 16 16 C 1.35840 * 114.00038 * 75.00107 * 15 12 11 17 17 C 1.40947 * 120.21383 * 269.72106 * 16 15 12 18 18 C 1.40425 * 121.28665 * 0.56438 * 17 16 15 19 19 C 1.36130 * 119.66221 * 179.70755 * 18 17 16 20 20 C 1.39358 * 120.97761 * 359.74347 * 19 18 17 21 21 C 1.36111 * 120.97938 * 0.02562 * 20 19 18 22 22 C 1.40533 * 119.64733 * 359.97438 * 21 20 19 23 23 C 1.40605 * 121.27450 * 180.02562 * 22 21 20 24 24 Cl 1.73605 * 120.12538 * 359.95077 * 23 22 21 25 25 C 1.36271 * 119.75015 * 179.97438 * 23 22 21 26 26 C 1.36652 * 120.21422 * 90.00087 * 16 15 12 27 27 C 1.50697 * 119.53143 * 359.97438 * 26 16 15 28 28 O 1.42900 * 109.46928 * 75.00292 * 27 26 16 29 29 Si 1.86300 * 109.46959 * 195.00081 * 27 26 16 30 30 C 1.53781 * 87.08311 * 334.56425 * 9 8 3 31 31 H 1.08998 * 109.47248 * 53.64483 * 1 2 3 32 32 H 1.09002 * 109.47181 * 173.65138 * 1 2 3 33 33 H 1.09002 * 109.46737 * 293.64250 * 1 2 3 34 34 H 1.09003 * 113.61319 * 25.43560 * 8 3 2 35 35 H 1.09000 * 113.61174 * 156.33221 * 8 3 2 36 36 H 1.09001 * 109.46997 * 295.00112 * 11 9 8 37 37 H 1.09001 * 109.46560 * 54.99558 * 11 9 8 38 38 H 1.08002 * 120.16690 * 359.42471 * 18 17 16 39 39 H 1.07999 * 119.51196 * 179.72368 * 19 18 17 40 40 H 1.08000 * 119.51231 * 179.97438 * 20 19 18 41 41 H 1.07998 * 120.18002 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.48186 * 179.97438 * 25 23 22 43 43 H 1.09001 * 109.47179 * 314.99637 * 27 26 16 44 44 H 0.96694 * 114.00041 * 60.00027 * 28 27 26 45 45 H 1.48502 * 110.00106 * 58.68364 * 29 27 26 46 46 H 1.48505 * 110.00117 * 180.02562 * 29 27 26 47 47 H 1.08997 * 113.61992 * 270.88578 * 30 9 8 48 48 H 1.09005 * 113.61410 * 139.97970 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.8017 2.0486 1.3211 5 9 2.2786 1.2648 2.3773 6 9 2.4984 3.2614 1.2889 7 9 0.4377 2.2990 1.5050 8 6 1.6496 2.1404 -1.2400 9 6 2.8896 1.5302 -1.9144 10 1 3.4516 2.2412 -2.5200 11 6 2.6048 0.2187 -2.6491 12 16 4.1001 -0.3226 -3.5217 13 8 4.3979 0.5596 -4.5952 14 8 5.1039 -0.7142 -2.5952 15 8 3.6925 -1.6201 -4.2049 16 6 2.9071 -1.4451 -5.2994 17 6 1.5040 -1.4179 -5.1685 18 6 0.8856 -1.5575 -3.9155 19 6 -0.4723 -1.5203 -3.8265 20 6 -1.2608 -1.3401 -4.9613 21 6 -0.6960 -1.1967 -6.1914 22 6 0.7029 -1.2298 -6.3221 23 6 1.3224 -1.0847 -7.5759 24 17 0.3595 -0.8604 -9.0029 25 6 2.6816 -1.1211 -7.6668 26 6 3.4721 -1.3001 -6.5351 27 6 4.9722 -1.3351 -6.6748 28 8 5.4311 -2.6823 -6.5472 29 14 5.4559 -0.6699 -8.3464 30 6 3.4637 1.3327 -0.5015 31 1 -0.3633 0.6092 -0.8276 32 1 -0.3634 -1.0214 -0.1136 33 1 -0.3633 0.4121 0.9414 34 1 0.7094 1.8458 -1.7064 35 1 1.7247 3.2158 -1.0792 36 1 2.3081 -0.5440 -1.9292 37 1 1.8001 0.3724 -3.3681 38 1 1.4841 -1.6982 -3.0275 39 1 -0.9455 -1.6324 -2.8622 40 1 -2.3361 -1.3148 -4.8635 41 1 -1.3194 -1.0574 -7.0622 42 1 3.1529 -1.0096 -8.6321 43 1 5.4241 -0.7218 -5.8951 44 1 5.0687 -3.2857 -7.2102 45 1 4.9567 0.7198 -8.5039 46 1 6.9330 -0.6996 -8.4969 47 1 4.0349 2.1873 -0.1388 48 1 3.9882 0.3859 -0.3718 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8272896_17541816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:14:15 Heat of formation + Delta-G solvation = -231.529916 kcal Electronic energy + Delta-G solvation = -46689.437553 eV Core-core repulsion = 40417.359054 eV Total energy + Delta-G solvation = -6272.078500 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 467.059 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -51.22968 -48.78728 -48.65552 -43.05041 -41.71730 -40.65584 -38.93189 -38.38162 -38.02902 -37.53733 -37.30004 -36.82238 -33.70827 -32.52611 -31.84822 -30.60982 -28.70039 -27.93810 -27.37273 -27.00575 -25.22881 -24.09080 -23.83721 -23.54082 -21.85659 -20.82850 -20.22318 -19.72110 -19.54193 -19.47183 -19.17912 -18.98155 -18.88060 -17.92418 -17.84409 -17.50893 -17.09617 -16.70844 -16.55128 -16.26682 -16.15297 -15.99821 -15.82619 -15.57460 -15.54738 -15.49413 -15.37923 -15.35342 -15.17394 -15.04454 -14.90281 -14.82684 -14.74527 -14.52107 -14.45211 -14.06257 -13.95913 -13.83285 -13.60293 -13.47586 -13.43159 -13.32047 -13.25960 -13.18591 -12.78229 -12.68106 -12.58376 -12.56766 -12.40543 -12.28418 -12.21229 -12.01379 -11.95556 -11.63306 -11.05949 -10.96607 -10.58241 -10.17480 -9.29631 -5.12313 -1.49110 -0.84557 -0.62373 0.36266 0.62529 0.84475 1.14662 1.32764 1.46325 1.62335 1.86710 1.96717 2.29638 2.41579 2.43286 2.52377 2.68762 2.69319 2.87750 2.96455 3.07596 3.11115 3.24048 3.27165 3.36504 3.40481 3.43691 3.49731 3.66077 3.68319 3.87723 3.91241 3.93488 3.98115 4.07210 4.08928 4.16486 4.18780 4.28640 4.31488 4.36395 4.37200 4.41792 4.48626 4.53505 4.57620 4.60341 4.65654 4.75087 4.99708 5.08662 5.13050 5.41706 5.48570 6.47471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.333 6.333 3 C 0.043 3.957 4 C 0.439 3.561 5 F -0.172 7.172 6 F -0.174 7.174 7 F -0.181 7.181 8 C -0.138 4.138 9 C -0.091 4.091 10 H 0.111 0.889 11 C -0.649 4.649 12 S 2.582 3.418 13 O -0.948 6.948 14 O -0.910 6.910 15 O -0.644 6.644 16 C 0.097 3.903 17 C -0.049 4.049 18 C -0.128 4.128 19 C -0.088 4.088 20 C -0.103 4.103 21 C -0.092 4.092 22 C -0.034 4.034 23 C 0.004 3.996 24 Cl -0.034 7.034 25 C -0.096 4.096 26 C -0.062 4.062 27 C -0.090 4.090 28 O -0.527 6.527 29 Si 0.689 3.311 30 C -0.126 4.126 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.156 0.844 43 H 0.127 0.873 44 H 0.380 0.620 45 H -0.244 1.244 46 H -0.243 1.243 47 H 0.125 0.875 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.360 -0.351 -4.262 8.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.251 6.251 3 C 0.000 4.000 4 C 0.384 3.616 5 F -0.153 7.153 6 F -0.156 7.156 7 F -0.163 7.163 8 C -0.176 4.176 9 C -0.111 4.111 10 H 0.129 0.871 11 C -0.774 4.774 12 S 2.678 3.322 13 O -0.946 6.946 14 O -0.908 6.908 15 O -0.602 6.602 16 C 0.055 3.945 17 C -0.051 4.051 18 C -0.146 4.146 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.110 4.110 22 C -0.034 4.034 23 C -0.024 4.024 24 Cl -0.005 7.005 25 C -0.114 4.114 26 C -0.066 4.066 27 C -0.200 4.200 28 O -0.332 6.332 29 Si 0.588 3.412 30 C -0.163 4.163 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.176 0.824 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.173 0.827 43 H 0.144 0.856 44 H 0.227 0.773 45 H -0.168 1.168 46 H -0.168 1.168 47 H 0.143 0.857 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.823 0.171 -4.412 7.308 hybrid contribution -1.120 0.437 1.466 1.895 sum -6.943 0.608 -2.947 7.567 Atomic orbital electron populations 1.23257 0.79462 1.04260 1.02185 1.88048 1.21244 1.21922 1.93839 1.23882 0.99890 0.86633 0.89553 1.21134 0.74051 0.78268 0.88101 1.93232 1.88000 1.74117 1.60000 1.93191 1.79160 1.46568 1.96667 1.93173 1.32458 1.94470 1.96153 1.23612 0.99543 1.01002 0.93452 1.21715 0.99157 0.94312 0.95885 0.87133 1.31249 1.23469 1.08112 1.14616 1.06012 0.76999 0.73555 0.75634 1.93632 1.83027 1.66771 1.51174 1.93684 1.53133 1.79622 1.64401 1.85742 1.69784 1.58318 1.46392 1.17381 0.87022 1.06485 0.83616 1.17878 0.90451 1.02198 0.94552 1.21217 0.96162 1.01214 0.96024 1.21019 0.93174 0.96845 0.99556 1.21072 1.01039 0.97883 0.92053 1.21209 0.92443 0.98239 0.99139 1.17568 0.94133 1.01531 0.90215 1.20769 0.91906 1.01465 0.88251 1.98424 1.71053 1.94822 1.36175 1.20468 0.91589 1.00904 0.98471 1.20167 0.98041 0.97016 0.91373 1.25500 0.89926 0.89657 1.14913 1.86620 1.70549 1.17428 1.58586 0.95447 0.82992 0.83728 0.79047 1.23468 0.92168 1.06871 0.93808 0.92455 0.88033 0.92170 0.88275 0.86633 0.82434 0.83518 0.84452 0.84670 0.84532 0.83864 0.82693 0.85575 0.77279 1.16768 1.16761 0.85729 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.32 101.05 1.04 1.03 16 2 O -0.33 0.28 8.52 -35.23 -0.30 -0.02 16 3 C 0.04 -0.04 0.79 -89.80 -0.07 -0.11 16 4 C 0.44 0.32 2.68 37.16 0.10 0.42 16 5 F -0.17 -0.44 17.26 2.25 0.04 -0.40 16 6 F -0.17 -0.14 15.72 2.25 0.04 -0.10 16 7 F -0.18 -0.15 14.97 2.25 0.03 -0.12 16 8 C -0.14 0.39 6.62 -25.92 -0.17 0.22 16 9 C -0.09 0.18 3.84 -89.81 -0.35 -0.17 16 10 H 0.11 -0.34 8.13 -51.93 -0.42 -0.76 16 11 C -0.65 1.01 3.61 37.16 0.13 1.15 16 12 S 2.58 6.08 4.89 -107.50 -0.53 5.55 16 13 O -0.95 -3.57 14.20 -67.04 -0.95 -4.53 16 14 O -0.91 -4.95 18.09 -67.03 -1.21 -6.16 16 15 O -0.64 -1.69 8.76 -51.56 -0.45 -2.14 16 16 C 0.10 0.16 4.77 -39.13 -0.19 -0.03 16 17 C -0.05 0.00 5.22 -106.72 -0.56 -0.55 16 18 C -0.13 0.25 6.83 -39.52 -0.27 -0.02 16 19 C -0.09 0.31 9.95 -39.92 -0.40 -0.08 16 20 C -0.10 0.36 9.95 -39.93 -0.40 -0.03 16 21 C -0.09 0.22 9.44 -39.48 -0.37 -0.15 16 22 C -0.03 0.02 5.74 -106.82 -0.61 -0.59 16 23 C 0.00 0.00 6.32 -39.40 -0.25 -0.25 16 24 Cl -0.03 0.06 27.50 -51.86 -1.43 -1.37 16 25 C -0.10 0.08 8.33 -39.93 -0.33 -0.25 16 26 C -0.06 -0.07 4.65 -104.84 -0.49 -0.56 16 27 C -0.09 -0.18 2.18 36.00 0.08 -0.10 16 28 O -0.53 -0.86 12.88 -35.23 -0.45 -1.32 16 29 Si 0.69 -0.12 29.86 -169.99 -5.08 -5.19 16 30 C -0.13 0.13 6.92 -25.92 -0.18 -0.05 16 31 H 0.06 -0.26 6.31 -51.93 -0.33 -0.59 16 32 H 0.10 -0.49 8.14 -51.93 -0.42 -0.91 16 33 H 0.06 -0.13 6.32 -51.93 -0.33 -0.45 16 34 H 0.10 -0.42 6.40 -51.93 -0.33 -0.75 16 35 H 0.12 -0.43 7.68 -51.93 -0.40 -0.83 16 36 H 0.16 -0.40 4.86 -51.92 -0.25 -0.65 16 37 H 0.15 -0.48 5.66 -51.92 -0.29 -0.78 16 38 H 0.14 -0.41 5.11 -52.49 -0.27 -0.68 16 39 H 0.14 -0.81 8.06 -52.49 -0.42 -1.23 16 40 H 0.14 -0.77 8.06 -52.49 -0.42 -1.19 16 41 H 0.14 -0.51 6.98 -52.49 -0.37 -0.88 16 42 H 0.16 -0.54 5.04 -52.49 -0.26 -0.80 16 43 H 0.13 0.52 5.31 -51.93 -0.28 0.24 16 44 H 0.38 -1.25 8.70 45.56 0.40 -0.86 16 45 H -0.24 -0.45 7.11 56.52 0.40 -0.05 16 46 H -0.24 -0.63 7.11 56.52 0.40 -0.23 16 47 H 0.12 -0.29 7.31 -51.93 -0.38 -0.67 16 48 H 0.11 -0.04 8.10 -51.93 -0.42 -0.46 16 LS Contribution 411.19 15.07 6.20 6.20 Total: 0.00 -10.50 411.19 -11.77 -22.26 By element: Atomic # 1 Polarization: -8.14 SS G_CDS: -4.40 Total: -12.54 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -3.28 Total: -0.13 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -3.37 Total: -14.16 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.11 Total: -0.62 kcal Atomic # 14 Polarization: -0.12 SS G_CDS: -5.08 Total: -5.19 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -0.53 Total: 5.55 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.43 Total: -1.37 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -10.50 -11.77 -22.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8272896_17541816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.265 kcal (2) G-P(sol) polarization free energy of solvation -10.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds