Wall clock time and date at job start Mon Mar 8 2021 12:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99970 * 2 1 4 4 C 1.38546 * 120.06730 * 359.97438 * 3 2 1 5 5 C 1.38283 * 120.01449 * 179.97438 * 4 3 2 6 6 C 1.38211 * 120.14770 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.92494 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47178 * 105.00076 * 7 6 5 9 9 Si 1.86300 * 109.47152 * 344.99998 * 7 6 5 10 10 H 1.48498 * 109.47280 * 60.00265 * 9 7 6 11 11 H 1.48498 * 109.46944 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46984 * 299.99984 * 9 7 6 13 13 C 1.38352 * 120.13946 * 0.02562 * 6 5 4 14 14 Br 1.89108 * 120.00633 * 179.97438 * 13 6 5 15 15 C 1.38602 * 119.98354 * 359.65585 * 13 6 5 16 16 O 1.36016 * 120.07345 * 180.32430 * 15 13 6 17 17 S 1.52198 * 113.99608 * 270.29373 * 16 15 13 18 18 O 1.42101 * 104.27461 * 191.07639 * 17 16 15 19 19 O 1.42102 * 104.27810 * 318.93074 * 17 16 15 20 20 C 1.81400 * 104.44960 * 75.00317 * 17 16 15 21 21 C 1.53000 * 109.46854 * 179.97438 * 20 17 16 22 22 C 1.52996 * 109.46926 * 179.97438 * 21 20 17 23 23 Si 1.86299 * 109.47241 * 180.02562 * 22 21 20 24 24 C 1.86302 * 109.47228 * 60.00522 * 23 22 21 25 25 C 1.86301 * 109.47325 * 180.02562 * 23 22 21 26 26 C 1.86297 * 109.47194 * 300.00340 * 23 22 21 27 27 H 1.09002 * 109.47382 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00137 * 1 2 3 30 30 H 1.07995 * 119.99442 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.92410 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46802 * 224.99987 * 7 6 5 33 33 H 0.96700 * 114.00081 * 299.99713 * 8 7 6 34 34 H 1.08990 * 109.47016 * 299.99573 * 20 17 16 35 35 H 1.08997 * 109.46808 * 60.00240 * 20 17 16 36 36 H 1.09001 * 109.47765 * 300.00345 * 21 20 17 37 37 H 1.09000 * 109.47138 * 60.00729 * 21 20 17 38 38 H 1.08996 * 109.47608 * 300.00422 * 22 21 20 39 39 H 1.08999 * 109.47059 * 60.00909 * 22 21 20 40 40 H 1.09001 * 109.46915 * 59.99759 * 24 23 22 41 41 H 1.08990 * 109.47283 * 180.02562 * 24 23 22 42 42 H 1.09005 * 109.46584 * 300.00147 * 24 23 22 43 43 H 1.09001 * 109.47035 * 59.99968 * 25 23 22 44 44 H 1.09001 * 109.47379 * 179.97438 * 25 23 22 45 45 H 1.09001 * 109.47179 * 300.00461 * 25 23 22 46 46 H 1.09003 * 109.47425 * 59.99978 * 26 23 22 47 47 H 1.09003 * 109.46907 * 179.97438 * 26 23 22 48 48 H 1.08999 * 109.47344 * 299.99529 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3745 -0.0005 5 6 1.9221 3.6061 0.0000 6 6 3.3022 3.6807 0.0005 7 6 3.9824 5.0256 0.0005 8 8 4.5081 5.2935 1.3020 9 14 2.7489 6.3454 -0.4548 10 1 1.6417 6.3508 0.5347 11 1 3.4194 7.6704 -0.4554 12 1 2.2027 6.0669 -1.8073 13 6 4.0605 2.5235 0.0000 14 35 5.9486 2.6300 0.0000 15 6 3.4360 1.2862 0.0061 16 8 4.1797 0.1473 0.0123 17 16 4.5246 -0.3742 -1.3753 18 8 5.0550 -1.6714 -1.1403 19 8 3.3299 -0.1958 -2.1237 20 6 5.8216 0.7458 -1.9703 21 6 6.2585 0.3203 -3.3735 22 6 7.3520 1.2652 -3.8756 23 14 7.8835 0.7477 -5.5845 24 6 6.4223 0.8205 -6.7380 25 6 9.2156 1.8979 -6.1956 26 6 8.5445 -0.9931 -5.5287 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 0.2147 2.3192 -0.0005 31 1 1.3335 4.5116 0.0000 32 1 4.7952 5.0216 -0.7258 33 1 3.8392 5.3121 2.0002 34 1 5.4353 1.7643 -2.0029 35 1 6.6764 0.7027 -1.2954 36 1 6.6450 -0.6984 -3.3406 37 1 5.4039 0.3630 -4.0487 38 1 6.9652 2.2837 -3.9086 39 1 8.2068 1.2229 -3.2006 40 1 6.0356 1.8391 -6.7706 41 1 6.7332 0.5173 -7.7377 42 1 5.6432 0.1473 -6.3803 43 1 10.0704 1.8549 -5.5206 44 1 9.5269 1.5948 -7.1953 45 1 8.8293 2.9166 -6.2281 46 1 7.7654 -1.6664 -5.1711 47 1 8.8551 -1.2960 -6.5287 48 1 9.3995 -1.0357 -4.8540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8767666_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:44:09 Heat of formation + Delta-G solvation = -168.412274 kcal Electronic energy + Delta-G solvation = -32476.173525 eV Core-core repulsion = 28023.411187 eV Total energy + Delta-G solvation = -4452.762338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 440.037 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.71809 -40.43085 -39.47382 -38.49124 -37.40054 -37.15961 -36.01911 -33.64572 -32.13565 -30.78976 -29.61288 -28.68628 -28.38979 -28.30647 -28.23230 -26.41622 -24.95507 -23.06504 -23.00071 -21.50732 -19.88916 -19.33326 -19.03649 -18.74205 -18.11331 -17.51899 -16.94825 -16.85090 -16.33228 -16.11765 -16.04051 -15.63743 -15.44067 -15.05293 -14.97505 -14.54814 -14.43694 -14.19099 -14.08110 -13.98924 -13.76665 -13.70103 -13.62695 -13.52805 -13.45674 -13.40242 -13.26433 -13.17509 -13.07049 -13.05734 -12.98045 -12.59261 -12.48901 -12.33527 -12.15548 -12.02433 -11.89537 -11.66601 -11.49909 -11.01766 -10.70974 -10.68431 -10.47426 -10.45228 -10.16567 -9.59178 -1.25900 -0.49022 -0.23305 0.02773 0.81375 1.14676 1.47671 1.59461 1.89789 1.94573 1.97175 1.99286 2.01020 2.02032 2.40505 2.72616 2.73684 3.22440 3.30867 3.45863 3.59322 3.62057 3.63802 3.70650 3.79384 4.13200 4.21281 4.31413 4.33164 4.33782 4.46960 4.58007 4.60263 4.66926 4.73163 4.76660 4.81712 4.83314 4.84023 4.86568 4.87176 4.88384 4.88768 5.07308 5.08954 5.45367 5.59680 5.66238 5.67497 5.99233 6.74086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.327 6.327 3 C 0.154 3.846 4 C -0.164 4.164 5 C -0.053 4.053 6 C -0.113 4.113 7 C -0.093 4.093 8 O -0.539 6.539 9 Si 0.980 3.020 10 H -0.226 1.226 11 H -0.271 1.271 12 H -0.247 1.247 13 C -0.062 4.062 14 Br 0.001 6.999 15 C 0.025 3.975 16 O -0.656 6.656 17 S 2.568 3.432 18 O -0.967 6.967 19 O -0.964 6.964 20 C -0.636 4.636 21 C -0.115 4.115 22 C -0.412 4.412 23 Si 1.068 2.932 24 C -0.470 4.470 25 C -0.460 4.460 26 C -0.475 4.475 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.189 0.811 31 H 0.179 0.821 32 H 0.124 0.876 33 H 0.391 0.609 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 7.823 -0.643 9.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.239 6.239 3 C 0.104 3.896 4 C -0.183 4.183 5 C -0.072 4.072 6 C -0.116 4.116 7 C -0.202 4.202 8 O -0.346 6.346 9 Si 0.801 3.199 10 H -0.149 1.149 11 H -0.196 1.196 12 H -0.170 1.170 13 C -0.144 4.144 14 Br 0.088 6.912 15 C -0.020 4.020 16 O -0.615 6.615 17 S 2.669 3.331 18 O -0.965 6.965 19 O -0.962 6.962 20 C -0.767 4.767 21 C -0.153 4.153 22 C -0.498 4.498 23 Si 1.260 2.740 24 C -0.576 4.576 25 C -0.567 4.567 26 C -0.580 4.580 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.207 0.793 31 H 0.196 0.804 32 H 0.142 0.858 33 H 0.240 0.760 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.373 7.596 -0.934 8.814 hybrid contribution 0.068 -0.739 0.438 0.861 sum -4.305 6.857 -0.496 8.112 Atomic orbital electron populations 1.23658 0.74620 1.06530 1.03824 1.86176 1.25074 1.25785 1.86888 1.19218 0.89767 0.87276 0.93344 1.21760 1.02907 0.89684 1.03938 1.21548 0.92735 0.99370 0.93520 1.20374 0.93996 0.94688 1.02574 1.25354 1.07559 0.96794 0.90494 1.86583 1.38591 1.93303 1.16090 0.85274 0.76806 0.76144 0.81701 1.14889 1.19608 1.16987 1.21920 0.92914 0.93077 1.06520 1.96807 0.99353 1.98606 1.96434 1.17211 0.87327 0.81467 1.15961 1.85742 1.72092 1.46188 1.57479 1.06288 0.77053 0.76387 0.73394 1.93580 1.81849 1.38025 1.83042 1.93591 1.44190 1.86632 1.71822 1.31619 1.18170 1.16887 1.10057 1.21229 1.01566 1.01534 0.91009 1.26293 1.01544 1.03562 1.18366 0.78322 0.65595 0.65209 0.64890 1.26368 1.15278 1.04739 1.11190 1.26240 1.13183 1.11130 1.06180 1.26441 1.06756 1.20394 1.04427 0.89443 0.86663 0.90082 0.79344 0.80366 0.85789 0.76005 0.82761 0.82887 0.89741 0.89115 0.88701 0.89325 0.90766 0.91364 0.91420 0.91237 0.91460 0.90912 0.91531 0.91353 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.33 -2.17 9.73 -72.65 -0.71 -2.88 16 3 C 0.15 0.70 5.93 22.56 0.13 0.84 16 4 C -0.16 0.70 9.04 22.35 0.20 0.90 16 5 C -0.05 0.34 8.65 22.27 0.19 0.53 16 6 C -0.11 0.31 5.26 -19.84 -0.10 0.20 16 7 C -0.09 0.48 2.02 71.24 0.14 0.62 16 8 O -0.54 2.15 12.70 -148.98 -1.89 0.26 16 9 Si 0.98 -7.55 25.49 68.60 1.75 -5.80 16 10 H -0.23 2.47 6.73 99.48 0.67 3.14 16 11 H -0.27 0.84 7.11 99.48 0.71 1.55 16 12 H -0.25 1.73 7.11 99.48 0.71 2.43 16 13 C -0.06 -0.16 5.55 22.38 0.12 -0.04 16 14 Br 0.00 0.00 25.75 -20.37 -0.52 -0.52 16 15 C 0.03 0.18 4.81 22.58 0.11 0.29 16 16 O -0.66 -7.35 9.29 -60.75 -0.56 -7.91 16 17 S 2.57 27.94 5.17 -56.49 -0.29 27.65 16 18 O -0.97 -17.33 18.09 -118.57 -2.15 -19.47 16 19 O -0.96 -12.89 15.82 -117.14 -1.85 -14.74 16 20 C -0.64 -1.45 3.82 71.98 0.27 -1.18 16 21 C -0.11 0.02 4.59 30.59 0.14 0.16 16 22 C -0.41 1.70 4.45 71.98 0.32 2.02 16 23 Si 1.07 -5.48 12.19 68.60 0.84 -4.64 16 24 C -0.47 1.21 8.65 113.37 0.98 2.19 16 25 C -0.46 1.58 8.65 113.37 0.98 2.57 16 26 C -0.47 0.65 8.65 113.37 0.98 1.63 16 27 H 0.09 -0.83 7.66 -2.39 -0.02 -0.84 16 28 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.08 -0.61 7.66 -2.38 -0.02 -0.63 16 30 H 0.19 -2.21 6.30 -2.91 -0.02 -2.23 16 31 H 0.18 -2.32 4.87 -2.91 -0.01 -2.33 16 32 H 0.12 -0.66 7.22 -2.39 -0.02 -0.68 16 33 H 0.39 -4.33 8.70 -74.06 -0.64 -4.98 16 34 H 0.15 -0.13 5.33 -2.40 -0.01 -0.15 16 35 H 0.15 0.00 6.77 -2.39 -0.02 -0.02 16 36 H 0.08 -0.07 7.79 -2.39 -0.02 -0.09 16 37 H 0.09 -0.19 7.79 -2.39 -0.02 -0.21 16 38 H 0.09 -0.60 7.96 -2.39 -0.02 -0.62 16 39 H 0.09 -0.46 7.96 -2.39 -0.02 -0.48 16 40 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 41 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 42 H 0.07 -0.13 7.79 -2.38 -0.02 -0.14 16 43 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 44 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 45 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 46 H 0.07 -0.04 7.79 -2.39 -0.02 -0.05 16 47 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 48 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 Total: 0.00 -25.89 410.53 1.26 -24.64 By element: Atomic # 1 Polarization: -9.46 SS G_CDS: 1.06 Total: -8.40 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.59 Total: 11.81 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -7.16 Total: -44.74 kcal Atomic # 14 Polarization: -13.03 SS G_CDS: 2.58 Total: -10.44 kcal Atomic # 16 Polarization: 27.94 SS G_CDS: -0.29 Total: 27.65 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.52 Total: -0.52 kcal Total: -25.89 1.26 -24.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8767666_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.776 kcal (2) G-P(sol) polarization free energy of solvation -25.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds