Wall clock time and date at job start Mon Mar 8 2021 14:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86297 * 109.47207 * 2 1 4 4 C 1.86303 * 109.46793 * 240.00397 * 2 1 3 5 5 C 1.86298 * 109.47144 * 120.00436 * 2 1 3 6 6 C 1.53001 * 109.47136 * 60.00125 * 5 2 1 7 7 C 1.52998 * 109.46802 * 179.97438 * 6 5 2 8 8 S 1.81402 * 109.46921 * 179.97438 * 7 6 5 9 9 O 1.42102 * 110.54030 * 68.37624 * 8 7 6 10 10 O 1.42099 * 110.54513 * 291.62523 * 8 7 6 11 11 O 1.52199 * 104.45055 * 179.97438 * 8 7 6 12 12 C 1.35899 * 113.99742 * 75.00146 * 11 8 7 13 13 C 1.38711 * 120.05669 * 270.02033 * 12 11 8 14 14 C 1.38165 * 119.94709 * 179.97438 * 13 12 11 15 15 C 1.38246 * 120.05092 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.93780 * 179.97438 * 15 14 13 17 17 O 1.42894 * 109.46995 * 244.99727 * 16 15 14 18 18 Si 1.86299 * 109.47495 * 5.00270 * 16 15 14 19 19 H 1.48500 * 109.47260 * 59.99818 * 18 16 15 20 20 H 1.48497 * 109.47072 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47030 * 299.99846 * 18 16 15 22 22 C 1.38287 * 120.11689 * 359.74820 * 15 14 13 23 23 C 1.38124 * 120.04989 * 0.50727 * 22 15 14 24 24 C 1.50703 * 120.02582 * 179.77103 * 23 22 15 25 25 O 1.42898 * 109.47171 * 359.72384 * 24 23 22 26 26 H 1.09006 * 109.47043 * 299.99668 * 1 2 3 27 27 H 1.08999 * 109.47099 * 59.99463 * 1 2 3 28 28 H 1.08998 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47477 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47529 * 300.00273 * 3 2 1 31 31 H 1.09006 * 109.46847 * 60.00212 * 3 2 1 32 32 H 1.09002 * 109.47480 * 299.99742 * 4 2 1 33 33 H 1.08999 * 109.47184 * 60.00191 * 4 2 1 34 34 H 1.09003 * 109.46868 * 179.97438 * 4 2 1 35 35 H 1.08992 * 109.47163 * 299.99759 * 5 2 1 36 36 H 1.09011 * 109.46953 * 179.97438 * 5 2 1 37 37 H 1.09000 * 109.47233 * 59.99488 * 6 5 2 38 38 H 1.08996 * 109.46896 * 299.99691 * 6 5 2 39 39 H 1.09000 * 109.47533 * 59.99809 * 7 6 5 40 40 H 1.08996 * 109.47255 * 299.99608 * 7 6 5 41 41 H 1.08003 * 120.02737 * 0.02562 * 13 12 11 42 42 H 1.07994 * 119.97564 * 180.02562 * 14 13 12 43 43 H 1.09008 * 109.46761 * 125.00377 * 16 15 14 44 44 H 0.96704 * 114.00117 * 60.00413 * 17 16 15 45 45 H 1.07998 * 119.97482 * 180.27358 * 22 15 14 46 46 H 1.09002 * 109.47152 * 239.72168 * 24 23 22 47 47 H 1.09001 * 109.46980 * 119.72268 * 24 23 22 48 48 H 0.96698 * 113.99898 * 59.99612 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5213 5 6 2.4840 -0.8783 1.5210 6 6 1.9740 -2.3209 1.5209 7 6 2.4846 -3.0423 2.7698 8 16 1.8793 -4.7524 2.7701 9 8 2.4911 -5.4980 1.7265 10 8 0.4721 -4.7833 2.9648 11 8 2.4487 -5.3566 4.0457 12 6 1.8187 -4.9497 5.1790 13 6 2.2612 -3.8208 5.8528 14 6 1.6187 -3.4089 7.0045 15 6 0.5359 -4.1211 7.4857 16 6 -0.1627 -3.6698 8.7425 17 8 0.0061 -4.6568 9.7619 18 14 0.5694 -2.0549 9.3144 19 1 0.3940 -1.0292 8.2550 20 1 -0.1195 -1.6100 10.5524 21 1 2.0168 -2.2381 9.5912 22 6 0.0898 -5.2441 6.8133 23 6 0.7320 -5.6630 5.6645 24 6 0.2486 -6.8899 4.9350 25 8 -0.8734 -7.4434 5.6253 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5740 1.7565 0.0005 30 1 2.1207 2.2703 -0.8899 31 1 2.1207 2.2702 0.8901 32 1 2.1206 -1.9059 -1.5213 33 1 2.1206 -0.3642 -2.4112 34 1 3.5739 -0.8778 -1.5215 35 1 2.1207 -0.3646 2.4110 36 1 3.5741 -0.8787 1.5208 37 1 2.3373 -2.8346 0.6309 38 1 0.8841 -2.3208 1.5210 39 1 2.1217 -2.5287 3.6601 40 1 3.5746 -3.0423 2.7693 41 1 3.1068 -3.2639 5.4770 42 1 1.9625 -2.5299 7.5293 43 1 -1.2252 -3.5354 8.5393 44 1 0.9289 -4.8284 9.9944 45 1 -0.7590 -5.7962 7.1888 46 1 1.0501 -7.6276 4.8940 47 1 -0.0465 -6.6174 3.9217 48 1 -1.6259 -6.8406 5.6997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_8845266_14927650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:30:21 Heat of formation + Delta-G solvation = -209.732769 kcal Electronic energy + Delta-G solvation = -29455.156105 eV Core-core repulsion = 25340.419979 eV Total energy + Delta-G solvation = -4114.736126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 362.127 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.50710 -40.00842 -38.49307 -38.19183 -37.40334 -37.14397 -35.86444 -32.90083 -32.17786 -29.61283 -28.40594 -28.30921 -28.24740 -27.65333 -26.93382 -23.97514 -23.01323 -22.61316 -21.39832 -19.71749 -19.11089 -18.81700 -18.43345 -18.01532 -17.00307 -16.88402 -16.61829 -16.13585 -16.01387 -15.69547 -15.44571 -15.27723 -14.92636 -14.76537 -14.39591 -14.26731 -14.13815 -14.02818 -13.96959 -13.71929 -13.61423 -13.57999 -13.50196 -13.38582 -13.26604 -13.15772 -13.05015 -13.03521 -12.98171 -12.89397 -12.36293 -12.23042 -12.08630 -11.87164 -11.81588 -11.64308 -11.45015 -10.71371 -10.68519 -10.47314 -10.42643 -10.13001 -9.93162 -1.17498 -0.18435 0.00206 0.92130 1.17038 1.49640 1.54936 1.91692 1.97051 2.00632 2.01604 2.20440 2.45588 2.73402 2.79028 3.20696 3.30121 3.44930 3.53404 3.57412 3.67062 3.71646 3.83544 4.01090 4.10249 4.16737 4.30975 4.39361 4.42632 4.52083 4.63099 4.71229 4.75139 4.79918 4.81106 4.83421 4.86267 4.86677 4.87156 4.87540 4.89103 5.07915 5.10171 5.17453 5.45520 5.57082 5.59888 5.66308 5.67055 6.57871 6.69379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.068 2.932 3 C -0.463 4.463 4 C -0.476 4.476 5 C -0.408 4.408 6 C -0.121 4.121 7 C -0.626 4.626 8 S 2.572 3.428 9 O -0.970 6.970 10 O -0.971 6.971 11 O -0.668 6.668 12 C 0.050 3.950 13 C -0.116 4.116 14 C -0.111 4.111 15 C -0.094 4.094 16 C -0.086 4.086 17 O -0.551 6.551 18 Si 0.977 3.023 19 H -0.244 1.244 20 H -0.278 1.278 21 H -0.243 1.243 22 C -0.076 4.076 23 C -0.110 4.110 24 C 0.097 3.903 25 O -0.566 6.566 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.161 0.839 43 H 0.132 0.868 44 H 0.390 0.610 45 H 0.154 0.846 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 7.911 3.131 8.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.260 2.740 3 C -0.570 4.570 4 C -0.582 4.582 5 C -0.494 4.494 6 C -0.160 4.160 7 C -0.757 4.757 8 S 2.674 3.326 9 O -0.968 6.968 10 O -0.969 6.969 11 O -0.627 6.627 12 C 0.008 3.992 13 C -0.135 4.135 14 C -0.129 4.129 15 C -0.096 4.096 16 C -0.196 4.196 17 O -0.358 6.358 18 Si 0.800 3.200 19 H -0.167 1.167 20 H -0.204 1.204 21 H -0.166 1.166 22 C -0.094 4.094 23 C -0.112 4.112 24 C 0.019 3.981 25 O -0.374 6.374 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.181 0.819 40 H 0.184 0.816 41 H 0.197 0.803 42 H 0.179 0.821 43 H 0.149 0.851 44 H 0.240 0.760 45 H 0.172 0.828 46 H 0.120 0.880 47 H 0.094 0.906 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.729 7.354 3.174 8.194 hybrid contribution 0.364 0.147 -0.600 0.717 sum 2.093 7.501 2.574 8.202 Atomic orbital electron populations 1.26419 1.22565 1.04371 1.04501 0.78309 0.65138 0.65397 0.65127 1.26275 1.06449 1.19844 1.04392 1.26467 1.06612 1.08348 1.16731 1.26198 1.07143 0.99241 1.16865 1.21220 1.02393 0.97928 0.94437 1.30783 1.15204 1.19715 1.09972 1.06083 0.74283 0.79017 0.73214 1.93607 1.78137 1.70295 1.54788 1.93590 1.32876 1.87030 1.83453 1.85691 1.70042 1.77042 1.29955 1.18112 0.95213 0.98157 0.87698 1.21642 1.01170 0.94725 0.95983 1.21284 0.95052 1.00683 0.95863 1.20750 0.96048 0.95206 0.97565 1.25208 1.06495 1.02189 0.85697 1.86533 1.33189 1.60626 1.55437 0.85296 0.79892 0.74850 0.79966 1.16736 1.20393 1.16600 1.20933 1.00269 0.95980 0.92251 1.20948 0.94995 0.97904 0.97379 1.21426 0.89594 0.92241 0.94850 1.86532 1.26547 1.45193 1.79128 0.90853 0.91660 0.91438 0.91114 0.91744 0.90956 0.91524 0.91640 0.91073 0.88499 0.88793 0.89928 0.89394 0.81857 0.81603 0.80293 0.82143 0.85056 0.76047 0.82802 0.87969 0.90561 0.75477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.00 8.65 113.37 0.98 2.98 16 2 Si 1.07 -8.17 12.19 68.60 0.84 -7.33 16 3 C -0.46 2.49 8.65 113.37 0.98 3.47 16 4 C -0.48 1.65 8.65 113.37 0.98 2.63 16 5 C -0.41 3.56 4.45 71.98 0.32 3.88 16 6 C -0.12 0.66 4.59 30.59 0.14 0.80 16 7 C -0.63 4.10 5.46 71.98 0.39 4.49 16 8 S 2.57 8.51 5.14 -56.49 -0.29 8.22 16 9 O -0.97 -11.21 18.09 -118.57 -2.15 -13.35 16 10 O -0.97 -6.52 14.14 -118.57 -1.68 -8.20 16 11 O -0.67 -2.21 9.50 -61.51 -0.58 -2.80 16 12 C 0.05 0.07 4.78 22.51 0.11 0.18 16 13 C -0.12 0.60 8.46 22.37 0.19 0.79 16 14 C -0.11 0.70 8.66 22.25 0.19 0.89 16 15 C -0.09 0.38 5.35 -19.85 -0.11 0.27 16 16 C -0.09 0.51 2.80 71.24 0.20 0.71 16 17 O -0.55 1.80 12.84 -148.98 -1.91 -0.12 16 18 Si 0.98 -6.68 25.13 68.60 1.72 -4.96 16 19 H -0.24 1.76 7.11 99.48 0.71 2.47 16 20 H -0.28 0.50 7.11 99.48 0.71 1.21 16 21 H -0.24 1.91 7.04 99.48 0.70 2.61 16 22 C -0.08 0.05 8.85 22.25 0.20 0.24 16 23 C -0.11 -0.33 5.30 -19.77 -0.10 -0.44 16 24 C 0.10 0.55 6.73 71.24 0.48 1.03 16 25 O -0.57 -2.54 12.70 -148.98 -1.89 -4.43 16 26 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 27 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 29 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 30 H 0.06 -0.26 7.96 -2.39 -0.02 -0.27 16 31 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 32 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 33 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 34 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H 0.10 -1.08 7.96 -2.39 -0.02 -1.10 16 36 H 0.09 -0.98 7.96 -2.38 -0.02 -1.00 16 37 H 0.08 -0.44 7.79 -2.39 -0.02 -0.46 16 38 H 0.09 -0.56 7.79 -2.39 -0.02 -0.58 16 39 H 0.16 -1.94 6.60 -2.39 -0.02 -1.95 16 40 H 0.17 -1.88 8.14 -2.39 -0.02 -1.90 16 41 H 0.18 -2.27 7.49 -2.91 -0.02 -2.29 16 42 H 0.16 -1.81 4.86 -2.91 -0.01 -1.82 16 43 H 0.13 -1.01 7.96 -2.38 -0.02 -1.03 16 44 H 0.39 -3.72 8.70 -74.05 -0.64 -4.36 16 45 H 0.15 -0.37 6.59 -2.91 -0.02 -0.38 16 46 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.08 0.55 5.93 -2.39 -0.01 0.54 16 48 H 0.39 -1.22 8.11 -74.06 -0.60 -1.82 16 Total: 0.00 -24.47 397.73 -0.51 -24.98 By element: Atomic # 1 Polarization: -14.41 SS G_CDS: 0.48 Total: -13.93 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 4.95 Total: 21.92 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -8.21 Total: -28.89 kcal Atomic # 14 Polarization: -14.85 SS G_CDS: 2.56 Total: -12.29 kcal Atomic # 16 Polarization: 8.51 SS G_CDS: -0.29 Total: 8.22 kcal Total: -24.47 -0.51 -24.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8845266_14927650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.754 kcal (2) G-P(sol) polarization free energy of solvation -24.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds