Wall clock time and date at job start Mon Mar 8 2021 14:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35989 * 117.00317 * 2 1 4 4 C 1.39117 * 120.07057 * 180.02562 * 3 2 1 5 5 O 1.36018 * 120.07652 * 359.97438 * 4 3 2 6 6 S 1.52194 * 114.00147 * 270.02720 * 5 4 3 7 7 O 1.42097 * 104.27794 * 191.07132 * 6 5 4 8 8 O 1.42106 * 104.27314 * 318.92345 * 6 5 4 9 9 C 1.81397 * 104.45382 * 74.99434 * 6 5 4 10 10 H 1.09003 * 112.85179 * 311.20369 * 9 6 5 11 11 C 1.53779 * 113.61190 * 82.50281 * 9 6 5 12 12 C 1.53781 * 87.08411 * 89.11542 * 11 9 6 13 13 H 1.08997 * 113.69167 * 270.87768 * 12 11 9 14 14 C 1.50700 * 113.61245 * 139.97767 * 12 11 9 15 15 C 1.38233 * 120.00635 * 322.23209 * 14 12 11 16 16 C 1.38237 * 120.00200 * 179.78862 * 15 14 12 17 17 C 1.38230 * 119.99877 * 0.44141 * 16 15 14 18 18 C 1.38237 * 119.99955 * 359.81391 * 17 16 15 19 19 C 1.38235 * 120.00364 * 359.97438 * 18 17 16 20 20 C 1.53783 * 113.61645 * 179.97438 * 9 6 5 21 21 C 1.38640 * 119.85044 * 180.02562 * 4 3 2 22 22 Br 1.89101 * 120.01071 * 179.97438 * 21 4 3 23 23 C 1.38315 * 119.98384 * 359.97438 * 21 4 3 24 24 C 1.50694 * 119.93397 * 179.72702 * 23 21 4 25 25 O 1.42899 * 109.47555 * 74.99923 * 24 23 21 26 26 Si 1.86306 * 109.47267 * 195.00075 * 24 23 21 27 27 C 1.38254 * 120.13365 * 359.97438 * 23 21 4 28 28 C 1.38230 * 120.15301 * 0.02562 * 27 23 21 29 29 H 1.09001 * 109.46690 * 299.99838 * 1 2 3 30 30 H 1.08989 * 109.46898 * 59.99819 * 1 2 3 31 31 H 1.09005 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.08998 * 113.61612 * 203.67033 * 11 9 6 33 33 H 1.09009 * 113.61651 * 334.57185 * 11 9 6 34 34 H 1.08002 * 119.99366 * 0.02562 * 15 14 12 35 35 H 1.07992 * 119.99541 * 180.27862 * 16 15 14 36 36 H 1.07993 * 120.00084 * 179.83288 * 17 16 15 37 37 H 1.08003 * 119.99650 * 179.97438 * 18 17 16 38 38 H 1.07998 * 120.00348 * 180.02562 * 19 18 17 39 39 H 1.08994 * 113.61216 * 25.43469 * 20 9 6 40 40 H 1.08997 * 113.60957 * 156.33886 * 20 9 6 41 41 H 1.09004 * 109.47236 * 314.99463 * 24 23 21 42 42 H 0.96695 * 114.00175 * 60.00406 * 25 24 23 43 43 H 1.48497 * 109.99865 * 58.67739 * 26 24 23 44 44 H 1.48501 * 109.99893 * 179.97438 * 26 24 23 45 45 H 1.08008 * 119.92038 * 180.02562 * 27 23 21 46 46 H 1.08003 * 119.99078 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4356 1.2861 -0.0005 5 8 4.1793 0.1472 -0.0005 6 16 4.5178 -0.3712 1.3898 7 8 5.4921 -1.3797 1.1602 8 8 4.8348 0.7984 2.1322 9 6 2.9707 -1.1051 1.9884 10 1 2.1115 -0.4474 1.8570 11 6 2.7338 -2.5388 1.4849 12 6 3.5039 -3.0181 2.7267 13 1 4.5794 -3.1006 2.5703 14 6 2.9100 -4.2454 3.3688 15 6 1.5375 -4.3979 3.4302 16 6 0.9929 -5.5257 4.0153 17 6 1.8206 -6.4967 4.5471 18 6 3.1931 -6.3417 4.4904 19 6 3.7378 -5.2159 3.9014 20 6 3.0787 -1.7036 3.4008 21 6 4.0604 2.5237 0.0000 22 35 5.9484 2.6302 0.0000 23 6 3.3023 3.6807 0.0005 24 6 3.9826 5.0253 0.0073 25 8 4.5139 5.2970 -1.2911 26 14 2.7471 6.3440 0.4611 27 6 1.9218 3.6059 0.0000 28 6 1.2931 2.3749 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6842 -2.8326 1.4816 33 1 3.2395 -2.7607 0.5451 34 1 0.8908 -3.6376 3.0176 35 1 -0.0793 -5.6469 4.0592 36 1 1.3951 -7.3765 5.0066 37 1 3.8398 -7.1001 4.9063 38 1 4.8101 -5.0950 3.8567 39 1 3.8628 -1.2511 4.0079 40 1 2.1234 -1.7690 3.9215 41 1 4.7921 5.0194 0.7373 42 1 3.8482 5.3177 -1.9920 43 1 2.1637 6.0556 1.7959 44 1 3.4058 7.6749 0.4719 45 1 1.3333 4.5115 0.0000 46 1 0.2145 2.3195 -0.0014 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8767666_17781816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:35:06 Heat of formation + Delta-G solvation = -60.403916 kcal Electronic energy + Delta-G solvation = -36025.999895 eV Core-core repulsion = 31216.997170 eV Total energy + Delta-G solvation = -4809.002725 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.72228 -41.21038 -40.39551 -39.47090 -38.94166 -38.41827 -37.41032 -37.17185 -33.48362 -32.26696 -32.10686 -31.78825 -30.62401 -28.59114 -27.09228 -26.97412 -26.40973 -24.88468 -23.85051 -23.20839 -22.72182 -21.64932 -21.00106 -19.76000 -19.30789 -18.78034 -18.66979 -18.24614 -17.84742 -17.55699 -16.96721 -16.53889 -16.42524 -16.36997 -16.05441 -15.97824 -15.52855 -15.36329 -15.24351 -14.93225 -14.62176 -14.52347 -14.34898 -14.25854 -14.22126 -13.78428 -13.72995 -13.66567 -13.51236 -13.37880 -13.25952 -13.23051 -13.18914 -12.54112 -12.50502 -12.46323 -12.34826 -11.98056 -11.96163 -11.87610 -11.72054 -11.49835 -11.38745 -11.35174 -10.50071 -10.15070 -9.83595 -9.62288 -9.60413 -5.02706 -1.24895 -0.38351 -0.26425 0.21744 0.38857 0.48349 0.82472 1.25316 1.69068 1.87479 2.02226 2.03777 2.36483 2.63172 2.78922 2.95074 3.12701 3.31594 3.44920 3.48785 3.54928 3.64172 3.67012 3.74241 3.85597 3.97502 4.10795 4.14235 4.27405 4.27832 4.34625 4.38549 4.43629 4.45443 4.49114 4.53228 4.59715 4.60690 4.62109 4.73474 4.74664 4.77883 4.83916 4.93026 5.05878 5.10612 5.14171 5.16172 5.56025 5.62817 5.68708 5.97068 6.10105 6.80960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.315 6.315 3 C 0.138 3.862 4 C 0.020 3.980 5 O -0.654 6.654 6 S 2.581 3.419 7 O -0.961 6.961 8 O -0.969 6.969 9 C -0.626 4.626 10 H 0.178 0.822 11 C -0.075 4.075 12 C -0.104 4.104 13 H 0.094 0.906 14 C -0.078 4.078 15 C -0.119 4.119 16 C -0.123 4.123 17 C -0.134 4.134 18 C -0.130 4.130 19 C -0.137 4.137 20 C -0.087 4.087 21 C -0.038 4.038 22 Br -0.033 7.033 23 C -0.125 4.125 24 C -0.097 4.097 25 O -0.545 6.545 26 Si 0.812 3.188 27 C -0.036 4.036 28 C -0.157 4.157 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.396 0.604 43 H -0.271 1.271 44 H -0.300 1.300 45 H 0.195 0.805 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.146 1.770 -1.029 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.228 6.228 3 C 0.088 3.912 4 C -0.025 4.025 5 O -0.613 6.613 6 S 2.680 3.320 7 O -0.959 6.959 8 O -0.967 6.967 9 C -0.736 4.736 10 H 0.195 0.805 11 C -0.113 4.113 12 C -0.123 4.123 13 H 0.113 0.887 14 C -0.078 4.078 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.126 4.126 21 C -0.121 4.121 22 Br 0.054 6.946 23 C -0.128 4.128 24 C -0.205 4.205 25 O -0.353 6.353 26 Si 0.714 3.286 27 C -0.054 4.054 28 C -0.175 4.175 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.154 0.846 41 H 0.114 0.886 42 H 0.246 0.754 43 H -0.197 1.197 44 H -0.228 1.228 45 H 0.212 0.788 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.194 2.308 -0.353 14.385 hybrid contribution 0.833 -0.980 0.287 1.318 sum -13.361 1.327 -0.067 13.427 Atomic orbital electron populations 1.23798 0.74137 1.07158 1.04346 1.86238 1.25327 1.24298 1.86977 1.19037 0.88388 0.88127 0.95627 1.17264 0.87424 0.81348 1.16431 1.85730 1.72962 1.45626 1.56958 1.05889 0.77943 0.74713 0.73448 1.93575 1.58052 1.61271 1.83046 1.93642 1.83769 1.46582 1.72713 1.32248 1.21183 1.10766 1.09416 0.80497 1.22700 1.04138 0.87331 0.97111 1.21943 1.00648 0.92868 0.96792 0.88740 1.19617 0.94246 0.95043 0.98921 1.21264 0.93954 0.98729 0.99723 1.21482 1.01019 0.93869 0.97711 1.21494 0.93650 1.00085 0.99915 1.21399 0.96077 0.97837 0.99431 1.21322 1.00232 0.94736 0.99177 1.22823 1.05352 0.93166 0.91226 1.21959 0.91771 0.94366 1.03962 1.96806 1.02398 1.98655 1.96775 1.20456 0.94928 0.94008 1.03380 1.25680 1.06159 0.98667 0.89956 1.86574 1.39093 1.93291 1.16314 0.94042 0.79605 0.72542 0.82413 1.21491 0.91316 0.99989 0.92619 1.21851 1.03245 0.89078 1.03373 0.89325 0.89750 0.85677 0.84568 0.90704 0.83419 0.83810 0.84612 0.85071 0.86153 0.90637 0.84639 0.88648 0.75370 1.19706 1.22798 0.78837 0.77786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.32 1.95 7.27 -79.54 -0.58 1.37 16 3 C 0.14 -0.37 5.91 22.56 0.13 -0.24 16 4 C 0.02 0.13 4.80 22.58 0.11 0.24 16 5 O -0.65 -7.33 9.19 -60.77 -0.56 -7.89 16 6 S 2.58 29.22 4.93 -56.49 -0.28 28.94 16 7 O -0.96 -17.25 16.42 -118.57 -1.95 -19.20 16 8 O -0.97 -14.53 14.93 -118.57 -1.77 -16.30 16 9 C -0.63 -0.37 3.44 31.12 0.11 -0.26 16 10 H 0.18 -0.88 5.27 -2.39 -0.01 -0.90 16 11 C -0.07 0.05 6.87 31.12 0.21 0.26 16 12 C -0.10 -0.28 3.59 -11.03 -0.04 -0.32 16 13 H 0.09 0.66 6.97 -2.39 -0.02 0.65 16 14 C -0.08 -0.19 5.29 -19.87 -0.11 -0.29 16 15 C -0.12 0.19 8.60 22.27 0.19 0.38 16 16 C -0.12 0.17 10.05 22.27 0.22 0.40 16 17 C -0.13 -0.07 10.05 22.27 0.22 0.16 16 18 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 19 C -0.14 -0.59 9.71 22.27 0.22 -0.37 16 20 C -0.09 0.04 7.15 31.10 0.22 0.27 16 21 C -0.04 -0.30 5.57 22.38 0.12 -0.17 16 22 Br -0.03 -0.46 29.89 -20.37 -0.61 -1.07 16 23 C -0.12 0.00 5.26 -19.84 -0.10 -0.11 16 24 C -0.10 -0.01 2.02 71.23 0.14 0.13 16 25 O -0.54 -0.25 12.68 -148.98 -1.89 -2.14 16 26 Si 0.81 -4.99 29.91 68.60 2.05 -2.94 16 27 C -0.04 0.32 8.65 22.27 0.19 0.52 16 28 C -0.16 1.64 9.04 22.35 0.20 1.84 16 29 H 0.09 -1.77 7.66 -2.39 -0.02 -1.79 16 30 H 0.08 -1.56 7.66 -2.39 -0.02 -1.58 16 31 H 0.13 -2.28 8.14 -2.38 -0.02 -2.30 16 32 H 0.14 -0.99 6.32 -2.39 -0.02 -1.00 16 33 H 0.07 0.14 8.09 -2.38 -0.02 0.13 16 34 H 0.15 -1.13 6.67 -2.91 -0.02 -1.15 16 35 H 0.14 -0.89 8.06 -2.91 -0.02 -0.91 16 36 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 37 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 38 H 0.12 0.44 8.05 -2.91 -0.02 0.42 16 39 H 0.07 0.05 8.10 -2.39 -0.02 0.03 16 40 H 0.14 -0.80 7.71 -2.39 -0.02 -0.82 16 41 H 0.10 0.50 7.23 -2.38 -0.02 0.48 16 42 H 0.40 -3.78 8.70 -74.06 -0.64 -4.43 16 43 H -0.27 0.76 7.11 99.48 0.71 1.47 16 44 H -0.30 -0.76 7.11 99.48 0.71 -0.06 16 45 H 0.20 -3.49 5.11 -2.91 -0.01 -3.51 16 46 H 0.21 -4.11 6.30 -2.91 -0.02 -4.13 16 Total: 0.00 -33.93 397.45 -1.74 -35.67 By element: Atomic # 1 Polarization: -20.35 SS G_CDS: 0.45 Total: -19.90 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 3.39 Total: 3.46 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -6.74 Total: -44.15 kcal Atomic # 14 Polarization: -4.99 SS G_CDS: 2.05 Total: -2.94 kcal Atomic # 16 Polarization: 29.22 SS G_CDS: -0.28 Total: 28.94 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -0.61 Total: -1.07 kcal Total: -33.93 -1.74 -35.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8767666_17781816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.737 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds