Wall clock time and date at job start Mon Mar 8 2021 13:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00104 * 2 1 4 4 C 1.53003 * 112.84703 * 69.54473 * 3 2 1 5 5 F 1.39903 * 109.46904 * 54.65987 * 4 3 2 6 6 F 1.39903 * 109.47126 * 174.65426 * 4 3 2 7 7 F 1.39897 * 109.47350 * 294.65720 * 4 3 2 8 8 C 1.53781 * 113.61593 * 298.34876 * 3 2 1 9 9 C 1.53775 * 87.08184 * 270.88369 * 8 3 2 10 10 H 1.09002 * 113.61135 * 219.93557 * 9 8 3 11 11 C 1.52998 * 113.61953 * 89.11512 * 9 8 3 12 12 S 1.81393 * 109.47512 * 174.99879 * 11 9 8 13 13 O 1.42104 * 110.54085 * 291.62555 * 12 11 9 14 14 O 1.42103 * 110.54329 * 68.37641 * 12 11 9 15 15 O 1.52197 * 104.44952 * 180.02562 * 12 11 9 16 16 C 1.35840 * 114.00038 * 75.00107 * 15 12 11 17 17 C 1.40947 * 120.21383 * 269.72106 * 16 15 12 18 18 C 1.40425 * 121.28665 * 0.56438 * 17 16 15 19 19 C 1.36130 * 119.66221 * 179.70755 * 18 17 16 20 20 C 1.39358 * 120.97761 * 359.74347 * 19 18 17 21 21 C 1.36111 * 120.97938 * 0.02562 * 20 19 18 22 22 C 1.40533 * 119.64733 * 359.97438 * 21 20 19 23 23 C 1.40605 * 121.27450 * 180.02562 * 22 21 20 24 24 Cl 1.73605 * 120.12538 * 359.95077 * 23 22 21 25 25 C 1.36271 * 119.75015 * 179.97438 * 23 22 21 26 26 C 1.36652 * 120.21422 * 90.00087 * 16 15 12 27 27 C 1.50697 * 119.53143 * 359.97438 * 26 16 15 28 28 O 1.42900 * 109.46928 * 75.00292 * 27 26 16 29 29 Si 1.86300 * 109.46959 * 195.00081 * 27 26 16 30 30 C 1.53781 * 87.08311 * 334.56425 * 9 8 3 31 31 H 1.08998 * 109.47248 * 53.64483 * 1 2 3 32 32 H 1.09002 * 109.47181 * 173.65138 * 1 2 3 33 33 H 1.09002 * 109.46737 * 293.64250 * 1 2 3 34 34 H 1.09003 * 113.61319 * 25.43560 * 8 3 2 35 35 H 1.09000 * 113.61174 * 156.33221 * 8 3 2 36 36 H 1.09001 * 109.46997 * 295.00112 * 11 9 8 37 37 H 1.09001 * 109.46560 * 54.99558 * 11 9 8 38 38 H 1.08002 * 120.16690 * 359.42471 * 18 17 16 39 39 H 1.07999 * 119.51196 * 179.72368 * 19 18 17 40 40 H 1.08000 * 119.51231 * 179.97438 * 20 19 18 41 41 H 1.07998 * 120.18002 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.48186 * 179.97438 * 25 23 22 43 43 H 1.09001 * 109.47179 * 314.99637 * 27 26 16 44 44 H 0.96694 * 114.00041 * 60.00027 * 28 27 26 45 45 H 1.48502 * 110.00106 * 58.68364 * 29 27 26 46 46 H 1.48505 * 110.00117 * 180.02562 * 29 27 26 47 47 H 1.08997 * 113.61992 * 270.88578 * 30 9 8 48 48 H 1.09005 * 113.61410 * 139.97970 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.8017 2.0486 1.3211 5 9 2.2786 1.2648 2.3773 6 9 2.4984 3.2614 1.2889 7 9 0.4377 2.2990 1.5050 8 6 1.6496 2.1404 -1.2400 9 6 2.8896 1.5302 -1.9144 10 1 3.4516 2.2412 -2.5200 11 6 2.6048 0.2187 -2.6491 12 16 4.1001 -0.3226 -3.5217 13 8 4.3979 0.5596 -4.5952 14 8 5.1039 -0.7142 -2.5952 15 8 3.6925 -1.6201 -4.2049 16 6 2.9071 -1.4451 -5.2994 17 6 1.5040 -1.4179 -5.1685 18 6 0.8856 -1.5575 -3.9155 19 6 -0.4723 -1.5203 -3.8265 20 6 -1.2608 -1.3401 -4.9613 21 6 -0.6960 -1.1967 -6.1914 22 6 0.7029 -1.2298 -6.3221 23 6 1.3224 -1.0847 -7.5759 24 17 0.3595 -0.8604 -9.0029 25 6 2.6816 -1.1211 -7.6668 26 6 3.4721 -1.3001 -6.5351 27 6 4.9722 -1.3351 -6.6748 28 8 5.4311 -2.6823 -6.5472 29 14 5.4559 -0.6699 -8.3464 30 6 3.4637 1.3327 -0.5015 31 1 -0.3633 0.6092 -0.8276 32 1 -0.3634 -1.0214 -0.1136 33 1 -0.3633 0.4121 0.9414 34 1 0.7094 1.8458 -1.7064 35 1 1.7247 3.2158 -1.0792 36 1 2.3081 -0.5440 -1.9292 37 1 1.8001 0.3724 -3.3681 38 1 1.4841 -1.6982 -3.0275 39 1 -0.9455 -1.6324 -2.8622 40 1 -2.3361 -1.3148 -4.8635 41 1 -1.3194 -1.0574 -7.0622 42 1 3.1529 -1.0096 -8.6321 43 1 5.4241 -0.7218 -5.8951 44 1 5.0687 -3.2857 -7.2102 45 1 4.9567 0.7198 -8.5039 46 1 6.9330 -0.6996 -8.4969 47 1 4.0349 2.1873 -0.1388 48 1 3.9882 0.3859 -0.3718 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8272896_17541816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:14:13 Heat of formation + Delta-G solvation = -231.501139 kcal Electronic energy + Delta-G solvation = -46689.436305 eV Core-core repulsion = 40417.359054 eV Total energy + Delta-G solvation = -6272.077252 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 467.059 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -51.27941 -48.81920 -48.75108 -43.01196 -41.57152 -40.57305 -38.90911 -38.56505 -37.94734 -37.54667 -37.33387 -36.76677 -33.54007 -32.40318 -31.75967 -30.47422 -28.48320 -27.87366 -27.34708 -26.80274 -25.10118 -23.99993 -23.76907 -23.44067 -21.82305 -20.74662 -20.23839 -19.71229 -19.58392 -19.46366 -19.09311 -19.02063 -18.89633 -17.92669 -17.77310 -17.36234 -17.05757 -16.59385 -16.51424 -16.16481 -16.08681 -15.93573 -15.70976 -15.60653 -15.52193 -15.51078 -15.33856 -15.25985 -15.14859 -15.00986 -14.93761 -14.82985 -14.65452 -14.42258 -14.36693 -14.18428 -14.07889 -13.74734 -13.64935 -13.49315 -13.44229 -13.27352 -13.23259 -12.95287 -12.65494 -12.58044 -12.41565 -12.37868 -12.27304 -12.25023 -12.09814 -12.02862 -11.88684 -11.52033 -10.90210 -10.82472 -10.65626 -9.99904 -9.15213 -5.16802 -1.49408 -0.80910 -0.46669 0.51513 0.69501 0.83635 1.09106 1.47323 1.48904 1.57084 1.89150 2.04484 2.23747 2.49698 2.53363 2.59647 2.69346 2.78653 3.00060 3.02661 3.15372 3.26239 3.26922 3.36457 3.43856 3.45801 3.54372 3.69018 3.80207 3.82347 4.10665 4.13075 4.16907 4.23294 4.24095 4.34040 4.36891 4.37410 4.41448 4.42956 4.49499 4.57997 4.61501 4.67458 4.70449 4.78954 4.83729 4.86937 4.91285 5.21808 5.27802 5.36735 5.69623 5.70914 6.63042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.345 6.345 3 C 0.042 3.958 4 C 0.434 3.566 5 F -0.188 7.188 6 F -0.177 7.177 7 F -0.182 7.182 8 C -0.126 4.126 9 C -0.098 4.098 10 H 0.121 0.879 11 C -0.623 4.623 12 S 2.573 3.427 13 O -0.972 6.972 14 O -0.957 6.957 15 O -0.655 6.655 16 C 0.073 3.927 17 C -0.058 4.058 18 C -0.146 4.146 19 C -0.075 4.075 20 C -0.097 4.097 21 C -0.100 4.100 22 C -0.046 4.046 23 C 0.006 3.994 24 Cl -0.025 7.025 25 C -0.103 4.103 26 C -0.074 4.074 27 C -0.112 4.112 28 O -0.546 6.546 29 Si 0.791 3.209 30 C -0.139 4.139 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.047 0.953 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.098 0.902 44 H 0.399 0.601 45 H -0.269 1.269 46 H -0.285 1.285 47 H 0.133 0.867 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -0.112 -4.944 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.264 6.264 3 C 0.000 4.000 4 C 0.379 3.621 5 F -0.170 7.170 6 F -0.158 7.158 7 F -0.163 7.163 8 C -0.164 4.164 9 C -0.118 4.118 10 H 0.139 0.861 11 C -0.752 4.752 12 S 2.674 3.326 13 O -0.970 6.970 14 O -0.955 6.955 15 O -0.613 6.613 16 C 0.031 3.969 17 C -0.059 4.059 18 C -0.164 4.164 19 C -0.093 4.093 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.046 4.046 23 C -0.022 4.022 24 Cl 0.004 6.996 25 C -0.121 4.121 26 C -0.078 4.078 27 C -0.220 4.220 28 O -0.355 6.355 29 Si 0.692 3.308 30 C -0.176 4.176 31 H 0.097 0.903 32 H 0.139 0.861 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.160 0.840 39 H 0.184 0.816 40 H 0.182 0.818 41 H 0.172 0.828 42 H 0.193 0.807 43 H 0.115 0.885 44 H 0.249 0.751 45 H -0.195 1.195 46 H -0.212 1.212 47 H 0.151 0.849 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.196 0.370 -5.103 10.523 hybrid contribution -0.191 0.340 1.751 1.794 sum -9.387 0.710 -3.352 9.993 Atomic orbital electron populations 1.23500 0.78257 1.05934 1.02452 1.88043 1.22634 1.21882 1.93794 1.23954 0.99910 0.87029 0.89145 1.21501 0.73882 0.78230 0.88444 1.93195 1.88227 1.74563 1.60966 1.93181 1.79232 1.46745 1.96680 1.93168 1.32450 1.94487 1.96202 1.23665 0.99724 1.01341 0.91636 1.21827 1.00150 0.94285 0.95492 0.86131 1.31059 1.20763 1.08688 1.14713 1.06081 0.78070 0.73231 0.75217 1.93590 1.84192 1.67162 1.52059 1.93618 1.56280 1.80427 1.65225 1.85698 1.70407 1.58180 1.47036 1.17743 0.87909 1.07854 0.83382 1.17996 0.89571 1.02648 0.95728 1.21391 0.97184 1.02279 0.95509 1.21406 0.92354 0.94524 1.00992 1.21449 1.02464 0.96112 0.91396 1.21420 0.91673 0.98336 1.00326 1.17771 0.95009 1.01884 0.89977 1.20866 0.91940 1.00678 0.88669 1.98425 1.70753 1.94712 1.35698 1.20590 0.91771 1.01188 0.98600 1.20210 0.97558 0.97879 0.92174 1.25768 0.90883 0.89602 1.15739 1.86559 1.71082 1.17886 1.59963 0.94406 0.79197 0.80959 0.76247 1.23603 0.92588 1.06650 0.94797 0.90306 0.86129 0.93402 0.86122 0.85452 0.81176 0.81201 0.83969 0.81627 0.81842 0.82836 0.80716 0.88472 0.75057 1.19453 1.21209 0.84918 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 0.05 10.32 113.37 1.17 1.22 16 2 O -0.35 0.88 8.52 -148.98 -1.27 -0.39 16 3 C 0.04 -0.09 0.79 -10.26 -0.01 -0.10 16 4 C 0.43 0.64 2.68 71.98 0.19 0.83 16 5 F -0.19 -1.14 17.26 44.97 0.78 -0.36 16 6 F -0.18 -0.30 15.72 44.97 0.71 0.41 16 7 F -0.18 -0.21 14.97 44.97 0.67 0.46 16 8 C -0.13 0.93 6.62 31.12 0.21 1.14 16 9 C -0.10 0.41 3.84 -10.27 -0.04 0.37 16 10 H 0.12 -0.73 8.13 -2.39 -0.02 -0.75 16 11 C -0.62 1.98 3.61 71.98 0.26 2.24 16 12 S 2.57 18.11 4.89 -56.49 -0.28 17.84 16 13 O -0.97 -10.01 14.20 -118.57 -1.68 -11.69 16 14 O -0.96 -13.79 18.09 -118.57 -2.15 -15.94 16 15 O -0.65 -4.99 8.76 -60.84 -0.53 -5.53 16 16 C 0.07 0.34 4.77 22.56 0.11 0.45 16 17 C -0.06 0.02 5.22 -21.23 -0.11 -0.09 16 18 C -0.15 0.77 6.83 22.31 0.15 0.92 16 19 C -0.08 0.77 9.95 22.05 0.22 0.99 16 20 C -0.10 1.00 9.95 22.04 0.22 1.22 16 21 C -0.10 0.68 9.44 22.33 0.21 0.89 16 22 C -0.05 0.10 5.74 -21.29 -0.12 -0.02 16 23 C 0.01 -0.01 6.32 22.39 0.14 0.13 16 24 Cl -0.03 0.11 27.50 -2.72 -0.07 0.04 16 25 C -0.10 0.13 8.33 22.04 0.18 0.32 16 26 C -0.07 -0.29 4.65 -20.01 -0.09 -0.39 16 27 C -0.11 -0.72 2.18 71.24 0.15 -0.56 16 28 O -0.55 -3.07 12.88 -148.98 -1.92 -4.99 16 29 Si 0.79 0.79 29.86 68.60 2.05 2.84 16 30 C -0.14 0.18 6.92 31.12 0.22 0.40 16 31 H 0.08 -0.99 6.31 -2.39 -0.02 -1.01 16 32 H 0.12 -1.47 8.14 -2.39 -0.02 -1.49 16 33 H 0.05 -0.25 6.32 -2.39 -0.02 -0.27 16 34 H 0.12 -1.41 6.40 -2.39 -0.02 -1.43 16 35 H 0.13 -1.19 7.68 -2.39 -0.02 -1.21 16 36 H 0.17 -0.93 4.86 -2.39 -0.01 -0.94 16 37 H 0.17 -1.33 5.66 -2.39 -0.01 -1.34 16 38 H 0.14 -0.98 5.11 -2.91 -0.01 -0.99 16 39 H 0.17 -2.73 8.06 -2.91 -0.02 -2.75 16 40 H 0.16 -2.56 8.06 -2.91 -0.02 -2.58 16 41 H 0.15 -1.43 6.98 -2.91 -0.02 -1.45 16 42 H 0.18 -1.21 5.04 -2.91 -0.01 -1.22 16 43 H 0.10 1.17 5.31 -2.39 -0.01 1.16 16 44 H 0.40 -2.00 8.70 -74.06 -0.64 -2.64 16 45 H -0.27 -1.29 7.11 99.48 0.71 -0.58 16 46 H -0.28 -2.12 7.11 99.48 0.71 -1.41 16 47 H 0.13 -0.49 7.31 -2.39 -0.02 -0.51 16 48 H 0.10 0.14 8.10 -2.38 -0.02 0.12 16 Total: 0.00 -28.52 411.19 -0.14 -28.66 By element: Atomic # 1 Polarization: -21.79 SS G_CDS: 0.50 Total: -21.29 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 3.06 Total: 9.95 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -7.55 Total: -38.53 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 2.16 Total: 0.51 kcal Atomic # 14 Polarization: 0.79 SS G_CDS: 2.05 Total: 2.84 kcal Atomic # 16 Polarization: 18.11 SS G_CDS: -0.28 Total: 17.84 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.07 Total: 0.04 kcal Total: -28.52 -0.14 -28.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8272896_17541816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.841 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds