Wall clock time and date at job start Mon Mar 8 2021 14:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34237 * 117.00175 * 2 1 4 4 O 1.20823 * 119.99392 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00310 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.84795 * 48.80175 * 5 3 2 7 7 C 1.53780 * 113.61565 * 180.02562 * 5 3 2 8 8 C 1.53773 * 87.08199 * 139.97733 * 7 5 3 9 9 H 1.09005 * 113.61436 * 89.19893 * 8 7 5 10 10 S 1.81397 * 113.61682 * 220.01610 * 8 7 5 11 11 O 1.42098 * 110.54187 * 62.87530 * 10 8 7 12 12 O 1.42098 * 110.54487 * 286.13063 * 10 8 7 13 13 O 1.52200 * 104.45367 * 174.50403 * 10 8 7 14 14 C 1.36011 * 113.99862 * 75.90479 * 13 10 8 15 15 C 1.39120 * 120.07568 * 267.00287 * 14 13 10 16 16 O 1.35996 * 120.06641 * 359.69944 * 15 14 13 17 17 C 1.42899 * 116.99419 * 179.97438 * 16 15 14 18 18 C 1.38584 * 119.86133 * 179.97438 * 15 14 13 19 19 C 1.38233 * 120.01606 * 0.02562 * 18 15 14 20 20 C 1.38251 * 120.15467 * 359.97438 * 19 18 15 21 21 C 1.50703 * 119.93309 * 179.97438 * 20 19 18 22 22 O 1.42897 * 109.47011 * 105.02426 * 21 20 19 23 23 Si 1.86301 * 109.47206 * 345.02469 * 21 20 19 24 24 C 1.38316 * 120.13488 * 0.02562 * 20 19 18 25 25 Br 1.89096 * 120.00614 * 180.02562 * 24 20 19 26 26 C 1.53783 * 87.08402 * 334.56671 * 8 7 5 27 27 H 1.09002 * 109.47061 * 299.99872 * 1 2 3 28 28 H 1.09002 * 109.47629 * 59.99867 * 1 2 3 29 29 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.09001 * 113.61378 * 25.42627 * 7 5 3 31 31 H 1.09004 * 113.68855 * 254.54120 * 7 5 3 32 32 H 1.08997 * 109.47315 * 60.01086 * 17 16 15 33 33 H 1.09001 * 109.46662 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47727 * 300.00612 * 17 16 15 35 35 H 1.08001 * 119.99092 * 179.97438 * 18 15 14 36 36 H 1.08007 * 119.92494 * 179.97438 * 19 18 15 37 37 H 1.09000 * 109.46992 * 225.02574 * 21 20 19 38 38 H 0.96697 * 114.00093 * 300.00097 * 22 21 20 39 39 H 1.48493 * 110.00103 * 179.97438 * 23 21 20 40 40 H 1.48496 * 110.00099 * 301.32229 * 23 21 20 41 41 H 1.08998 * 113.61102 * 139.97705 * 26 8 7 42 42 H 1.08994 * 113.61394 * 270.88313 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0233 0.6366 -0.7567 7 6 4.1077 2.7143 0.0001 8 6 5.1813 2.2263 0.9870 9 1 6.0815 1.8493 0.5016 10 16 5.5398 3.4095 2.3144 11 8 4.3873 3.6214 3.1181 12 8 6.2965 4.5041 1.8159 13 8 6.5057 2.6716 3.2304 14 6 7.7746 2.5918 2.7471 15 6 8.1694 1.4835 2.0047 16 8 7.2892 0.4747 1.7657 17 6 7.7638 -0.6315 0.9956 18 6 9.4632 1.4069 1.5140 19 6 10.3588 2.4301 1.7628 20 6 9.9672 3.5318 2.5006 21 6 10.9478 4.6441 2.7694 22 8 10.6348 5.7656 1.9410 23 14 12.6742 4.0550 2.3907 24 6 8.6774 3.6147 2.9933 25 35 8.1454 5.1235 4.0013 26 6 4.1916 1.1227 1.3961 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.4174 3.4402 0.4297 31 1 4.5105 3.0311 -0.9619 32 1 8.6079 -1.0944 1.5066 33 1 6.9639 -1.3627 0.8789 34 1 8.0814 -0.2810 0.0135 35 1 9.7721 0.5473 0.9377 36 1 11.3669 2.3687 1.3800 37 1 10.8858 4.9377 3.8172 38 1 10.6703 5.5766 0.9933 39 1 13.6507 5.1429 2.6511 40 1 13.0002 2.8692 3.2229 41 1 4.6621 0.1534 1.5605 42 1 3.5243 1.4135 2.2073 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8767666_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:00 Heat of formation + Delta-G solvation = -166.629984 kcal Electronic energy + Delta-G solvation = -34284.026490 eV Core-core repulsion = 29373.269114 eV Total energy + Delta-G solvation = -4910.757376 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.005 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.72576 -41.87256 -40.49346 -39.66885 -39.46721 -38.17557 -37.31393 -37.23504 -37.07327 -33.47370 -32.21773 -30.63725 -29.89875 -28.95108 -27.74904 -27.20120 -26.56817 -24.89307 -23.58543 -22.88820 -21.63095 -20.82032 -19.82730 -19.73672 -19.04319 -18.68923 -18.55846 -18.08393 -17.87166 -17.46149 -17.27870 -16.94845 -16.68947 -16.43015 -16.17691 -15.91064 -15.55537 -15.49393 -14.81340 -14.73789 -14.51487 -14.45609 -14.15715 -13.94792 -13.87556 -13.82076 -13.51870 -13.43699 -13.36536 -13.18554 -13.10217 -13.05096 -12.83434 -12.75554 -12.64032 -12.35154 -12.05711 -11.98475 -11.80257 -11.72951 -11.62075 -11.25664 -11.13899 -10.56397 -10.10900 -9.73364 -5.19920 -1.13586 -0.44402 -0.32647 0.31176 0.91528 1.10377 1.13990 1.51062 1.63609 1.64981 1.87055 1.88322 2.51180 2.65813 2.85746 2.99672 3.13257 3.16857 3.28605 3.33619 3.47896 3.49255 3.64417 3.66472 3.81531 3.84590 3.84753 4.06347 4.15999 4.20066 4.24309 4.24362 4.28942 4.33918 4.39456 4.41505 4.48163 4.57017 4.60307 4.61532 4.76392 4.85163 4.90143 5.34650 5.68748 6.53669 6.68597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.136 0.864 7 C -0.089 4.089 8 C -0.641 4.641 9 H 0.160 0.840 10 S 2.584 3.416 11 O -0.914 6.914 12 O -0.933 6.933 13 O -0.643 6.643 14 C 0.058 3.942 15 C 0.138 3.862 16 O -0.304 6.304 17 C 0.016 3.984 18 C -0.177 4.177 19 C -0.049 4.049 20 C -0.118 4.118 21 C -0.074 4.074 22 O -0.522 6.522 23 Si 0.688 3.312 24 C -0.011 4.011 25 Br 0.013 6.987 26 C -0.086 4.086 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.122 0.878 38 H 0.379 0.621 39 H -0.247 1.247 40 H -0.252 1.252 41 H 0.106 0.894 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 -8.868 -6.834 12.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.308 3.692 4 O -0.385 6.385 5 C -0.114 4.114 6 H 0.154 0.846 7 C -0.127 4.127 8 C -0.747 4.747 9 H 0.178 0.822 10 S 2.679 3.321 11 O -0.912 6.912 12 O -0.931 6.931 13 O -0.601 6.601 14 C 0.012 3.988 15 C 0.089 3.911 16 O -0.217 6.217 17 C -0.078 4.078 18 C -0.196 4.196 19 C -0.068 4.068 20 C -0.120 4.120 21 C -0.184 4.184 22 O -0.327 6.327 23 Si 0.588 3.412 24 C -0.094 4.094 25 Br 0.100 6.900 26 C -0.124 4.124 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.139 0.861 38 H 0.226 0.774 39 H -0.172 1.172 40 H -0.177 1.177 41 H 0.125 0.875 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.478 -7.361 -4.890 10.397 hybrid contribution -0.688 -0.931 -0.304 1.197 sum 4.790 -8.292 -5.194 10.894 Atomic orbital electron populations 1.23354 0.75748 1.04083 1.02904 1.86498 1.23881 1.33067 1.83817 1.23494 0.91546 0.81645 0.72465 1.90711 1.66832 1.36392 1.44542 1.22420 0.87734 1.00068 1.01220 0.84608 1.22648 0.94205 0.95947 0.99933 1.32176 1.07951 1.16101 1.18507 0.82219 1.06046 0.74891 0.75447 0.75720 1.93668 1.49159 1.83530 1.64831 1.93725 1.67747 1.50022 1.81631 1.85773 1.26865 1.84376 1.63101 1.16807 0.82064 0.95700 1.04199 1.18895 0.90195 0.87623 0.94425 1.86205 1.37382 1.28424 1.69663 1.23362 1.02747 0.86870 0.94841 1.21277 0.91495 1.02076 1.04714 1.21017 0.99579 0.91437 0.94742 1.20248 0.93552 0.98135 1.00101 1.25245 1.06148 0.87897 0.99125 1.86627 1.92986 1.32418 1.20667 0.95148 0.74562 0.80695 0.90750 1.21842 0.94692 0.93413 0.99424 1.96890 1.90822 1.34996 1.67304 1.22573 0.95091 0.98825 0.95892 0.91570 0.91647 0.87759 0.87327 0.87761 0.91444 0.86946 0.91533 0.82508 0.83042 0.86107 0.77405 1.17152 1.17676 0.87507 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.41 10.57 -39.28 -0.41 -0.82 16 3 C 0.47 0.93 7.48 36.00 0.27 1.20 16 4 O -0.50 -2.59 15.65 -18.75 -0.29 -2.88 16 5 C -0.09 0.11 4.26 -90.96 -0.39 -0.28 16 6 H 0.14 -0.57 8.14 -51.93 -0.42 -1.00 16 7 C -0.09 0.03 6.99 -25.92 -0.18 -0.15 16 8 C -0.64 0.33 3.23 -25.92 -0.08 0.25 16 9 H 0.16 -0.50 6.04 -51.93 -0.31 -0.82 16 10 S 2.58 10.08 4.97 -107.50 -0.53 9.54 16 11 O -0.91 -6.57 17.42 -67.04 -1.17 -7.74 16 12 O -0.93 -4.89 14.49 -67.04 -0.97 -5.86 16 13 O -0.64 -2.40 9.23 -54.27 -0.50 -2.90 16 14 C 0.06 0.13 4.84 -39.11 -0.19 -0.06 16 15 C 0.14 -0.16 5.92 -39.13 -0.23 -0.39 16 16 O -0.30 0.83 7.53 -34.25 -0.26 0.57 16 17 C 0.02 -0.11 9.81 101.05 0.99 0.89 16 18 C -0.18 0.68 9.04 -39.46 -0.36 0.32 16 19 C -0.05 0.17 8.65 -39.58 -0.34 -0.17 16 20 C -0.12 0.04 5.26 -104.59 -0.55 -0.51 16 21 C -0.07 0.04 2.02 36.01 0.07 0.12 16 22 O -0.52 0.00 12.69 -35.23 -0.45 -0.45 16 23 Si 0.69 -1.87 29.91 -169.99 -5.08 -6.95 16 24 C -0.01 -0.03 5.51 -39.40 -0.22 -0.25 16 25 Br 0.01 0.06 29.52 -68.01 -2.01 -1.95 16 26 C -0.09 0.08 7.10 -25.92 -0.18 -0.10 16 27 H 0.07 -0.01 8.13 -51.93 -0.42 -0.44 16 28 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 29 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 30 H 0.11 0.15 7.39 -51.93 -0.38 -0.24 16 31 H 0.10 -0.27 8.14 -51.93 -0.42 -0.70 16 32 H 0.07 -0.49 7.65 -51.93 -0.40 -0.88 16 33 H 0.11 -0.88 8.14 -51.93 -0.42 -1.30 16 34 H 0.07 -0.54 7.67 -51.93 -0.40 -0.94 16 35 H 0.16 -1.15 6.30 -52.49 -0.33 -1.48 16 36 H 0.15 -1.04 5.11 -52.48 -0.27 -1.31 16 37 H 0.12 0.07 7.22 -51.93 -0.37 -0.30 16 38 H 0.38 -1.62 8.70 45.56 0.40 -1.23 16 39 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 40 H -0.25 0.17 7.11 56.52 0.40 0.57 16 41 H 0.11 -0.35 7.87 -51.93 -0.41 -0.76 16 42 H 0.11 0.06 7.49 -51.93 -0.39 -0.33 16 LS Contribution 377.15 15.07 5.68 5.68 Total: 0.00 -13.09 377.15 -10.92 -24.01 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: -4.60 Total: -12.16 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.32 Total: 1.90 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -4.05 Total: -20.08 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: -5.08 Total: -6.95 kcal Atomic # 16 Polarization: 10.08 SS G_CDS: -0.53 Total: 9.54 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -2.01 Total: -1.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -13.09 -10.92 -24.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8767666_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.619 kcal (2) G-P(sol) polarization free energy of solvation -13.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds