Wall clock time and date at job start Mon Mar 8 2021 13:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35995 * 117.00200 * 2 1 4 4 C 1.39118 * 120.06569 * 179.97438 * 3 2 1 5 5 O 1.36010 * 120.07698 * 0.02562 * 4 3 2 6 6 S 1.52204 * 114.00378 * 93.22900 * 5 4 3 7 7 O 1.42109 * 104.27352 * 39.92368 * 6 5 4 8 8 O 1.42097 * 104.27905 * 167.78126 * 6 5 4 9 9 C 1.81398 * 104.44812 * 283.85536 * 6 5 4 10 10 H 1.09001 * 112.84945 * 53.09548 * 9 6 5 11 11 C 1.53782 * 113.61343 * 184.28993 * 9 6 5 12 12 C 1.53779 * 87.08014 * 139.97967 * 11 9 6 13 13 H 1.09001 * 113.61817 * 220.02363 * 12 11 9 14 14 O 1.42898 * 113.61434 * 89.19997 * 12 11 9 15 15 C 1.42910 * 114.00072 * 149.99995 * 14 12 11 16 16 C 1.50702 * 109.47232 * 180.02562 * 15 14 12 17 17 C 1.38233 * 119.99919 * 269.72913 * 16 15 14 18 18 C 1.38230 * 119.99650 * 179.81122 * 17 16 15 19 19 C 1.38236 * 120.00406 * 0.39424 * 18 17 16 20 20 C 1.38232 * 119.99413 * 359.85677 * 19 18 17 21 21 C 1.38232 * 119.99809 * 89.99946 * 16 15 14 22 22 C 1.53779 * 87.08237 * 334.56718 * 12 11 9 23 23 C 1.38641 * 119.84466 * 179.76805 * 4 3 2 24 24 Br 1.89105 * 120.01011 * 180.27799 * 23 4 3 25 25 C 1.38314 * 119.98395 * 0.53063 * 23 4 3 26 26 C 1.50700 * 119.93089 * 179.74478 * 25 23 4 27 27 O 1.42908 * 109.47119 * 74.72965 * 26 25 23 28 28 Si 1.86306 * 109.46979 * 194.72059 * 26 25 23 29 29 C 1.38255 * 120.13581 * 359.46766 * 25 23 4 30 30 C 1.38240 * 120.15040 * 0.25499 * 29 25 23 31 31 H 1.09003 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46707 * 299.99941 * 1 2 3 33 33 H 1.09000 * 109.47028 * 59.99702 * 1 2 3 34 34 H 1.08997 * 113.61400 * 254.52682 * 11 9 6 35 35 H 1.08998 * 113.61207 * 25.43477 * 11 9 6 36 36 H 1.08996 * 109.46906 * 300.00308 * 15 14 12 37 37 H 1.09001 * 109.46565 * 60.00163 * 15 14 12 38 38 H 1.07998 * 119.99819 * 359.97438 * 17 16 15 39 39 H 1.08006 * 119.99696 * 180.22605 * 18 17 16 40 40 H 1.07994 * 120.00339 * 179.83835 * 19 18 17 41 41 H 1.08001 * 119.99575 * 179.97438 * 20 19 18 42 42 H 1.08004 * 119.99849 * 359.97438 * 21 16 15 43 43 H 1.08998 * 113.61799 * 270.88609 * 22 12 11 44 44 H 1.08999 * 113.61431 * 139.98020 * 22 12 11 45 45 H 1.08991 * 109.47572 * 314.72758 * 26 25 23 46 46 H 0.96698 * 114.00184 * 59.99476 * 27 26 25 47 47 H 1.48499 * 110.00056 * 179.97438 * 28 26 25 48 48 H 1.48502 * 110.00188 * 301.32305 * 28 26 25 49 49 H 1.08003 * 119.92210 * 180.27789 * 29 25 23 50 50 H 1.08000 * 119.98970 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4356 1.2861 0.0005 5 8 4.1792 0.1472 0.0005 6 16 4.5838 -0.3281 -1.3876 7 8 4.9088 0.8662 -2.0860 8 8 5.5667 -1.3249 -1.1441 9 6 3.0764 -1.0732 -2.0681 10 1 2.2164 -0.4051 -2.0229 11 6 3.2791 -1.7240 -3.4466 12 6 2.3601 -2.8567 -2.9596 13 1 2.6876 -3.8489 -3.2703 14 8 0.9749 -2.6224 -3.2210 15 6 0.2122 -3.8137 -3.4246 16 6 -1.2258 -3.4501 -3.6912 17 6 -2.1175 -3.3416 -2.6404 18 6 -3.4356 -3.0042 -2.8846 19 6 -3.8640 -2.7834 -4.1802 20 6 -2.9734 -2.8970 -5.2314 21 6 -1.6544 -3.2306 -4.9869 22 6 2.7907 -2.4855 -1.5308 23 6 4.0603 2.5237 -0.0043 24 35 5.9484 2.6302 -0.0116 25 6 3.3023 3.6807 0.0014 26 6 3.9826 5.0254 0.0019 27 8 4.5092 5.2933 -1.2993 28 14 2.7488 6.3453 0.4562 29 6 1.9218 3.6060 0.0008 30 6 1.2930 2.3748 -0.0001 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.8596 -1.1445 -4.2689 35 1 4.3046 -2.0431 -3.6322 36 1 0.6127 -4.3600 -4.2785 37 1 0.2701 -4.4389 -2.5336 38 1 -1.7837 -3.5178 -1.6286 39 1 -4.1314 -2.9159 -2.0633 40 1 -4.8943 -2.5224 -4.3712 41 1 -3.3082 -2.7248 -6.2437 42 1 -0.9586 -3.3192 -5.8082 43 1 3.6827 -3.0127 -1.1926 44 1 1.9769 -2.5207 -0.8065 45 1 4.7948 5.0214 0.7287 46 1 3.8409 5.3119 -1.9979 47 1 3.4074 7.6762 0.4609 48 1 1.6204 6.3398 -0.5092 49 1 1.3332 4.5115 0.0008 50 1 0.2145 2.3195 -0.0001 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8767666_15608174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:33:05 Heat of formation + Delta-G solvation = -95.981882 kcal Electronic energy + Delta-G solvation = -40776.444076 eV Core-core repulsion = 35491.678764 eV Total energy + Delta-G solvation = -5284.765312 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 485.037 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -42.63114 -40.86907 -40.36964 -40.01861 -39.51914 -38.13393 -37.27147 -37.06637 -36.99479 -33.39986 -32.79496 -32.14658 -31.93024 -30.55962 -28.85409 -27.55421 -27.05670 -26.57771 -26.42943 -24.81995 -23.61351 -23.02384 -22.39917 -21.80236 -20.97116 -19.74380 -19.50018 -18.93205 -18.57898 -18.28931 -17.95234 -17.75667 -17.32033 -17.07076 -16.75242 -16.69374 -16.40173 -16.13488 -16.09643 -15.84929 -15.59445 -15.45268 -15.33922 -14.90793 -14.77071 -14.43578 -14.36963 -14.25301 -14.11339 -13.82969 -13.72065 -13.62037 -13.53092 -13.37980 -13.28842 -13.26007 -13.13533 -12.99775 -12.75776 -12.64544 -12.36910 -12.18838 -12.11935 -11.97428 -11.81182 -11.79004 -11.66806 -11.21225 -11.07933 -10.67409 -10.65486 -10.03266 -9.94484 -9.88297 -9.64547 -5.07204 -1.02673 -0.35372 -0.23107 0.21267 0.37764 0.37923 1.00767 1.16193 1.43902 1.75096 1.86513 1.96820 2.31211 2.62561 2.83516 2.91628 3.00558 3.21735 3.24850 3.31794 3.39780 3.44340 3.50217 3.70664 3.73062 3.75003 3.76821 3.88475 3.93965 3.96751 3.98424 4.06761 4.12626 4.18744 4.30382 4.30882 4.34014 4.34952 4.48638 4.48931 4.50320 4.59116 4.61322 4.69413 4.73054 4.79604 4.85388 4.88422 4.93178 4.99729 5.00326 5.41870 5.49890 5.53040 5.80215 5.94469 6.06851 6.39673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.300 6.300 3 C 0.141 3.859 4 C 0.058 3.942 5 O -0.644 6.644 6 S 2.579 3.421 7 O -0.939 6.939 8 O -0.920 6.920 9 C -0.626 4.626 10 H 0.157 0.843 11 C -0.111 4.111 12 C 0.079 3.921 13 H 0.088 0.912 14 O -0.355 6.355 15 C 0.100 3.900 16 C -0.093 4.093 17 C -0.100 4.100 18 C -0.124 4.124 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.098 4.098 22 C -0.124 4.124 23 C -0.009 4.009 24 Br 0.011 6.989 25 C -0.116 4.116 26 C -0.080 4.080 27 O -0.511 6.511 28 Si 0.694 3.306 29 C -0.057 4.057 30 C -0.177 4.177 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.125 0.875 46 H 0.376 0.624 47 H -0.250 1.250 48 H -0.255 1.255 49 H 0.151 0.849 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 -0.741 1.161 9.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.213 6.213 3 C 0.091 3.909 4 C 0.013 3.987 5 O -0.602 6.602 6 S 2.675 3.325 7 O -0.937 6.937 8 O -0.918 6.918 9 C -0.734 4.734 10 H 0.174 0.826 11 C -0.149 4.149 12 C 0.020 3.980 13 H 0.106 0.894 14 O -0.274 6.274 15 C 0.024 3.976 16 C -0.093 4.093 17 C -0.118 4.118 18 C -0.142 4.142 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.116 4.116 22 C -0.162 4.162 23 C -0.092 4.092 24 Br 0.099 6.901 25 C -0.119 4.119 26 C -0.190 4.190 27 O -0.317 6.317 28 Si 0.594 3.406 29 C -0.077 4.077 30 C -0.197 4.197 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.143 0.857 46 H 0.223 0.777 47 H -0.174 1.174 48 H -0.180 1.180 49 H 0.168 0.832 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.934 0.126 1.466 8.069 hybrid contribution -1.026 -0.789 -1.314 1.844 sum -8.959 -0.663 0.152 8.985 Atomic orbital electron populations 1.23302 0.76518 1.05349 1.02158 1.86215 1.22875 1.24777 1.87431 1.18926 0.89570 0.86493 0.95869 1.16777 0.85944 0.82015 1.13989 1.85750 1.71783 1.45112 1.57513 1.06166 0.77011 0.75520 0.73829 1.93719 1.82521 1.43675 1.73790 1.93641 1.54552 1.61442 1.82189 1.32093 1.22553 1.09808 1.08938 0.82556 1.22890 1.00894 0.97221 0.93928 1.22819 0.82241 0.98134 0.94821 0.89437 1.87960 1.18071 1.30147 1.91214 1.21444 0.88218 0.87201 1.00708 1.19558 0.94026 1.01989 0.93728 1.21057 0.93374 0.98781 0.98585 1.21187 0.95884 0.99983 0.97111 1.21266 0.99869 0.99040 0.92894 1.21208 0.93493 0.99886 0.99447 1.21100 0.96081 0.98186 0.96253 1.23158 1.03851 0.90599 0.98620 1.21819 0.93626 0.92732 1.01037 1.96871 0.98303 1.98605 1.96366 1.20125 0.93386 0.94966 1.03422 1.25186 1.06922 0.97327 0.89551 1.86719 1.36848 1.92517 1.15630 0.95028 0.77496 0.78059 0.90003 1.21201 0.93129 0.98482 0.94857 1.21264 1.01172 0.90692 1.06523 0.87171 0.91594 0.91706 0.88251 0.87769 0.91978 0.91984 0.85969 0.85783 0.85837 0.85745 0.85882 0.87292 0.88506 0.85678 0.77695 1.17447 1.18030 0.83153 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 101.05 0.99 0.91 16 2 O -0.30 0.20 7.79 -34.24 -0.27 -0.07 16 3 C 0.14 0.06 5.94 -39.13 -0.23 -0.17 16 4 C 0.06 0.18 4.85 -39.11 -0.19 0.00 16 5 O -0.64 -2.87 9.23 -54.27 -0.50 -3.37 16 6 S 2.58 11.35 4.97 -107.50 -0.53 10.81 16 7 O -0.94 -5.68 14.42 -67.04 -0.97 -6.65 16 8 O -0.92 -6.33 17.39 -67.04 -1.17 -7.49 16 9 C -0.63 -0.63 3.23 -25.92 -0.08 -0.71 16 10 H 0.16 0.06 5.96 -51.93 -0.31 -0.25 16 11 C -0.11 0.01 7.50 -25.92 -0.19 -0.18 16 12 C 0.08 -0.06 4.37 -25.92 -0.11 -0.17 16 13 H 0.09 -0.22 7.87 -51.93 -0.41 -0.62 16 14 O -0.35 -0.07 10.26 -35.23 -0.36 -0.43 16 15 C 0.10 -0.11 5.90 36.01 0.21 0.10 16 16 C -0.09 0.01 5.51 -104.62 -0.58 -0.57 16 17 C -0.10 0.07 9.70 -39.59 -0.38 -0.32 16 18 C -0.12 0.11 10.05 -39.59 -0.40 -0.29 16 19 C -0.11 0.07 10.05 -39.58 -0.40 -0.33 16 20 C -0.12 0.04 10.05 -39.59 -0.40 -0.36 16 21 C -0.10 0.00 9.70 -39.59 -0.38 -0.38 16 22 C -0.12 0.02 7.48 -25.92 -0.19 -0.17 16 23 C -0.01 -0.03 5.50 -39.40 -0.22 -0.25 16 24 Br 0.01 0.06 29.46 -68.01 -2.00 -1.95 16 25 C -0.12 -0.06 5.26 -104.59 -0.55 -0.61 16 26 C -0.08 0.00 2.02 36.01 0.07 0.07 16 27 O -0.51 -0.79 12.68 -35.23 -0.45 -1.23 16 28 Si 0.69 -1.49 30.24 -169.99 -5.14 -6.63 16 29 C -0.06 0.11 8.65 -39.57 -0.34 -0.23 16 30 C -0.18 0.37 9.04 -39.45 -0.36 0.01 16 31 H 0.11 -0.55 8.14 -51.93 -0.42 -0.97 16 32 H 0.07 -0.36 7.66 -51.93 -0.40 -0.76 16 33 H 0.06 -0.31 7.66 -51.93 -0.40 -0.71 16 34 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 35 H 0.10 -0.13 8.10 -51.93 -0.42 -0.55 16 36 H 0.06 -0.13 8.08 -51.93 -0.42 -0.55 16 37 H 0.06 -0.14 8.08 -51.93 -0.42 -0.56 16 38 H 0.12 -0.29 8.06 -52.49 -0.42 -0.71 16 39 H 0.12 -0.33 8.06 -52.48 -0.42 -0.76 16 40 H 0.12 -0.28 8.06 -52.49 -0.42 -0.70 16 41 H 0.12 -0.23 8.06 -52.49 -0.42 -0.66 16 42 H 0.12 -0.15 8.06 -52.48 -0.42 -0.57 16 43 H 0.11 -0.04 7.51 -51.93 -0.39 -0.43 16 44 H 0.10 -0.09 8.07 -51.93 -0.42 -0.51 16 45 H 0.13 0.00 7.23 -51.93 -0.38 -0.37 16 46 H 0.38 -0.59 8.70 45.56 0.40 -0.20 16 47 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 48 H -0.26 0.36 6.68 56.52 0.38 0.73 16 49 H 0.15 -0.65 4.84 -52.48 -0.25 -0.90 16 50 H 0.16 -0.80 6.30 -52.49 -0.33 -1.13 16 LS Contribution 437.47 15.07 6.59 6.59 Total: 0.00 -10.78 437.47 -14.86 -25.64 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: -6.33 Total: -11.56 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -3.73 Total: -3.66 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -3.71 Total: -19.24 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: -5.14 Total: -6.63 kcal Atomic # 16 Polarization: 11.35 SS G_CDS: -0.53 Total: 10.81 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -2.00 Total: -1.95 kcal Total LS contribution 6.59 Total: 6.59 kcal Total: -10.78 -14.86 -25.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8767666_15608174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.342 kcal (2) G-P(sol) polarization free energy of solvation -10.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds