Wall clock time and date at job start Mon Mar 8 2021 14:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34237 * 117.00175 * 2 1 4 4 O 1.20823 * 119.99392 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00310 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.84795 * 48.80175 * 5 3 2 7 7 C 1.53780 * 113.61565 * 180.02562 * 5 3 2 8 8 C 1.53773 * 87.08199 * 139.97733 * 7 5 3 9 9 H 1.09005 * 113.61436 * 89.19893 * 8 7 5 10 10 S 1.81397 * 113.61682 * 220.01610 * 8 7 5 11 11 O 1.42098 * 110.54187 * 62.87530 * 10 8 7 12 12 O 1.42098 * 110.54487 * 286.13063 * 10 8 7 13 13 O 1.52200 * 104.45367 * 174.50403 * 10 8 7 14 14 C 1.36011 * 113.99862 * 75.90479 * 13 10 8 15 15 C 1.39120 * 120.07568 * 267.00287 * 14 13 10 16 16 O 1.35996 * 120.06641 * 359.69944 * 15 14 13 17 17 C 1.42899 * 116.99419 * 179.97438 * 16 15 14 18 18 C 1.38584 * 119.86133 * 179.97438 * 15 14 13 19 19 C 1.38233 * 120.01606 * 0.02562 * 18 15 14 20 20 C 1.38251 * 120.15467 * 359.97438 * 19 18 15 21 21 C 1.50703 * 119.93309 * 179.97438 * 20 19 18 22 22 O 1.42897 * 109.47011 * 105.02426 * 21 20 19 23 23 Si 1.86301 * 109.47206 * 345.02469 * 21 20 19 24 24 C 1.38316 * 120.13488 * 0.02562 * 20 19 18 25 25 Br 1.89096 * 120.00614 * 180.02562 * 24 20 19 26 26 C 1.53783 * 87.08402 * 334.56671 * 8 7 5 27 27 H 1.09002 * 109.47061 * 299.99872 * 1 2 3 28 28 H 1.09002 * 109.47629 * 59.99867 * 1 2 3 29 29 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.09001 * 113.61378 * 25.42627 * 7 5 3 31 31 H 1.09004 * 113.68855 * 254.54120 * 7 5 3 32 32 H 1.08997 * 109.47315 * 60.01086 * 17 16 15 33 33 H 1.09001 * 109.46662 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.47727 * 300.00612 * 17 16 15 35 35 H 1.08001 * 119.99092 * 179.97438 * 18 15 14 36 36 H 1.08007 * 119.92494 * 179.97438 * 19 18 15 37 37 H 1.09000 * 109.46992 * 225.02574 * 21 20 19 38 38 H 0.96697 * 114.00093 * 300.00097 * 22 21 20 39 39 H 1.48493 * 110.00103 * 179.97438 * 23 21 20 40 40 H 1.48496 * 110.00099 * 301.32229 * 23 21 20 41 41 H 1.08998 * 113.61102 * 139.97705 * 26 8 7 42 42 H 1.08994 * 113.61394 * 270.88313 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0233 0.6366 -0.7567 7 6 4.1077 2.7143 0.0001 8 6 5.1813 2.2263 0.9870 9 1 6.0815 1.8493 0.5016 10 16 5.5398 3.4095 2.3144 11 8 4.3873 3.6214 3.1181 12 8 6.2965 4.5041 1.8159 13 8 6.5057 2.6716 3.2304 14 6 7.7746 2.5918 2.7471 15 6 8.1694 1.4835 2.0047 16 8 7.2892 0.4747 1.7657 17 6 7.7638 -0.6315 0.9956 18 6 9.4632 1.4069 1.5140 19 6 10.3588 2.4301 1.7628 20 6 9.9672 3.5318 2.5006 21 6 10.9478 4.6441 2.7694 22 8 10.6348 5.7656 1.9410 23 14 12.6742 4.0550 2.3907 24 6 8.6774 3.6147 2.9933 25 35 8.1454 5.1235 4.0013 26 6 4.1916 1.1227 1.3961 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.4174 3.4402 0.4297 31 1 4.5105 3.0311 -0.9619 32 1 8.6079 -1.0944 1.5066 33 1 6.9639 -1.3627 0.8789 34 1 8.0814 -0.2810 0.0135 35 1 9.7721 0.5473 0.9377 36 1 11.3669 2.3687 1.3800 37 1 10.8858 4.9377 3.8172 38 1 10.6703 5.5766 0.9933 39 1 13.6507 5.1429 2.6511 40 1 13.0002 2.8692 3.2229 41 1 4.6621 0.1534 1.5605 42 1 3.5243 1.4135 2.2073 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8767666_13206342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:07:59 Heat of formation + Delta-G solvation = -172.383985 kcal Electronic energy + Delta-G solvation = -34284.276002 eV Core-core repulsion = 29373.269114 eV Total energy + Delta-G solvation = -4911.006888 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.005 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66735 -41.95987 -40.39450 -39.63132 -39.33333 -38.47928 -37.47772 -37.37977 -37.12930 -33.44431 -32.07168 -30.58864 -29.91680 -28.52115 -27.71965 -27.14381 -26.37318 -24.86023 -23.62297 -22.76288 -21.67904 -20.79772 -19.89542 -19.67803 -19.03768 -18.66307 -18.57510 -18.16221 -17.80421 -17.52122 -17.15799 -16.77161 -16.67649 -16.32670 -16.03180 -15.95585 -15.46764 -15.33010 -14.78378 -14.59717 -14.52550 -14.48084 -14.19433 -13.95323 -13.80365 -13.79654 -13.60119 -13.53487 -13.37681 -13.32603 -13.16584 -13.04241 -12.77319 -12.44850 -12.40140 -12.30825 -11.94957 -11.90115 -11.87417 -11.65471 -11.64839 -11.39435 -11.29900 -10.46082 -10.10261 -9.56121 -5.00634 -1.24426 -0.35035 -0.22133 0.25833 0.82876 1.00757 1.27176 1.64930 1.69926 1.92267 2.04920 2.07760 2.40389 2.58803 2.82777 2.97548 3.18697 3.34524 3.48004 3.52880 3.58667 3.68778 3.76800 3.86323 3.90143 4.22055 4.25522 4.27302 4.30692 4.30947 4.39946 4.44988 4.50932 4.54975 4.60711 4.63509 4.68189 4.72315 4.78925 4.89148 4.92459 5.00016 5.18278 5.28214 6.03220 6.58272 6.84100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.462 3.538 4 O -0.541 6.541 5 C -0.082 4.082 6 H 0.183 0.817 7 C -0.103 4.103 8 C -0.608 4.608 9 H 0.197 0.803 10 S 2.567 3.433 11 O -0.970 6.970 12 O -0.960 6.960 13 O -0.654 6.654 14 C 0.019 3.981 15 C 0.145 3.855 16 O -0.314 6.314 17 C -0.002 4.002 18 C -0.157 4.157 19 C -0.035 4.035 20 C -0.126 4.126 21 C -0.098 4.098 22 O -0.546 6.546 23 Si 0.812 3.188 24 C -0.038 4.038 25 Br -0.035 7.035 26 C -0.090 4.090 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.206 0.794 36 H 0.194 0.806 37 H 0.096 0.904 38 H 0.396 0.604 39 H -0.302 1.302 40 H -0.270 1.270 41 H 0.140 0.860 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -13.011 -10.072 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.101 4.101 6 H 0.200 0.800 7 C -0.142 4.142 8 C -0.718 4.718 9 H 0.214 0.786 10 S 2.668 3.332 11 O -0.968 6.968 12 O -0.958 6.958 13 O -0.613 6.613 14 C -0.026 4.026 15 C 0.095 3.905 16 O -0.228 6.228 17 C -0.095 4.095 18 C -0.176 4.176 19 C -0.054 4.054 20 C -0.129 4.129 21 C -0.205 4.205 22 O -0.353 6.353 23 Si 0.714 3.286 24 C -0.121 4.121 25 Br 0.052 6.948 26 C -0.129 4.129 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.099 0.901 31 H 0.152 0.848 32 H 0.097 0.903 33 H 0.146 0.854 34 H 0.111 0.889 35 H 0.222 0.778 36 H 0.210 0.790 37 H 0.114 0.886 38 H 0.246 0.754 39 H -0.230 1.230 40 H -0.196 1.196 41 H 0.158 0.842 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.796 -11.496 -8.107 16.083 hybrid contribution -1.406 0.245 0.658 1.571 sum 6.390 -11.251 -7.450 14.930 Atomic orbital electron populations 1.23561 0.75077 1.05808 1.02381 1.86499 1.24668 1.32558 1.83374 1.24190 0.92841 0.81223 0.71128 1.90700 1.68013 1.37751 1.46581 1.22612 0.85573 0.99916 1.02016 0.80008 1.22809 0.93941 0.96389 1.01018 1.31978 1.09422 1.14372 1.16059 0.78568 1.06299 0.74004 0.76435 0.76453 1.93588 1.51092 1.85025 1.67118 1.93676 1.67872 1.52259 1.81987 1.85738 1.27893 1.84039 1.63601 1.17255 0.81227 0.97470 1.06599 1.18977 0.91335 0.86885 0.93329 1.86209 1.37669 1.28772 1.70108 1.23814 1.04031 0.85934 0.95679 1.21849 0.89716 1.02846 1.03161 1.21478 1.01397 0.89790 0.92721 1.20440 0.92359 0.99397 1.00717 1.25690 1.08702 0.87946 0.98148 1.86586 1.93293 1.33280 1.22182 0.93928 0.69234 0.77015 0.88392 1.21983 0.96427 0.92642 1.01023 1.96810 1.91402 1.37768 1.68856 1.22693 0.94680 0.99995 0.95501 0.92541 0.91843 0.84898 0.90138 0.84842 0.90333 0.85449 0.88905 0.77750 0.78987 0.88617 0.75441 1.23032 1.19611 0.84166 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.59 10.57 -51.49 -0.54 -1.13 16 3 C 0.46 1.88 7.48 71.23 0.53 2.41 16 4 O -0.54 -6.59 15.65 21.97 0.34 -6.25 16 5 C -0.08 0.33 4.26 -11.01 -0.05 0.28 16 6 H 0.18 -2.40 8.14 -2.39 -0.02 -2.42 16 7 C -0.10 0.10 6.99 31.12 0.22 0.32 16 8 C -0.61 0.99 3.23 31.12 0.10 1.09 16 9 H 0.20 -1.84 6.04 -2.38 -0.01 -1.85 16 10 S 2.57 27.02 4.97 -56.49 -0.28 26.74 16 11 O -0.97 -18.60 17.42 -118.57 -2.07 -20.67 16 12 O -0.96 -13.19 14.49 -118.57 -1.72 -14.91 16 13 O -0.65 -6.46 9.23 -60.69 -0.56 -7.02 16 14 C 0.02 0.10 4.84 22.58 0.11 0.21 16 15 C 0.14 -0.68 5.92 22.56 0.13 -0.55 16 16 O -0.31 2.77 7.53 -79.62 -0.60 2.17 16 17 C 0.00 0.03 9.81 113.37 1.11 1.14 16 18 C -0.16 1.90 9.04 22.35 0.20 2.10 16 19 C -0.04 0.36 8.65 22.27 0.19 0.55 16 20 C -0.13 0.11 5.26 -19.84 -0.10 0.00 16 21 C -0.10 0.03 2.02 71.24 0.14 0.18 16 22 O -0.55 -0.75 12.69 -148.98 -1.89 -2.64 16 23 Si 0.81 -5.45 29.91 68.60 2.05 -3.39 16 24 C -0.04 -0.26 5.51 22.38 0.12 -0.14 16 25 Br -0.04 -0.48 29.52 -20.37 -0.60 -1.08 16 26 C -0.09 0.24 7.10 31.12 0.22 0.47 16 27 H 0.06 0.05 8.13 -2.39 -0.02 0.03 16 28 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 29 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 30 H 0.08 0.43 7.39 -2.39 -0.02 0.41 16 31 H 0.13 -0.94 8.14 -2.38 -0.02 -0.96 16 32 H 0.08 -1.55 7.65 -2.39 -0.02 -1.57 16 33 H 0.13 -2.64 8.14 -2.39 -0.02 -2.66 16 34 H 0.09 -2.12 7.67 -2.39 -0.02 -2.14 16 35 H 0.21 -4.45 6.30 -2.91 -0.02 -4.47 16 36 H 0.19 -3.63 5.11 -2.91 -0.01 -3.64 16 37 H 0.10 0.38 7.22 -2.39 -0.02 0.36 16 38 H 0.40 -3.29 8.70 -74.06 -0.64 -3.93 16 39 H -0.30 -0.70 7.11 99.48 0.71 0.01 16 40 H -0.27 1.00 7.11 99.48 0.71 1.71 16 41 H 0.14 -1.34 7.87 -2.39 -0.02 -1.35 16 42 H 0.08 0.24 7.49 -2.39 -0.02 0.22 16 Total: 0.00 -41.02 377.15 -1.23 -42.25 By element: Atomic # 1 Polarization: -23.80 SS G_CDS: 0.50 Total: -23.30 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.13 Total: 9.23 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -7.03 Total: -50.45 kcal Atomic # 14 Polarization: -5.45 SS G_CDS: 2.05 Total: -3.39 kcal Atomic # 16 Polarization: 27.02 SS G_CDS: -0.28 Total: 26.74 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.60 Total: -1.08 kcal Total: -41.02 -1.23 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8767666_13206342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.131 kcal (2) G-P(sol) polarization free energy of solvation -41.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds