Wall clock time and date at job start Mon Mar 8 2021 12:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99970 * 2 1 4 4 C 1.38546 * 120.06730 * 359.97438 * 3 2 1 5 5 C 1.38283 * 120.01449 * 179.97438 * 4 3 2 6 6 C 1.38211 * 120.14770 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.92494 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47178 * 105.00076 * 7 6 5 9 9 Si 1.86300 * 109.47152 * 344.99998 * 7 6 5 10 10 H 1.48498 * 109.47280 * 60.00265 * 9 7 6 11 11 H 1.48498 * 109.46944 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46984 * 299.99984 * 9 7 6 13 13 C 1.38352 * 120.13946 * 0.02562 * 6 5 4 14 14 Br 1.89108 * 120.00633 * 179.97438 * 13 6 5 15 15 C 1.38602 * 119.98354 * 359.65585 * 13 6 5 16 16 O 1.36016 * 120.07345 * 180.32430 * 15 13 6 17 17 S 1.52198 * 113.99608 * 270.29373 * 16 15 13 18 18 O 1.42101 * 104.27461 * 191.07639 * 17 16 15 19 19 O 1.42102 * 104.27810 * 318.93074 * 17 16 15 20 20 C 1.81400 * 104.44960 * 75.00317 * 17 16 15 21 21 C 1.53000 * 109.46854 * 179.97438 * 20 17 16 22 22 C 1.52996 * 109.46926 * 179.97438 * 21 20 17 23 23 Si 1.86299 * 109.47241 * 180.02562 * 22 21 20 24 24 C 1.86302 * 109.47228 * 60.00522 * 23 22 21 25 25 C 1.86301 * 109.47325 * 180.02562 * 23 22 21 26 26 C 1.86297 * 109.47194 * 300.00340 * 23 22 21 27 27 H 1.09002 * 109.47382 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00137 * 1 2 3 30 30 H 1.07995 * 119.99442 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.92410 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46802 * 224.99987 * 7 6 5 33 33 H 0.96700 * 114.00081 * 299.99713 * 8 7 6 34 34 H 1.08990 * 109.47016 * 299.99573 * 20 17 16 35 35 H 1.08997 * 109.46808 * 60.00240 * 20 17 16 36 36 H 1.09001 * 109.47765 * 300.00345 * 21 20 17 37 37 H 1.09000 * 109.47138 * 60.00729 * 21 20 17 38 38 H 1.08996 * 109.47608 * 300.00422 * 22 21 20 39 39 H 1.08999 * 109.47059 * 60.00909 * 22 21 20 40 40 H 1.09001 * 109.46915 * 59.99759 * 24 23 22 41 41 H 1.08990 * 109.47283 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.46584 * 300.00147 * 24 23 22 43 43 H 1.09001 * 109.47035 * 59.99968 * 25 23 22 44 44 H 1.09001 * 109.47379 * 179.97438 * 25 23 22 45 45 H 1.09001 * 109.47179 * 300.00461 * 25 23 22 46 46 H 1.09003 * 109.47425 * 59.99978 * 26 23 22 47 47 H 1.09003 * 109.46907 * 179.97438 * 26 23 22 48 48 H 1.08999 * 109.47344 * 299.99529 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3745 -0.0005 5 6 1.9221 3.6061 0.0000 6 6 3.3022 3.6807 0.0005 7 6 3.9824 5.0256 0.0005 8 8 4.5081 5.2935 1.3020 9 14 2.7489 6.3454 -0.4548 10 1 1.6417 6.3508 0.5347 11 1 3.4194 7.6704 -0.4554 12 1 2.2027 6.0669 -1.8073 13 6 4.0605 2.5235 0.0000 14 35 5.9486 2.6300 0.0000 15 6 3.4360 1.2862 0.0061 16 8 4.1797 0.1473 0.0123 17 16 4.5246 -0.3742 -1.3753 18 8 5.0550 -1.6714 -1.1403 19 8 3.3299 -0.1958 -2.1237 20 6 5.8216 0.7458 -1.9703 21 6 6.2585 0.3203 -3.3735 22 6 7.3520 1.2652 -3.8756 23 14 7.8835 0.7477 -5.5845 24 6 6.4223 0.8205 -6.7380 25 6 9.2156 1.8979 -6.1956 26 6 8.5445 -0.9931 -5.5287 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 0.2147 2.3192 -0.0005 31 1 1.3335 4.5116 0.0000 32 1 4.7952 5.0216 -0.7258 33 1 3.8392 5.3121 2.0002 34 1 5.4353 1.7643 -2.0029 35 1 6.6764 0.7027 -1.2954 36 1 6.6450 -0.6984 -3.3406 37 1 5.4039 0.3630 -4.0487 38 1 6.9652 2.2837 -3.9086 39 1 8.2068 1.2229 -3.2006 40 1 6.0356 1.8391 -6.7706 41 1 6.7332 0.5173 -7.7377 42 1 5.6432 0.1473 -6.3803 43 1 10.0704 1.8549 -5.5206 44 1 9.5269 1.5948 -7.1953 45 1 8.8293 2.9166 -6.2281 46 1 7.7654 -1.6664 -5.1711 47 1 8.8551 -1.2960 -6.5287 48 1 9.3995 -1.0357 -4.8540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8767666_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:44:10 Heat of formation + Delta-G solvation = -169.881657 kcal Electronic energy + Delta-G solvation = -32476.237242 eV Core-core repulsion = 28023.411187 eV Total energy + Delta-G solvation = -4452.826055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 440.037 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.66728 -40.36918 -39.55283 -38.13260 -37.32215 -37.02021 -36.02099 -33.67753 -32.19495 -30.83307 -29.70734 -28.83127 -28.48847 -28.41698 -28.29371 -26.56106 -24.92024 -23.12632 -23.03718 -21.42450 -19.79342 -19.22009 -18.96997 -18.68797 -18.09514 -17.46220 -16.93996 -16.86805 -16.47293 -16.21757 -16.06759 -15.62383 -15.46712 -15.13265 -15.08067 -14.53791 -14.41864 -14.25770 -14.16084 -14.07369 -13.87031 -13.75074 -13.62669 -13.45105 -13.31270 -13.28370 -13.17820 -13.12521 -13.10533 -13.08743 -12.99945 -12.72892 -12.60736 -12.47981 -12.37942 -12.06338 -11.98810 -11.83122 -11.55131 -11.01156 -10.82929 -10.80209 -10.66990 -10.53385 -10.16634 -9.62504 -1.10739 -0.48436 -0.24949 0.02884 0.86032 1.04361 1.20675 1.33773 1.73167 1.74069 1.84706 1.85774 1.85958 1.89888 2.57313 2.66868 2.93400 3.12897 3.23341 3.31785 3.43355 3.55919 3.63763 3.64546 3.73270 3.97415 4.05994 4.07390 4.17526 4.25769 4.38308 4.43370 4.47371 4.59044 4.65138 4.69752 4.70896 4.72451 4.75174 4.75830 4.76364 4.77839 4.80241 4.93925 4.96723 5.30204 5.46597 5.54398 5.56854 5.90236 6.37387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.293 6.293 3 C 0.176 3.824 4 C -0.174 4.174 5 C -0.062 4.062 6 C -0.117 4.117 7 C -0.086 4.086 8 O -0.524 6.524 9 Si 0.947 3.053 10 H -0.247 1.247 11 H -0.244 1.244 12 H -0.243 1.243 13 C -0.052 4.052 14 Br 0.006 6.994 15 C 0.060 3.940 16 O -0.645 6.645 17 S 2.576 3.424 18 O -0.920 6.920 19 O -0.942 6.942 20 C -0.656 4.656 21 C -0.099 4.099 22 C -0.404 4.404 23 Si 1.000 3.000 24 C -0.452 4.452 25 C -0.448 4.448 26 C -0.453 4.453 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.377 0.623 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 5.542 -0.630 6.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.204 6.204 3 C 0.126 3.874 4 C -0.193 4.193 5 C -0.081 4.081 6 C -0.120 4.120 7 C -0.196 4.196 8 O -0.328 6.328 9 Si 0.768 3.232 10 H -0.171 1.171 11 H -0.168 1.168 12 H -0.166 1.166 13 C -0.134 4.134 14 Br 0.093 6.907 15 C 0.015 3.985 16 O -0.603 6.603 17 S 2.672 3.328 18 O -0.919 6.919 19 O -0.941 6.941 20 C -0.783 4.783 21 C -0.137 4.137 22 C -0.490 4.490 23 Si 1.197 2.803 24 C -0.560 4.560 25 C -0.556 4.556 26 C -0.561 4.561 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.174 0.826 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.224 0.776 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.298 5.368 -0.945 6.371 hybrid contribution -0.248 -0.109 0.423 0.503 sum -3.546 5.259 -0.522 6.364 Atomic orbital electron populations 1.23343 0.76536 1.05531 1.02036 1.86222 1.22835 1.24767 1.86585 1.18861 0.89726 0.86373 0.92479 1.21349 1.01445 0.90699 1.05770 1.21168 0.93139 0.98501 0.95340 1.20084 0.93348 0.94903 1.03647 1.25139 1.06930 0.97048 0.90530 1.86611 1.37369 1.93381 1.15481 0.85728 0.77275 0.78598 0.81611 1.17052 1.16766 1.16615 1.21810 0.92962 0.92993 1.05637 1.96842 0.98834 1.98636 1.96393 1.16749 0.86583 0.81537 1.13673 1.85790 1.71526 1.45133 1.57851 1.06197 0.76660 0.76410 0.73541 1.93650 1.81239 1.34761 1.82211 1.93643 1.42678 1.86355 1.71410 1.31707 1.19691 1.17663 1.09274 1.20976 1.00452 1.00745 0.91554 1.26151 1.01863 1.03228 1.17739 0.79360 0.67290 0.67345 0.66329 1.26163 1.14475 1.04567 1.10765 1.26097 1.12696 1.10575 1.06223 1.26175 1.06662 1.18661 1.04573 0.91756 0.87031 0.91470 0.82575 0.83452 0.85703 0.77603 0.84305 0.83986 0.90026 0.90026 0.89948 0.90043 0.91166 0.91162 0.91111 0.91265 0.91197 0.91255 0.91088 0.91163 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.29 -0.79 9.73 -41.50 -0.40 -1.19 16 3 C 0.18 0.36 5.93 -39.13 -0.23 0.12 16 4 C -0.17 0.24 9.04 -39.45 -0.36 -0.12 16 5 C -0.06 0.14 8.65 -39.57 -0.34 -0.21 16 6 C -0.12 0.10 5.26 -104.59 -0.55 -0.45 16 7 C -0.09 0.18 2.02 36.01 0.07 0.25 16 8 O -0.52 0.83 12.70 -35.23 -0.45 0.38 16 9 Si 0.95 -2.73 25.49 -169.99 -4.33 -7.06 16 10 H -0.25 0.89 6.73 56.52 0.38 1.27 16 11 H -0.24 0.30 7.11 56.52 0.40 0.71 16 12 H -0.24 0.58 7.11 56.52 0.40 0.99 16 13 C -0.05 -0.06 5.55 -39.41 -0.22 -0.28 16 14 Br 0.01 0.00 25.75 -68.01 -1.75 -1.75 16 15 C 0.06 0.18 4.81 -39.11 -0.19 -0.01 16 16 O -0.65 -2.83 9.29 -54.29 -0.50 -3.34 16 17 S 2.58 11.00 5.17 -107.50 -0.56 10.44 16 18 O -0.92 -6.75 18.09 -67.04 -1.21 -7.96 16 19 O -0.94 -5.21 15.82 -68.53 -1.08 -6.29 16 20 C -0.66 -0.46 3.82 37.16 0.14 -0.32 16 21 C -0.10 0.03 4.59 -26.73 -0.12 -0.09 16 22 C -0.40 0.71 4.45 37.16 0.17 0.88 16 23 Si 1.00 -2.44 12.19 -169.99 -2.07 -4.51 16 24 C -0.45 0.58 8.65 101.05 0.87 1.45 16 25 C -0.45 0.66 8.65 101.05 0.87 1.53 16 26 C -0.45 0.45 8.65 101.05 0.87 1.32 16 27 H 0.06 -0.27 7.66 -51.93 -0.40 -0.67 16 28 H 0.11 -0.35 8.14 -51.93 -0.42 -0.78 16 29 H 0.07 -0.23 7.66 -51.93 -0.40 -0.63 16 30 H 0.16 -0.70 6.30 -52.49 -0.33 -1.03 16 31 H 0.15 -0.69 4.87 -52.49 -0.26 -0.94 16 32 H 0.13 -0.30 7.22 -51.93 -0.37 -0.67 16 33 H 0.38 -1.86 8.70 45.56 0.40 -1.47 16 34 H 0.14 -0.09 5.33 -51.93 -0.28 -0.36 16 35 H 0.14 -0.06 6.77 -51.93 -0.35 -0.41 16 36 H 0.08 -0.08 7.79 -51.93 -0.40 -0.48 16 37 H 0.08 -0.11 7.79 -51.93 -0.40 -0.51 16 38 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 39 H 0.08 -0.17 7.96 -51.93 -0.41 -0.59 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 42 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 44 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 45 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 46 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 47 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 48 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 LS Contribution 410.53 15.07 6.19 6.19 Total: 0.00 -9.93 410.53 -10.76 -20.69 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: -6.57 Total: -10.64 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 1.98 Total: 5.03 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -3.65 Total: -18.39 kcal Atomic # 14 Polarization: -5.17 SS G_CDS: -6.40 Total: -11.58 kcal Atomic # 16 Polarization: 11.00 SS G_CDS: -0.56 Total: 10.44 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -1.75 Total: -1.75 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -9.93 -10.76 -20.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8767666_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.191 kcal (2) G-P(sol) polarization free energy of solvation -9.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds