Wall clock time and date at job start Mon Mar 8 2021 13:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 117.00073 * 2 1 4 4 O 1.20833 * 120.00038 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00117 * 179.97438 * 3 2 1 6 6 H 1.09003 * 112.84796 * 48.80436 * 5 3 2 7 7 C 1.53785 * 113.61714 * 179.97438 * 5 3 2 8 8 C 1.53783 * 87.07913 * 140.06690 * 7 5 3 9 9 H 1.08995 * 113.60928 * 89.20383 * 8 7 5 10 10 S 1.81396 * 113.61297 * 220.01796 * 8 7 5 11 11 O 1.42104 * 110.54202 * 68.38218 * 10 8 7 12 12 O 1.42098 * 110.54780 * 291.63020 * 10 8 7 13 13 O 1.52200 * 104.44918 * 180.02562 * 10 8 7 14 14 C 1.35899 * 114.00187 * 75.00263 * 13 10 8 15 15 C 1.38755 * 120.02667 * 89.99694 * 14 13 10 16 16 C 1.50699 * 119.97077 * 359.75256 * 15 14 13 17 17 O 1.42901 * 109.47437 * 74.99760 * 16 15 14 18 18 Si 1.86302 * 109.46886 * 194.99884 * 16 15 14 19 19 C 1.38195 * 120.05111 * 179.72977 * 15 14 13 20 20 C 1.38152 * 120.11104 * 359.97436 * 19 15 14 21 21 C 1.38788 * 120.05700 * 0.02562 * 20 19 15 22 22 O 1.35898 * 120.03140 * 180.02562 * 21 20 19 23 23 C 1.42905 * 116.99463 * 0.02562 * 22 21 20 24 24 C 1.50704 * 109.46637 * 180.02562 * 23 22 21 25 25 C 1.38234 * 119.99460 * 269.71905 * 24 23 22 26 26 C 1.38238 * 119.99707 * 179.76546 * 25 24 23 27 27 C 1.38236 * 120.00009 * 0.51504 * 26 25 24 28 28 C 1.38235 * 119.99531 * 359.74143 * 27 26 25 29 29 C 1.38232 * 120.00618 * 359.97438 * 28 27 26 30 30 C 1.38612 * 119.94410 * 0.03667 * 21 20 19 31 31 C 1.53774 * 87.08214 * 334.56996 * 8 7 5 32 32 H 1.08995 * 109.46719 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47051 * 299.99914 * 1 2 3 34 34 H 1.09000 * 109.46913 * 59.99900 * 1 2 3 35 35 H 1.08997 * 113.60848 * 25.52031 * 7 5 3 36 36 H 1.08996 * 113.69463 * 254.62847 * 7 5 3 37 37 H 1.09004 * 109.47132 * 314.99545 * 16 15 14 38 38 H 0.96698 * 113.99435 * 59.99877 * 17 16 15 39 39 H 1.48501 * 109.99949 * 58.68066 * 18 16 15 40 40 H 1.48500 * 110.00197 * 179.97438 * 18 16 15 41 41 H 1.07999 * 119.93794 * 180.02562 * 19 15 14 42 42 H 1.07999 * 119.96849 * 180.02562 * 20 19 15 43 43 H 1.09005 * 109.46690 * 299.99584 * 23 22 21 44 44 H 1.08996 * 109.47230 * 59.99875 * 23 22 21 45 45 H 1.07999 * 120.00386 * 0.02562 * 25 24 23 46 46 H 1.07996 * 120.00118 * 180.22652 * 26 25 24 47 47 H 1.08000 * 120.00003 * 179.71990 * 27 26 25 48 48 H 1.08007 * 119.99529 * 179.97438 * 28 27 26 49 49 H 1.07999 * 120.00493 * 179.97438 * 29 28 27 50 50 H 1.07999 * 120.05518 * 180.02562 * 30 21 20 51 51 H 1.09005 * 113.61379 * 139.97912 * 31 8 7 52 52 H 1.09002 * 113.61430 * 270.88103 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 1 4.0239 0.6362 -0.7550 7 6 4.1078 2.7142 -0.0001 8 6 5.1821 2.2268 0.9865 9 1 6.0819 1.8495 0.5008 10 16 5.5413 3.4110 2.3128 11 8 4.4305 3.5279 3.1913 12 8 6.1868 4.5641 1.7905 13 8 6.6131 2.7288 3.1510 14 6 7.8459 2.7298 2.5793 15 6 8.7232 3.7769 2.8226 16 6 8.3063 4.9161 3.7167 17 8 8.3379 4.4880 5.0798 18 14 9.4781 6.3462 3.4877 19 6 9.9791 3.7758 2.2459 20 6 10.3645 2.7324 1.4265 21 6 9.4907 1.6827 1.1801 22 8 9.8706 0.6563 0.3744 23 6 11.1839 0.7227 -0.1850 24 6 11.4258 -0.4916 -1.0441 25 6 11.9761 -1.6320 -0.4896 26 6 12.1935 -2.7475 -1.2766 27 6 11.8704 -2.7190 -2.6203 28 6 11.3250 -1.5768 -3.1759 29 6 11.1022 -0.4633 -2.3877 30 6 8.2300 1.6821 1.7562 31 6 4.1926 1.1236 1.3969 32 1 -0.3632 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 3.4178 3.4404 0.4294 36 1 4.5101 3.0304 -0.9625 37 1 7.2950 5.2299 3.4578 38 1 9.2089 4.1940 5.3795 39 1 9.4782 6.7803 2.0675 40 1 9.0775 7.4764 4.3636 41 1 10.6606 4.5915 2.4368 42 1 11.3467 2.7336 0.9774 43 1 11.2744 1.6221 -0.7940 44 1 11.9199 0.7523 0.6184 45 1 12.2324 -1.6529 0.5593 46 1 12.6201 -3.6398 -0.8426 47 1 12.0445 -3.5890 -3.2362 48 1 11.0730 -1.5544 -4.2259 49 1 10.6764 0.4293 -2.8219 50 1 7.5487 0.8660 1.5660 51 1 4.6631 0.1543 1.5618 52 1 3.5257 1.4150 2.2084 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8697352_13206342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:52:35 Heat of formation + Delta-G solvation = -156.775066 kcal Electronic energy + Delta-G solvation = -41228.529607 eV Core-core repulsion = 35834.037775 eV Total energy + Delta-G solvation = -5394.491832 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 435.126 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.58824 -42.01350 -40.97999 -39.87349 -39.67698 -38.75421 -38.52121 -37.58544 -37.52588 -37.19048 -33.42588 -32.10099 -31.79887 -31.44024 -29.96690 -27.86256 -27.75569 -27.22030 -26.36476 -24.87781 -23.52209 -23.50254 -23.14781 -22.41795 -21.55552 -20.90104 -20.06242 -19.55278 -19.09093 -18.67192 -18.35409 -18.07316 -17.82029 -17.67743 -17.55012 -17.04299 -16.96524 -16.89119 -16.53273 -16.22437 -16.10681 -15.79903 -15.53072 -15.33846 -15.13848 -14.84720 -14.59275 -14.53182 -14.38040 -14.26512 -14.15562 -13.98835 -13.90284 -13.84534 -13.80717 -13.68808 -13.51382 -13.44186 -13.32091 -13.31366 -13.09177 -12.84789 -12.44137 -12.30830 -12.09485 -12.08224 -11.98383 -11.92362 -11.87813 -11.76995 -11.71476 -11.41097 -10.53747 -10.23586 -9.82925 -9.81156 -9.42949 -5.12311 -1.32635 -0.14385 0.02370 0.24414 0.49647 0.75607 0.94693 1.19184 1.59942 1.62072 1.96670 2.04154 2.27740 2.32246 2.44286 2.74107 2.91036 2.97292 3.10463 3.40307 3.45502 3.50497 3.62035 3.64808 3.78884 3.81096 3.88627 3.89208 4.09231 4.11042 4.15335 4.17816 4.21577 4.23651 4.24499 4.29183 4.30601 4.32104 4.34287 4.43431 4.52829 4.61759 4.61858 4.65078 4.75022 4.75585 4.81822 4.85122 5.00957 5.04510 5.07536 5.14834 5.23298 5.40407 5.54341 5.60100 5.62914 6.07571 6.20999 6.52881 6.73945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.463 3.537 4 O -0.539 6.539 5 C -0.087 4.087 6 H 0.178 0.822 7 C -0.100 4.100 8 C -0.622 4.622 9 H 0.200 0.800 10 S 2.583 3.417 11 O -0.965 6.965 12 O -0.971 6.971 13 O -0.658 6.658 14 C 0.100 3.900 15 C -0.146 4.146 16 C -0.112 4.112 17 O -0.555 6.555 18 Si 0.807 3.193 19 C -0.052 4.052 20 C -0.172 4.172 21 C 0.156 3.844 22 O -0.310 6.310 23 C 0.093 3.907 24 C -0.111 4.111 25 C -0.105 4.105 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.136 4.136 29 C -0.105 4.105 30 C -0.170 4.170 31 C -0.098 4.098 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.397 0.603 39 H -0.271 1.271 40 H -0.299 1.299 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.169 0.831 51 H 0.142 0.858 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.819 -7.438 -5.918 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.429 6.429 5 C -0.106 4.106 6 H 0.195 0.805 7 C -0.138 4.138 8 C -0.732 4.732 9 H 0.217 0.783 10 S 2.684 3.316 11 O -0.964 6.964 12 O -0.970 6.970 13 O -0.617 6.617 14 C 0.058 3.942 15 C -0.150 4.150 16 C -0.219 4.219 17 O -0.363 6.363 18 Si 0.710 3.290 19 C -0.069 4.069 20 C -0.191 4.191 21 C 0.109 3.891 22 O -0.224 6.224 23 C 0.020 3.980 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.154 4.154 27 C -0.139 4.139 28 C -0.154 4.154 29 C -0.123 4.123 30 C -0.191 4.191 31 C -0.136 4.136 32 H 0.150 0.850 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.103 0.897 38 H 0.248 0.752 39 H -0.197 1.197 40 H -0.227 1.227 41 H 0.195 0.805 42 H 0.199 0.801 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.153 0.847 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.187 0.813 51 H 0.160 0.840 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.834 -5.848 -5.606 12.741 hybrid contribution -1.732 -0.358 -0.183 1.779 sum 8.101 -6.206 -5.788 11.732 Atomic orbital electron populations 1.23573 0.74931 1.05835 1.02470 1.86506 1.24809 1.32564 1.83327 1.24106 0.92713 0.81256 0.71171 1.90698 1.67960 1.37645 1.46577 1.22607 0.85877 1.00067 1.02072 0.80464 1.22776 0.93778 0.96282 1.01013 1.32095 1.09680 1.14878 1.16591 0.78259 1.05728 0.73745 0.76187 0.75954 1.93607 1.53199 1.86194 1.63358 1.93579 1.72562 1.49217 1.81605 1.85714 1.28680 1.84951 1.62316 1.17730 0.81680 0.97188 0.97558 1.20539 0.95994 0.96523 1.01904 1.25712 1.08905 1.04081 0.83224 1.86538 1.38499 1.87280 1.23989 0.94469 0.83522 0.73051 0.77969 1.21039 0.93107 0.98837 0.93903 1.21860 1.02119 0.93632 1.01535 1.18565 0.92277 0.87869 0.90339 1.86172 1.34874 1.41601 1.59761 1.21955 0.81967 0.97078 0.97021 1.19618 1.01790 0.95523 0.94155 1.21361 0.97891 0.92431 1.00630 1.21469 1.00456 0.99143 0.94368 1.21561 0.97728 0.98823 0.95749 1.21465 0.99562 0.93415 1.00982 1.21353 0.98218 0.99279 0.93460 1.20564 0.98212 0.99672 1.00662 1.22808 0.95106 0.99866 0.95794 0.84952 0.92332 0.91815 0.89702 0.84987 0.89669 0.75215 1.19749 1.22747 0.80503 0.80098 0.88522 0.88403 0.84488 0.84551 0.84690 0.84534 0.84464 0.81336 0.83975 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.05 10.57 -51.39 -0.54 -1.60 16 3 C 0.46 2.32 7.49 71.23 0.53 2.86 16 4 O -0.54 -6.77 15.65 21.94 0.34 -6.42 16 5 C -0.09 0.23 4.26 -11.02 -0.05 0.18 16 6 H 0.18 -1.85 8.14 -2.39 -0.02 -1.87 16 7 C -0.10 0.05 6.99 31.12 0.22 0.26 16 8 C -0.62 1.08 4.03 31.12 0.13 1.20 16 9 H 0.20 -1.83 6.12 -2.39 -0.01 -1.85 16 10 S 2.58 24.07 4.90 -56.49 -0.28 23.79 16 11 O -0.97 -17.21 17.27 -118.57 -2.05 -19.26 16 12 O -0.97 -12.39 14.21 -118.57 -1.69 -14.07 16 13 O -0.66 -5.56 9.47 -61.51 -0.58 -6.14 16 14 C 0.10 0.41 4.78 22.49 0.11 0.51 16 15 C -0.15 -0.42 4.68 -19.75 -0.09 -0.51 16 16 C -0.11 -0.77 2.23 71.24 0.16 -0.61 16 17 O -0.55 -3.63 12.88 -148.98 -1.92 -5.55 16 18 Si 0.81 0.43 29.91 68.60 2.05 2.48 16 19 C -0.05 0.28 8.65 22.24 0.19 0.47 16 20 C -0.17 1.39 9.03 22.38 0.20 1.59 16 21 C 0.16 -0.71 6.68 22.49 0.15 -0.56 16 22 O -0.31 1.47 10.12 -92.40 -0.93 0.54 16 23 C 0.09 -0.83 4.87 71.24 0.35 -0.48 16 24 C -0.11 0.50 5.51 -19.87 -0.11 0.40 16 25 C -0.11 0.41 9.70 22.27 0.22 0.63 16 26 C -0.14 0.44 10.05 22.27 0.22 0.66 16 27 C -0.12 0.36 10.05 22.27 0.22 0.59 16 28 C -0.14 0.46 10.05 22.27 0.22 0.68 16 29 C -0.11 0.43 9.70 22.27 0.22 0.65 16 30 C -0.17 0.33 8.45 22.46 0.19 0.52 16 31 C -0.10 0.25 7.19 31.12 0.22 0.47 16 32 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 34 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 35 H 0.08 0.41 7.39 -2.39 -0.02 0.39 16 36 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H 0.09 1.18 5.40 -2.39 -0.01 1.17 16 38 H 0.40 -1.86 8.70 -74.06 -0.64 -2.50 16 39 H -0.27 -1.11 7.11 99.48 0.71 -0.41 16 40 H -0.30 -2.52 7.11 99.48 0.71 -1.82 16 41 H 0.18 -2.16 5.12 -2.91 -0.01 -2.17 16 42 H 0.18 -2.77 6.29 -2.91 -0.02 -2.79 16 43 H 0.10 -1.22 7.60 -2.38 -0.02 -1.23 16 44 H 0.10 -1.24 7.60 -2.39 -0.02 -1.26 16 45 H 0.14 -0.98 8.06 -2.91 -0.02 -1.00 16 46 H 0.14 -0.85 8.06 -2.91 -0.02 -0.88 16 47 H 0.14 -0.81 8.06 -2.91 -0.02 -0.84 16 48 H 0.14 -0.88 8.06 -2.91 -0.02 -0.90 16 49 H 0.14 -1.02 8.06 -2.91 -0.02 -1.05 16 50 H 0.17 -1.15 7.26 -2.91 -0.02 -1.17 16 51 H 0.14 -1.35 8.14 -2.38 -0.02 -1.37 16 52 H 0.09 0.20 7.38 -2.39 -0.02 0.19 16 Total: 0.00 -37.77 442.13 -0.71 -38.48 By element: Atomic # 1 Polarization: -23.33 SS G_CDS: 0.38 Total: -22.95 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 4.50 Total: 10.69 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -7.37 Total: -52.50 kcal Atomic # 14 Polarization: 0.43 SS G_CDS: 2.05 Total: 2.48 kcal Atomic # 16 Polarization: 24.07 SS G_CDS: -0.28 Total: 23.79 kcal Total: -37.77 -0.71 -38.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8697352_13206342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.294 kcal (2) G-P(sol) polarization free energy of solvation -37.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds