Wall clock time and date at job start Mon Mar 8 2021 15:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 117.00017 * 2 1 4 4 O 1.20827 * 119.99981 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00085 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.84808 * 311.19479 * 5 3 2 7 7 C 1.53959 * 113.66728 * 82.43993 * 5 3 2 8 8 C 1.53781 * 87.01754 * 139.93069 * 7 5 3 9 9 H 1.09002 * 113.61354 * 89.22883 * 8 7 5 10 10 S 1.81395 * 113.61502 * 220.04659 * 8 7 5 11 11 O 1.42109 * 110.54223 * 172.51583 * 10 8 7 12 12 O 1.42095 * 110.54332 * 35.76522 * 10 8 7 13 13 O 1.52201 * 104.44999 * 284.13831 * 10 8 7 14 14 C 1.35897 * 113.99763 * 75.00336 * 13 10 8 15 15 C 1.38666 * 120.04789 * 89.99951 * 14 13 10 16 16 C 1.38383 * 119.91973 * 180.02562 * 15 14 13 17 17 F 1.35100 * 119.99133 * 180.02562 * 16 15 14 18 18 C 1.38468 * 120.01244 * 0.02562 * 16 15 14 19 19 C 1.38258 * 120.07859 * 359.95716 * 18 16 15 20 20 C 1.50693 * 119.95648 * 180.02562 * 19 18 16 21 21 O 1.42907 * 109.47661 * 119.99891 * 20 19 18 22 22 Si 1.86298 * 109.47618 * 359.97438 * 20 19 18 23 23 C 1.38130 * 120.07993 * 0.27310 * 19 18 16 24 24 C 1.53783 * 87.17758 * 334.63928 * 8 7 5 25 25 H 1.09005 * 109.46474 * 299.99328 * 1 2 3 26 26 H 1.08989 * 109.47209 * 59.99332 * 1 2 3 27 27 H 1.08997 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.08999 * 113.60841 * 25.41635 * 7 5 3 29 29 H 1.08994 * 113.66522 * 254.45660 * 7 5 3 30 30 H 1.08004 * 120.03372 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.96301 * 179.97438 * 18 16 15 32 32 H 1.09000 * 109.46936 * 239.99514 * 20 19 18 33 33 H 0.96697 * 114.00527 * 179.97438 * 21 20 19 34 34 H 1.48506 * 109.99834 * 298.68714 * 22 20 19 35 35 H 1.48502 * 110.00011 * 59.99978 * 22 20 19 36 36 H 1.08004 * 120.00165 * 179.72759 * 23 19 18 37 37 H 1.09000 * 113.61503 * 139.93198 * 24 8 7 38 38 H 1.08997 * 113.61111 * 270.84024 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0240 0.6362 0.7550 7 6 4.1927 1.1222 -1.3987 8 6 5.1807 2.2271 -0.9886 9 1 6.0812 1.8497 -0.5042 10 16 5.5381 3.4113 -2.3153 11 8 6.3154 4.4937 -1.8216 12 8 4.3785 3.6419 -3.1037 13 8 6.4827 2.6649 -3.2465 14 6 5.8729 1.7237 -4.0141 15 6 5.3686 2.0642 -5.2601 16 6 4.7477 1.1038 -6.0393 17 9 4.2563 1.4338 -7.2538 18 6 4.6299 -0.1952 -5.5745 19 6 5.1329 -0.5349 -4.3323 20 6 5.0037 -1.9496 -3.8294 21 8 6.3045 -2.4907 -3.5897 22 14 4.1255 -2.9846 -5.1053 23 6 5.7491 0.4219 -3.5496 24 6 4.1078 2.7143 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 3.5253 1.4126 -2.2101 29 1 4.6646 0.1536 -1.5633 30 1 5.4597 3.0778 -5.6216 31 1 4.1448 -0.9439 -6.1831 32 1 4.4316 -1.9545 -2.9016 33 1 6.2978 -3.4008 -3.2631 34 1 2.7596 -2.4509 -5.3397 35 1 4.8950 -2.9861 -6.3754 36 1 6.1377 0.1561 -2.5775 37 1 4.5112 3.0289 0.9620 38 1 3.4172 3.4406 -0.4290 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_8925532_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:02:55 Heat of formation + Delta-G solvation = -186.144375 kcal Electronic energy + Delta-G solvation = -30020.848114 eV Core-core repulsion = 25453.828368 eV Total energy + Delta-G solvation = -4567.019745 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.070 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.19219 -42.53016 -41.95779 -39.98627 -39.65581 -38.38843 -37.66236 -37.42121 -37.29940 -33.05796 -31.82778 -30.01098 -27.98063 -27.51142 -27.28588 -25.11701 -23.50654 -23.40034 -21.60173 -20.96370 -19.94021 -19.35973 -19.00536 -18.76048 -18.48560 -18.31615 -18.08389 -17.71936 -17.31637 -16.99053 -16.95860 -16.82251 -16.02824 -15.76835 -15.58073 -15.38433 -14.85967 -14.68929 -14.49159 -14.29628 -14.20872 -13.98638 -13.95569 -13.63793 -13.58415 -13.33702 -13.31662 -13.21439 -13.17656 -13.11832 -12.85782 -12.54009 -12.21062 -12.08276 -11.89245 -11.75706 -11.38042 -10.76189 -10.37459 -10.14563 -5.20527 -1.30488 -0.42870 -0.41070 0.74301 0.98604 1.01284 1.42674 1.54493 1.73558 1.82418 2.18899 2.45529 2.62917 2.70257 2.92062 2.96715 3.06042 3.24565 3.32540 3.35494 3.46277 3.56471 3.71223 3.74589 3.91293 3.98221 4.07991 4.10118 4.12501 4.16513 4.23230 4.29315 4.41424 4.46232 4.52068 4.54520 4.62766 4.69107 4.73913 5.25205 5.29313 6.31327 6.58676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.466 3.534 4 O -0.497 6.497 5 C -0.093 4.093 6 H 0.139 0.861 7 C -0.106 4.106 8 C -0.649 4.649 9 H 0.170 0.830 10 S 2.597 3.403 11 O -0.914 6.914 12 O -0.938 6.938 13 O -0.656 6.656 14 C 0.100 3.900 15 C -0.122 4.122 16 C 0.133 3.867 17 F -0.121 7.121 18 C -0.142 4.142 19 C -0.030 4.030 20 C -0.075 4.075 21 O -0.542 6.542 22 Si 0.685 3.315 23 C -0.110 4.110 24 C -0.087 4.087 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.160 0.840 31 H 0.144 0.856 32 H 0.088 0.912 33 H 0.389 0.611 34 H -0.249 1.249 35 H -0.246 1.246 36 H 0.158 0.842 37 H 0.107 0.893 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -9.895 3.287 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.383 6.383 5 C -0.113 4.113 6 H 0.157 0.843 7 C -0.144 4.144 8 C -0.755 4.755 9 H 0.188 0.812 10 S 2.692 3.308 11 O -0.912 6.912 12 O -0.937 6.937 13 O -0.614 6.614 14 C 0.058 3.942 15 C -0.143 4.143 16 C 0.113 3.887 17 F -0.099 7.099 18 C -0.161 4.161 19 C -0.031 4.031 20 C -0.186 4.186 21 O -0.349 6.349 22 Si 0.585 3.415 23 C -0.130 4.130 24 C -0.126 4.126 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.178 0.822 31 H 0.161 0.839 32 H 0.106 0.894 33 H 0.237 0.763 34 H -0.173 1.173 35 H -0.170 1.170 36 H 0.175 0.825 37 H 0.125 0.875 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.248 -8.333 1.868 8.631 hybrid contribution -0.044 0.354 0.614 0.710 sum -1.292 -7.980 2.482 8.456 Atomic orbital electron populations 1.23363 0.75649 1.04154 1.02919 1.86492 1.23937 1.32992 1.83801 1.23449 0.91480 0.81704 0.72575 1.90722 1.66803 1.36378 1.44418 1.22458 0.87926 1.00165 1.00775 0.84299 1.23068 0.95817 0.98766 0.96710 1.32255 1.08285 1.15977 1.18985 0.81250 1.05569 0.73780 0.75570 0.75861 1.93679 1.68598 1.48306 1.80626 1.93688 1.51974 1.83909 1.64123 1.85757 1.58191 1.57287 1.60194 1.17537 0.98500 0.86712 0.91421 1.21290 0.98066 1.01687 0.93271 1.17032 0.97198 0.92443 0.81994 1.91600 1.85079 1.92952 1.40248 1.21126 1.02719 0.95660 0.96601 1.18926 0.97075 0.94423 0.92656 1.24663 0.91351 0.94225 1.08315 1.86485 1.25249 1.33889 1.89272 0.94957 0.78920 0.88670 0.78955 1.21301 0.99275 0.90131 1.02334 1.22644 0.93940 0.96006 0.99993 0.91607 0.91613 0.87664 0.87257 0.87234 0.82249 0.83901 0.89413 0.76265 1.17330 1.16987 0.82459 0.87463 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 101.05 1.07 1.01 16 2 O -0.36 0.09 10.57 -39.25 -0.41 -0.32 16 3 C 0.47 0.29 7.49 36.01 0.27 0.56 16 4 O -0.50 -1.97 15.65 -18.75 -0.29 -2.26 16 5 C -0.09 0.24 4.26 -90.86 -0.39 -0.14 16 6 H 0.14 -0.74 8.14 -51.93 -0.42 -1.17 16 7 C -0.11 0.33 4.72 -25.82 -0.12 0.20 16 8 C -0.65 1.74 4.01 -25.92 -0.10 1.63 16 9 H 0.17 -0.99 8.14 -51.93 -0.42 -1.41 16 10 S 2.60 4.06 5.15 -107.50 -0.55 3.50 16 11 O -0.91 -4.66 18.09 -67.04 -1.21 -5.87 16 12 O -0.94 -3.46 15.62 -67.04 -1.05 -4.51 16 13 O -0.66 -0.94 10.05 -51.74 -0.52 -1.46 16 14 C 0.10 0.11 4.63 -39.23 -0.18 -0.08 16 15 C -0.12 -0.21 9.03 -39.37 -0.36 -0.57 16 16 C 0.13 0.21 7.30 -39.44 -0.29 -0.07 16 17 F -0.12 -0.31 17.27 2.25 0.04 -0.27 16 18 C -0.14 -0.05 8.65 -39.49 -0.34 -0.39 16 19 C -0.03 0.03 5.42 -104.66 -0.57 -0.54 16 20 C -0.08 0.28 2.81 36.00 0.10 0.38 16 21 O -0.54 1.91 12.75 -35.23 -0.45 1.46 16 22 Si 0.68 -2.50 29.79 -169.99 -5.06 -7.57 16 23 C -0.11 0.12 6.21 -39.42 -0.24 -0.13 16 24 C -0.09 0.16 7.00 -25.91 -0.18 -0.02 16 25 H 0.07 -0.10 8.13 -51.93 -0.42 -0.52 16 26 H 0.07 -0.09 8.13 -51.94 -0.42 -0.51 16 27 H 0.10 -0.45 8.14 -51.93 -0.42 -0.87 16 28 H 0.11 -0.21 7.52 -51.93 -0.39 -0.60 16 29 H 0.11 -0.63 5.85 -51.93 -0.30 -0.93 16 30 H 0.16 0.15 8.06 -52.48 -0.42 -0.27 16 31 H 0.14 -0.06 4.87 -52.49 -0.26 -0.32 16 32 H 0.09 -0.55 7.96 -51.93 -0.41 -0.97 16 33 H 0.39 -3.22 8.74 45.56 0.40 -2.82 16 34 H -0.25 0.31 7.11 56.52 0.40 0.71 16 35 H -0.25 0.06 7.11 56.52 0.40 0.46 16 36 H 0.16 -0.62 6.41 -52.48 -0.34 -0.96 16 37 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 38 H 0.11 -0.04 7.39 -51.93 -0.38 -0.42 16 LS Contribution 336.87 15.07 5.08 5.08 Total: 0.00 -12.17 336.87 -9.62 -21.79 By element: Atomic # 1 Polarization: -7.58 SS G_CDS: -3.84 Total: -11.42 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.34 Total: 1.85 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -3.94 Total: -12.97 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: -5.06 Total: -7.57 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -0.55 Total: 3.50 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -12.17 -9.62 -21.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_8925532_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.359 kcal (2) G-P(sol) polarization free energy of solvation -12.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds